EsuBft1045_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1045_2a-0001
Unique NameEsuBft1045_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_365contigScaffold_365:325751..330053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G642
ProteomeIdEsuBft1045_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPS51257
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsIPR018962
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length135
Hectar predicted targeting categorysignal peptide
Evalue6.81e-195
EggNOG OGs2E7SF@1|root,2SEB9@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_005050.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1045_2aEsuBft1045_2aEctocarpus subulatus male Bft15bgeneScaffold_365 325751..330053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1045_2a-0001EsuBft1045_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_365 326172..330003 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1045_2a-0001-exonagat-exon-35795Ectocarpus subulatus male Bft15bexonScaffold_365 325751..326282 -
EsuBft1045_2a-0001-exonEsuBft1045_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_365 327072..327266 -
EsuBft1045_2a-0001-exonagat-exon-35797Ectocarpus subulatus male Bft15bexonScaffold_365 328017..328184 -
EsuBft1045_2a-0001-exonagat-exon-35796Ectocarpus subulatus male Bft15bexonScaffold_365 328582..328674 -
EsuBft1045_2a-0001-exonagat-exon-35798Ectocarpus subulatus male Bft15bexonScaffold_365 329162..329288 -
EsuBft1045_2a-0001-exonagat-exon-35799Ectocarpus subulatus male Bft15bexonScaffold_365 329819..330053 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1045_2a-0001-exonagat-three_prime_utr-447Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_365 325751..326171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1045_2a-0001-cdsEsuBft1045_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_365 326172..326282 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1045_2a-0001-exonagat-five_prime_utr-274Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_365 330004..330053 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1045_2a-0001 ID=EsuBft1045_2a-0001|Name=EsuBft1045_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1350bp|location=Sequence derived from alignment at Scaffold_365:325751..330053- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCTTTCCTCAGTGACCCTTCCAGGCCGAGGAGATACCACGTCCACATC
ATGGCGAAAGGGTCTGTGCTAGCTTCGTGCGTCCTTTTGTCGTGCTGTTT
CGAACCGGCGACCCCGTTCCTCCAGGTCGGTATAGGAGCACGAACGTCGC
ATGTTGCACTTGGAAGCAGACAGCAGCATGTGCAGCATCATGTGTCGCGG
