EsuBft1046_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1046_2a-0001
Unique NameEsuBft1046_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_421contigScaffold_421:318155..318680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1046_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length42
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_2aEsuBft1046_2aEctocarpus subulatus male Bft15bgeneScaffold_421 318155..318680 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_2a-0001-exonEsuBft1046_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_421 318155..318205 +
EsuBft1046_2a-0001-exonagat-exon-44322Ectocarpus subulatus male Bft15bexonScaffold_421 318304..318680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_2a-0001-cdsEsuBft1046_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_421 318155..318205 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_2a-0001-exonagat-three_prime_utr-450Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_421 318460..318680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_2a-0001EsuBft1046_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_421 318155..318459 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1046_2a-0001 ID=EsuBft1046_2a-0001|Name=EsuBft1046_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=428bp|location=Sequence derived from alignment at Scaffold_421:318155..318680+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCCCGCGAACTCAGTTTTGGCTAACCACTGGCATACTACACAC
CATCGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGAT
ACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGC
TCGACCTCGAACCAGTCAACGCCAATGATATGCGGATGGAGTGTAGACGC
ATCGTAGAACGCGTTTTCGTTTGAAGTTGGCGTCTTGTATGAGAGTAGAT
GTGACAGATTTGCGTAGAATAGGGTATAATGTTATCATGGACGGAGAAGA
AAGGGCTTTTCCAACACGGAGATGAAGCATGGATCAAAGCATTTGTTGGA
TTTCAGCTTTTACAAGCGGACATCAACGCAGTAGTATTTTAGTAAGCTTA
CGAACGCATGTAGGATGCCATGAGGATT
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protein sequence of EsuBft1046_2a-0001

>EsuBft1046_2 ID=EsuBft1046_2|Name=EsuBft1046_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=68bp
MAFPRTQFWLTTGILHTIVSVATQVAISRRVQRYKLALRGRQDAENRRTS
STSNQSTPMICGWSVDAS
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mRNA from alignment at Scaffold_421:318155..318680+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1046_2a-0001 ID=EsuBft1046_2a-0001|Name=EsuBft1046_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=526bp|location=Sequence derived from alignment at Scaffold_421:318155..318680+ (Ectocarpus subulatus male Bft15b)
ATGGCTTTCCCGCGAACTCAGTTTTGGCTAACCACTGGCATACTACACAC
CGTAACAATGTATTATCTTTGGGCCAAAATACCCGAAGAAGTGCAAAAGC
ACTATCCCGTGGTAAGTATGCATGGATGGTCAAGGAACGACTCCTTCAGA
TCGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGATAC
AAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGCTC
GACCTCGAACCAGTCAACGCCAATGATATGCGGATGGAGTGTAGACGCAT
CGTAGAACGCGTTTTCGTTTGAAGTTGGCGTCTTGTATGAGAGTAGATGT
GACAGATTTGCGTAGAATAGGGTATAATGTTATCATGGACGGAGAAGAAA
GGGCTTTTCCAACACGGAGATGAAGCATGGATCAAAGCATTTGTTGGATT
TCAGCTTTTACAAGCGGACATCAACGCAGTAGTATTTTAGTAAGCTTACG
AACGCATGTAGGATGCCATGAGGATT
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Coding sequence (CDS) from alignment at Scaffold_421:318155..318680+

>EsuBft1046_2a-0001 ID=EsuBft1046_2a-0001|Name=EsuBft1046_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_421:318155..318680+ (Ectocarpus subulatus male Bft15b)
ATGGCTTTCCCGCGAACTCAGTTTTGGCTAACCACTGGCATACTACACAC
CATCGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGAT
ACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGC
TCGACCTCGAACCAGTCAACGCCAATGATATGCGGATGGAGTGTAGACGC
ATCGTAG
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