EsuBft1044_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1044_6a-0001
Unique NameEsuBft1044_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:1212816..1215381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCN7
ProteomeIdEsuBft1044_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length231
Hectar predicted targeting categoryother localisation
Evalue3.35e-05
EggNOG OGs2D2W6@1|root,2SP8K@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_6aEsuBft1044_6aEctocarpus subulatus male Bft15bgeneScaffold_499 1212816..1215381 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_6a-0001-exonagat-exon-23594Ectocarpus subulatus male Bft15bexonScaffold_499 1212816..1213037 +
EsuBft1044_6a-0001-exonEsuBft1044_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 1213293..1215381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_6a-0001-cdsEsuBft1044_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 1212816..1213037 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_6a-0001-exonagat-three_prime_utr-442Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 1213536..1215381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_6a-0001EsuBft1044_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 1212816..1213535 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1044_6a-0001 ID=EsuBft1044_6a-0001|Name=EsuBft1044_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2311bp|location=Sequence derived from alignment at Scaffold_499:1212816..1215381+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACAGGAGTGTCTATTCTACACCGGCGATCTCGCTGAGGACCAGCA
CTACTGCTCCGCCGTATGCGACCCTTCGCCGTGCGAGGAGGGCGAGCAGT
GCCACCTCACGCCCGAGAGCTGCGCGGCCGGGTCCATCTGCGGGAACGGG
TTCCTCTGCGCCCCTGCCGCAAACGCAACCCTGCAGGAAGAAGATCCGTG
CGCCCCCTGCGGAGAGTTTCAGGACTGTCGCGTTTACGCTAACGGCGCCT
TCGCCGAGTATTACTGCGCCGACGTGTGCGACCCCAGCCCGTGCGAGGGC
AGCAAGGACAAGTGCTCGCTGGTGGAGCAGGGAGACGACTGCGACGCGGC
GACGTCTGCGTGCCCACCGTTGGCGACGTGCGCGTCCGCGGCCGTGGCGG
CGGCGGAGGAGGAGCGGGCGGACCCCGCGGAACAAACAACGGAGGTAATT
CTTATTGGTGGTTAAGTGAATTTTTTCATTTTTTGTTTTTGCCGTCGTTG
TTGGGCGTCTCGCCTCTCTTGTGCACTCTTTTGCTTTGCCTCGCTCGGCG
TTGTGGGTGTGGGTGTGCGGCGCGTCCATGGCCTTGTGCCTGGACTCTCA
AACTCGAGTCCCACCGCCGTTCTCTTCACCGCCCTCCCCTCGTCGCACAC
ACACCCCGACGAAAGGCGAACTCCAGACTAGGCTCATCATCGGCGAATTG
ATCTCCCGTCGGAGGCGGCGGCGGCTTCGACTGCGGCCACCCATGCCGGC
GATAAGCGGAGGCTCGACCATGGCGTTCGCTTGCTCTGCGGAACCACGCC
AAGGCTTGTCGAACAGGGCAAAACGGTCGAGTTTTCGTCGCTCCCATGTA
CAACTGTTGTCGGATATACGAGGTTGTGAAATTACGGCCGGAGGGACAAG
GGGGGCGGGCGATGGGGAATATGGATTCCCGGTATCTTGGAAAGGGCGCA
GTCGATTGTGGGGTGCACTGCTGCGGTCTTTTCGCGGCCATCCAGTGGAA
CACGTCTTTTTCCGGTGTGTTGTTTTGTATTTGGAGAAATATCTCTCCAA
AGGGTGAATGGTGTCTTGAGGCATTGTGATAAGCGTGTGTCTGACCATGT
TTTACAACGTTTTCTGATTTTGATTTTTACGTTAAGTGTTAATTGTATGC