AATCACCGCCGGCAGCTCCAGCGAGAGACCGTAAGGTGTTTCTTCAGCTT
CGGGGGGGGCGCTATAAAGGGCCCCCCAGCCAACTACGACGCGATCGCGG
CTCAGGCCATCGCTGCTGTGCAGGCGGGGCTCAAGAGCGGAGAGAAGGCC
ATGGAAGTCGAGTTTCCCCCGCTGGCCTCCCTGAACAAGATTAACGACGG
CAGCGCCAAGAATCGAAGACTGGCGCGGGAGAACACCCTAAGTTTCGCAA
AGAAGCTGGTCGGTGCGATCGGCAAGAGCAAGAAAGCGTACGTGGTGTGC
TGCCAGCCGGGGGCGAAGGCCGACTTCGGTAGCGGGGTCAGGGGAGCAGC
CGACGTGCGCGACATCAACGCCAAGAACCTGCCGCCGGCCAAGGCCGGGG
ACGTTGTGGTGGTGGTGACGCCGGCTGACCAGGGCCAGTGGAAGCTTGCA
AAACAAATGGCCGAGACAACCACTGTGGTCATTGTTAACGGCGTTTTCGT
GAACGGCTACGTGCCCTTCGAGCCGGTGTACTACTTCAAGCCTATCTCCG
GGTGGGGTTCCGTGGTTCGTCAGTACCCGGGTCCTTTTACAGCCTACCTG
GCTAACTCGAACAAAGTGGTTCCTTGCGATGCAGGACTTGTGAAGCAGGG
AGACATCCGAAGACCAGATCTAAGGAGCGCTGCCAATGCCCTCAGCGCGG
CGTTTCGAGATCAACAGGGAGCAGCATAGCCCACGAAACATAGCGATAAA
TAATGTCACGGCACCCTCAGATTCACCATGGCAGGCAGACGTGATATAAT
GCTGGCACACAGGGAATGGAACGAGCCGTGATTTGTGCTTTTTTTTTATG
CGCAGCAAGCAACAGCAGCAGAGGAAGCTGCACGAGTGAATACAGGCAGC
GATTCTGCATCGTGCTGCGTGATTGTGTCAGGGCGTCTCCCTCGACCCTC
GCTGTCTTACCATACATAGGTTCTTGAGAGGCAGACTATTCGTCCTTGTT
CAAGGTGGGGTAGTGGTATTGAATCGCTGCAGTGGGGTGCGTTCGATATC
AAGGCGGGCACGCAGTGAGACGACGTGTGCAAGACTTTGGTAGCTAGAGA
TGACTTCTCAGAGGCGGGCAGTGATGGTTGAGACCTTGGCTAGGGGTTAC
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protein sequence of EsuBft1045_2a-0001

>EsuBft1045_2 ID=EsuBft1045_2|Name=EsuBft1045_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=292bp
MAKGSVLASCVLLSCCFEPATPFLQVGIGARTSHVALGSRQQHVQHHVSR
NHRRQLQRETVRCFFSFGGGAIKGPPANYDAIAAQAIAAVQAGLKSGEKA
MEVEFPPLASLNKINDGSAKNRRLARENTLSFAKKLVGAIGKSKKAYVVC
CQPGAKADFGSGVRGAADVRDINAKNLPPAKAGDVVVVVTPADQGQWKLA
KQMAETTTVVIVNGVFVNGYVPFEPVYYFKPISGWGSVVRQYPGPFTAYL
ANSNKVVPCDAGLVKQGDIRRPDLRSAANALSAAFRDQQGAA
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mRNA from alignment at Scaffold_365:325751..330053-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1045_2a-0001 ID=EsuBft1045_2a-0001|Name=EsuBft1045_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4303bp|location=Sequence derived from alignment at Scaffold_365:325751..330053- (Ectocarpus subulatus male Bft15b)
TGTCTTTCCTCAGTGACCCTTCCAGGCCGAGGAGATACCACGTCCACATC
ATGGCGAAAGGGTCTGTGCTAGCTTCGTGCGTCCTTTTGTCGTGCTGTTT
CGAACCGGCGACCCCGTTCCTCCAGGTCGGTATAGGAGCACGAACGTCGC
ATGTTGCACTTGGAAGCAGACAGCAGCATGTGCAGCATCATGTGTCGCGG
AATCACCGCCGGCAGCTCCAGCGAGAGACCGTAAGGTACATTTGATGAAA
TGCGCAGCAAGGCAAGGACGCCTACTGTTGCTAGAGGGCATTCTGGCTTG
CTGTGGAGACTGCATGCGGAAGTTTATGTAGTATGATACGTCGTCGTGTG
AGGTATGCAGCGCATGTTCATCTGGTACATTTTTTTTTTTTTTCAGAGTT
CATGCAACCGCCAGCAAGCCTTTGAAAAGGGCATTACCGGAATGTGTTTC
ATTCTGTGATGTCCAAAGCTTGGCTTCTTTTCGCCGGTCTGCTATACGAT
TTGTGCGGGGTGTTGTGCTTTCCGCCGTGTGCCACGGACGGTGTAGATGC