TAGCACGAGCAAGAAAAAACGAGGTCCGTGCGTGTGCTTGGTTCTTTCGT
TCTTTTGCCTTGCCGTCCCATCTAGTCTGGGCGTCGGTCTACTACACCTT
TCGTTACATATTTGACGCATCAGCGGGGCCACACAAGAAGTTAACACTTT
TTTTTTTCTCTCCACCTTCCCCCTTGCCATATCTTGCCTTCCGACTTTTA
ACGCGAGAAGCGTCAGCAGATTCTGTCCTTATGTAGTGTTTTCTCCCGAC
TACTGTGCGCTTTCCGCGCGCATGTTGCGATTTTTTTCCACTGCAAGAGA
GCTTCGAATCCGCAATCTAAATAGAGAGTCTGAGTTGGGAGGGTACATCA
ACTGATTCGCCGGGACGACCATAATGGTAGGAGTATAATAGTTTACTCGT
TTGCGAGCGGCGTGTTGTTTTGTATCCATCCTTGTGGCAGGCCAGACTAG
TGTAGCGAATGGTCTAGAGTAGCAAATAGTGACCCCACAACTCTGCTGGG
ATGCACTGTCCAGCGGGACATGCGCCCCGTTCGGAGCAAACTACGCGATA
TAGGCCCATCTCCGCGAAAAGTGCGGATTTTCTTGTTTGAGAGTTGATGG
TTTTGTGCTCGTGTGACGCACGCGAGCGCGTGGTCCTCGCGTATTCCCGA
GTTGTTTTTGTGTACTCAGCATTCGTTACGATCGCCATGGTCATGGACTC
TCAAGCGGCCTATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGTGCACGAAGCAGT
CAGAGTTGGTTGGGTTTGCCCAGGATCGTGCGCGTGCAGTCGTTTCGGCC
AGGCCTGATGAGCTGAATCTTCAAGATCACGCGGTCTGCATTATGTGCGA
TGTGGTAGGGCCGGGGGGAGGGGAGGGCGTGACATTTGCATCGAGCCTTA
CCCGACTGTTGAGAGATAGACGTGTGGGCGAGCATGGGCTGGTGCAGGTC
GGTAATTTGTTGGGCGTTATCGGCCAGGTGATGGAGCAAGACACGATTGT
GTCGAGAAGCGAATCTTGTGGTTTTCATCGCGGAGGAAGATGACAGTCTA
CATAATGCTGACAGAGAGAGCTGTTGTGGTTTACTTGAACGTTAACCCAG
TGTGTGTGCGT
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protein sequence of EsuBft1044_6a-0001

>EsuBft1044_6 ID=EsuBft1044_6|Name=EsuBft1044_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=154bp
MPQECLFYTGDLAEDQHYCSAVCDPSPCEEGEQCHLTPESCAAGSICGNG
FLCAPAANATLQEEDPCAPCGEFQDCRVYANGAFAEYYCADVCDPSPCEG
SKDKCSLVEQGDDCDAATSACPPLATCASAAVAAAEEERADPAEQTTEVI
LIGG
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mRNA from alignment at Scaffold_499:1212816..1215381+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1044_6a-0001 ID=EsuBft1044_6a-0001|Name=EsuBft1044_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2566bp|location=Sequence derived from alignment at Scaffold_499:1212816..1215381+ (Ectocarpus subulatus male Bft15b)
ATGCCACAGGAGTGTCTATTCTACACCGGCGATCTCGCTGAGGACCAGCA
CTACTGCTCCGCCGTATGCGACCCTTCGCCGTGCGAGGAGGGCGAGCAGT
GCCACCTCACGCCCGAGAGCTGCGCGGCCGGGTCCATCTGCGGGAACGGG
TTCCTCTGCGCCCCTGCCGCAAACGCAACCCTGCAGGAAGAAGATCCGTG
CGCCCCCTGCGGAGAGTTTCAGGTATGTGTGTGTGTGTGTCCTGTTTGTT
CCTGGTGTCGACCGCGCAAACCGGCTGACCAATGAGATAGACGTCAGCGT
TTAGTCTGTGGTTCTTTTTATCATCAGCATCGAGTGCGCTACAAGCGGCC
GGCTCATGAAGAAACGCCAGTCTCGTCGCGGGACAAGAAAACTTGAATAC
TTCATTTCTTGGCGCCTCTCCTTGTTCTCTGACCGCTTCGACTTGGCTGT
CATGGCCAACAACGAAAAACAAAACAGGACTGTCGCGTTTACGCTAACGG
CGCCTTCGCCGAGTATTACTGCGCCGACGTGTGCGACCCCAGCCCGTGCG
AGGGCAGCAAGGACAAGTGCTCGCTGGTGGAGCAGGGAGACGACTGCGAC
GCGGCGACGTCTGCGTGCCCACCGTTGGCGACGTGCGCGTCCGCGGCCGT
GGCGGCGGCGGAGGAGGAGCGGGCGGACCCCGCGGAACAAACAACGGAGG
TAATTCTTATTGGTGGTTAAGTGAATTTTTTCATTTTTTGTTTTTGCCGT
CGTTGTTGGGCGTCTCGCCTCTCTTGTGCACTCTTTTGCTTTGCCTCGCT
CGGCGTTGTGGGTGTGGGTGTGCGGCGCGTCCATGGCCTTGTGCCTGGAC
TCTCAAACTCGAGTCCCACCGCCGTTCTCTTCACCGCCCTCCCCTCGTCG
CACACACACCCCGACGAAAGGCGAACTCCAGACTAGGCTCATCATCGGCG
AATTGATCTCCCGTCGGAGGCGGCGGCGGCTTCGACTGCGGCCACCCATG
CCGGCGATAAGCGGAGGCTCGACCATGGCGTTCGCTTGCTCTGCGGAACC
ACGCCAAGGCTTGTCGAACAGGGCAAAACGGTCGAGTTTTCGTCGCTCCC
ATGTACAACTGTTGTCGGATATACGAGGTTGTGAAATTACGGCCGGAGGG
ACAAGGGGGGCGGGCGATGGGGAATATGGATTCCCGGTATCTTGGAAAGG
GCGCAGTCGATTGTGGGGTGCACTGCTGCGGTCTTTTCGCGGCCATCCAG
TGGAACACGTCTTTTTCCGGTGTGTTGTTTTGTATTTGGAGAAATATCTC
TCCAAAGGGTGAATGGTGTCTTGAGGCATTGTGATAAGCGTGTGTCTGAC
CATGTTTTACAACGTTTTCTGATTTTGATTTTTACGTTAAGTGTTAATTG
TATGCTAGCACGAGCAAGAAAAAACGAGGTCCGTGCGTGTGCTTGGTTCT
TTCGTTCTTTTGCCTTGCCGTCCCATCTAGTCTGGGCGTCGGTCTACTAC
ACCTTTCGTTACATATTTGACGCATCAGCGGGGCCACACAAGAAGTTAAC
ACTTTTTTTTTTCTCTCCACCTTCCCCCTTGCCATATCTTGCCTTCCGAC
TTTTAACGCGAGAAGCGTCAGCAGATTCTGTCCTTATGTAGTGTTTTCTC
CCGACTACTGTGCGCTTTCCGCGCGCATGTTGCGATTTTTTTCCACTGCA
AGAGAGCTTCGAATCCGCAATCTAAATAGAGAGTCTGAGTTGGGAGGGTA
CATCAACTGATTCGCCGGGACGACCATAATGGTAGGAGTATAATAGTTTA
CTCGTTTGCGAGCGGCGTGTTGTTTTGTATCCATCCTTGTGGCAGGCCAG
ACTAGTGTAGCGAATGGTCTAGAGTAGCAAATAGTGACCCCACAACTCTG
CTGGGATGCACTGTCCAGCGGGACATGCGCCCCGTTCGGAGCAAACTACG
CGATATAGGCCCATCTCCGCGAAAAGTGCGGATTTTCTTGTTTGAGAGTT
GATGGTTTTGTGCTCGTGTGACGCACGCGAGCGCGTGGTCCTCGCGTATT
CCCGAGTTGTTTTTGTGTACTCAGCATTCGTTACGATCGCCATGGTCATG
GACTCTCAAGCGGCCTATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGTGCACGAA
GCAGTCAGAGTTGGTTGGGTTTGCCCAGGATCGTGCGCGTGCAGTCGTTT
CGGCCAGGCCTGATGAGCTGAATCTTCAAGATCACGCGGTCTGCATTATG
TGCGATGTGGTAGGGCCGGGGGGAGGGGAGGGCGTGACATTTGCATCGAG
CCTTACCCGACTGTTGAGAGATAGACGTGTGGGCGAGCATGGGCTGGTGC
AGGTCGGTAATTTGTTGGGCGTTATCGGCCAGGTGATGGAGCAAGACACG
ATTGTGTCGAGAAGCGAATCTTGTGGTTTTCATCGCGGAGGAAGATGACA
GTCTACATAATGCTGACAGAGAGAGCTGTTGTGGTTTACTTGAACGTTAA
CCCAGTGTGTGTGCGT
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Coding sequence (CDS) from alignment at Scaffold_499:1212816..1215381+

>EsuBft1044_6a-0001 ID=EsuBft1044_6a-0001|Name=EsuBft1044_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=465bp|location=Sequence derived from alignment at Scaffold_499:1212816..1215381+ (Ectocarpus subulatus male Bft15b)
ATGCCACAGGAGTGTCTATTCTACACCGGCGATCTCGCTGAGGACCAGCA
CTACTGCTCCGCCGTATGCGACCCTTCGCCGTGCGAGGAGGGCGAGCAGT
GCCACCTCACGCCCGAGAGCTGCGCGGCCGGGTCCATCTGCGGGAACGGG
TTCCTCTGCGCCCCTGCCGCAAACGCAACCCTGCAGGAAGAAGATCCGTG
CGCCCCCTGCGGAGAGTTTCAGGACTGTCGCGTTTACGCTAACGGCGCCT
TCGCCGAGTATTACTGCGCCGACGTGTGCGACCCCAGCCCGTGCGAGGGC
AGCAAGGACAAGTGCTCGCTGGTGGAGCAGGGAGACGACTGCGACGCGGC
GACGTCTGCGTGCCCACCGTTGGCGACGTGCGCGTCCGCGGCCGTGGCGG
CGGCGGAGGAGGAGCGGGCGGACCCCGCGGAACAAACAACGGAGGTAATT
CTTATTGGTGGTTAA
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