ACCCTTCTCGGCCTGGCACGGCGCACGGACGGCGTCGTTGTGCACGCTGC
ATGTATCTTTACACAAGTCCCCCTTCCGAGGGTTTGAGTGACATTATACT
GCTGTTCGTCGAACGGCATCCCAAGGCTTCTTCGACTTATTAATCCGTCT
GTCGTTGTCTCTAAACAATTTTCATCTTTTCAATCATGATGCACGTGTCC
CAACCCAACCCCAAGGTGTTTCTTCAGCTTCGGGGGGGGCGCTATAAAGG
GCCCCCCAGCCAACTACGACGCGATCGCGGCTCAGGCCATCGCTGCTGTG
CAGGCGGGGCTCAAGAGCGGAGAGAAGGCCATGGAAGTCGAGGTCAGTCA
GGCCAATGTCCGTTCGTTGATGCTGATGTTCTCCTTCCACACCTGTTCAC
GCTGTCTCTCTCAGGAGAGGGGGCCATGGAAGTCGAGGTCAGTCAGACCG
ATGTCCGTTCGTTGATGATGTTCTTCTCCCGCACCTCTTCACGCTGTCCT
CTCAGGAGACCCGTACACCCACACGAATCGCTCACGGCCAAAGAGCATGC
AGCAGTATGTAGGCAGGCGTAGCTCTTGGTCTTGTCAGCTCAAAGGCATA
GCATCAAGTTTTCGCCAGTTCTGTTCCAAACCATGTTCTGAAACGAGCAA
ATTCGGCCGACGTCGTATTCACTCAACTCCTTAGATGTACCACTCCTGTC
TCACTGAAAATGTCTCTTTGCCTCTGTCTCTCCTTCACTCCCTTATTCTC
TCGCACACTCCCTCTCCTCTCCGTCGCTGTCGCTTCCCTGCTCTGTCTGA
CCTTGTACTGCCTGGGATTCTGCTTTTAGTTTCCCCCGCTGGCCTCCCTG
AACAAGATTAACGACGGCAGCGCCAAGAATCGAAGACTGGCGCGGGAGAA
CACCCTAAGTTTCGCAAAGAAGGTGAACACAAGTTATCCATTGGGTTGGC
CACGTTGTCGTTCACGTCCCATAGCCGTTGTGACTTCTATCTCCACTTCC
ACGTTAGCCGTAGGTACCATGCGTTTTCCCTATTGTCCCTGGTATTGGCA
CCGCCGCTTGGTTCTCTTCTAGCCATTATGTGTTCACTTTGAGTGAAGGC
CTTCTGCCCCCAAGCTTCCTCGCTCTGGGCATTTCGCAATGGGTACCCTG
ATCGACTCCCGATGCGAATGAACAACTTGTTGGGATTTGTTAACTCTGCA
AAGATGGAACGCGATACCAGTGTTTCACTTCTTGCTGGTCGTTTTGTGTT
CTCCCATGTGTACCGCATCCCGTAGCCCTGAGAGTTCGTTTGTCTCCCTC
GTGTATCATCTCGCCGCAGCTGGTCGGTGCGATCGGCAAGAGCAAGAAAG
CGTACGTGGTGTGCTGCCAGCCGGGGGCGAAGGCCGACTTCGGTAGCGGG
GTCAGGGGAGCAGCCGACGTGCGCGACATCAACGCCAAGAACCTGCCGCC
GGCCAAGGCCGGGGACGTTGTGGTGGTGGTGACGCCGGTGAGGCACGCTC
TGCCTTCTGTTCGGTCGCCTGTTCCGCAAGGCTTCACACACTCTGAGTCG
TTTTTTTTTTGTATTAGGCGTCGTGAACAATTGCGATCGGGTACCGATCG
TGAACGCGCTTTACCGTGTTGGAGGGCCTGCTTTTCCTCAGGTTGCTTGT
GGTATATTGACGGGCGAGAACCCTCTTGGCGTGTCTAGCGCACTAACCCC
CCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCNTCTCCGTGTTTTTTTTTTTG
GCGGTTACCATAATGGTGGTCGAGTAGATCATGTTGTGCGGGGTGGAGAA
CCCTCACTCCGCGCAAGGGGGATGATCGCACCACGTTGTGTTAAAATGGT
CAAGCACCCTCGAGGCAGTTACACAGTGCTTACAACTGTCTCTGGAAGTG
AAAGCACCAGAAAATAAATTAAGTCATACGCAGCTGTCATCCGTACGCAA
GGAAGTAAGCACAAGATGCCGAAAACCCTTAGCAGGATGCAGCGCACCCT
TCATGCGACTCGCCGAATATCTCACGGCGCTTCGCGCTTGGTGATGTGAG
AGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGAT
GCGAGGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGTACCCCC
CCCCCCCTCGTTCTATGCCGTTCACAATGTGAGCCAGGCTGACCAGGGCC
AGTGGAAGCTTGCAAAACAAATGGCCGAGACAACCACTGTGGTCATTGTT
AACGGCGTTTTCGTGAACGGCTACGTGCCCTTCGAGCCGGTGTACTACTT
CAAGCCTATCTCCGGGTGGGGTTCCGTGGTTCGTCAGTACCCGGGTCCTT
TTACAGCCTACCTGGCTAACTCGAACAAAGTGGTGAGAGGAGTTGCCGGT
TGAGGCCCTCTTTTTTGTTCTTGACCCCTCTCTGGCTCCAAACGATCACA
ACATTGGGAACCAATCTTCATGAAAGAGTACAATGATGCGAAATTGGAGT
ATATGATAAATATGTATAACGGCTCCCTATTGGTAAGCGTGGCAGGTAGG
TTGAAGGATTGAGAGGTAAAGACTCAATCCTTGTTTCGCCGATGAGCGCA
TCATGGGCATGGGTTTGTAGGTTTTAGGAACAGATTTAGAAGACAAGGGT
ATTAGAAGAAAATGAAGTAGAATACGAGAATGACCACGGAGGAGAAACTT
GGATGACTAGAGGGCATCGGTCTGGCGGGAGGAAGATACCGTGAGCGATA
AAAGTTGTAGTTAAGGGGACGGTAGGGCAAAAGGAGGGTGTGTGCTTGTG
TGTGCTCGTTTGTGTCCTTTCCGGGGTCTTCGACTTGTTGACCACGCATA
CTCGTCGAAACAGAGCACGGTTCCCGCTTCATATCGAGCTAGTTTAGACA
ACCTCCGGGCGATCTTTTCGCGTTTTTGTGACCATCTTTTTGTTCTGCAT
CTATTACGTCCCCTTTGTATTCTGCCTTAATCACTTCTCTCGTTAGGCAG
CAATGCGACCGTACTTTCGCAATTAATGAATGTACCCAAGAGTACGGGCA
AAGACCGAATGGTCTTAGTCCAAAAAATGTATGCAAAATGATGGTCAACC
CCCACACCCTCACCCCAACGTGCTGTCTGTGTGCGTGCCTTCTTTGCAAT
GGTTTCTTGTTTGTCTGTCAGGTTCCTTGCGATGCAGGACTTGTGAAGCA
GGGAGACATCCGAAGACCAGATCTAAGGAGCGCTGCCAATGCCCTCAGCG
CGGCGTTTCGAGATCAACAGGGAGCAGCATAGCCCACGAAACATAGCGAT
AAATAATGTCACGGCACCCTCAGATTCACCATGGCAGGCAGACGTGATAT
AATGCTGGCACACAGGGAATGGAACGAGCCGTGATTTGTGCTTTTTTTTT
ATGCGCAGCAAGCAACAGCAGCAGAGGAAGCTGCACGAGTGAATACAGGC
AGCGATTCTGCATCGTGCTGCGTGATTGTGTCAGGGCGTCTCCCTCGACC
CTCGCTGTCTTACCATACATAGGTTCTTGAGAGGCAGACTATTCGTCCTT
GTTCAAGGTGGGGTAGTGGTATTGAATCGCTGCAGTGGGGTGCGTTCGAT
ATCAAGGCGGGCACGCAGTGAGACGACGTGTGCAAGACTTTGGTAGCTAG
AGATGACTTCTCAGAGGCGGGCAGTGATGGTTGAGACCTTGGCTAGGGGT
TAC
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Coding sequence (CDS) from alignment at Scaffold_365:325751..330053-

>EsuBft1045_2a-0001 ID=EsuBft1045_2a-0001|Name=EsuBft1045_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=879bp|location=Sequence derived from alignment at Scaffold_365:325751..330053- (Ectocarpus subulatus male Bft15b)
ATGGCGAAAGGGTCTGTGCTAGCTTCGTGCGTCCTTTTGTCGTGCTGTTT
CGAACCGGCGACCCCGTTCCTCCAGGTCGGTATAGGAGCACGAACGTCGC
ATGTTGCACTTGGAAGCAGACAGCAGCATGTGCAGCATCATGTGTCGCGG
AATCACCGCCGGCAGCTCCAGCGAGAGACCGTAAGGTGTTTCTTCAGCTT
CGGGGGGGGCGCTATAAAGGGCCCCCCAGCCAACTACGACGCGATCGCGG
CTCAGGCCATCGCTGCTGTGCAGGCGGGGCTCAAGAGCGGAGAGAAGGCC
ATGGAAGTCGAGTTTCCCCCGCTGGCCTCCCTGAACAAGATTAACGACGG
CAGCGCCAAGAATCGAAGACTGGCGCGGGAGAACACCCTAAGTTTCGCAA
AGAAGCTGGTCGGTGCGATCGGCAAGAGCAAGAAAGCGTACGTGGTGTGC
TGCCAGCCGGGGGCGAAGGCCGACTTCGGTAGCGGGGTCAGGGGAGCAGC
CGACGTGCGCGACATCAACGCCAAGAACCTGCCGCCGGCCAAGGCCGGGG
ACGTTGTGGTGGTGGTGACGCCGGCTGACCAGGGCCAGTGGAAGCTTGCA
AAACAAATGGCCGAGACAACCACTGTGGTCATTGTTAACGGCGTTTTCGT
GAACGGCTACGTGCCCTTCGAGCCGGTGTACTACTTCAAGCCTATCTCCG
GGTGGGGTTCCGTGGTTCGTCAGTACCCGGGTCCTTTTACAGCCTACCTG
GCTAACTCGAACAAAGTGGTTCCTTGCGATGCAGGACTTGTGAAGCAGGG
AGACATCCGAAGACCAGATCTAAGGAGCGCTGCCAATGCCCTCAGCGCGG
CGTTTCGAGATCAACAGGGAGCAGCATAG
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