EsuBft1044_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1044_5a-0001
Unique NameEsuBft1044_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:1206840..1210228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCN7
ProteomeIdEsuBft1044_5
Protein domainsIPR008993
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length165
Hectar predicted targeting categoryother localisation
Evalue5.35e-23
EggNOG OGs2D2W6@1|root,2SP8K@2759|Eukaryota
Ec32 ortholog descriptionTissue inhibitor of metalloproteinases-like, OB-fold
Ec32 orthologEc-16_001740.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_5aEsuBft1044_5aEctocarpus subulatus male Bft15bgeneScaffold_499 1206840..1210228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_5a-0001EsuBft1044_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 1206840..1209243 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_5a-0001-exonagat-exon-23592Ectocarpus subulatus male Bft15bexonScaffold_499 1206840..1206940 +
EsuBft1044_5a-0001-exonagat-exon-23590Ectocarpus subulatus male Bft15bexonScaffold_499 1207268..1207444 +
EsuBft1044_5a-0001-exonagat-exon-23593Ectocarpus subulatus male Bft15bexonScaffold_499 1207885..1208020 +
EsuBft1044_5a-0001-exonagat-exon-23591Ectocarpus subulatus male Bft15bexonScaffold_499 1208706..1208939 +
EsuBft1044_5a-0001-exonEsuBft1044_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 1209226..1210228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_5a-0001-cdsEsuBft1044_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 1206840..1206940 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_5a-0001-exonagat-three_prime_utr-441Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 1209244..1210228 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1044_5a-0001 ID=EsuBft1044_5a-0001|Name=EsuBft1044_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1651bp|location=Sequence derived from alignment at Scaffold_499:1206840..1210228+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTGCAAGGTGGTTTCAGAAGGGCCGCCTCAAGTGCGGCACGGCCT
GTTTGCGCAACGTCTTGAGCATCTATTTCCACGGGTGACGCCCCAACCCA
GGACGGTGCTGGTGGATCGCCCGGATTTCGTGACGTACAATGTAAAGGTC
GGTACGCTCTACAAGACGGAGGTCGGAGTGGACTACCCCGTGGAGATAGA
GGTCACCACCAGCGCGAGCGCCGCCGATTGCGGCGTCTATCTTCAAGTCG
GGGGGGAGTACCTCCTTGATCTCTATCGGTATAAGGGCGAGTTGCGGAGC
GTGGGCGCTTGCGGGGCAACCCAAAGCTGGACAACCCTTCCCGCGGATAG
GATCGCCACCCTGGGAGACATCAACCGTGCGTGCCACCCGTGTGCGGCCT
GCGGGGAGTCGCAGGACTGCCTCCTGTACACCGACGGCGACTCGACAACA
ACATCATCTTCGGTGACGGGCGGGGGGAAGGAGTTCTACTGCGCCGACAC
GTGCGCCGCGGGGGTGTGCGGCGCTGAAGAGACGTGCTACCTTAACGAGG
CCCACTGCACCGAAGGGCCTTGCCCCCCCGTCGCCGAGTGCGGCACCCCG
CCGGCATCCCCGATAGACAAGTGCGGCGGATCCTGCCTGGATTCCGAGGC
GGGAATGAAACCTTAGCGTCGTCTCCCACACCCCTTTTGCCATTTTTTCG
AAGCTTCCCCATTTGCTTAGCAATGGTGCCAAGAGCCGTTGCCGATGGTC
GTCTTGTGAACTTTTAGGTGTGAAGCGGTCGTCGTGGTCACGGGACTGTC
AGTCTTTTCACCGAAGGGAGACATGAAAAGTTGCGCCGCGCCAAGCCGCG
CCAAGCCGTGCCGGTTGTGGCGCAAACCCACCCCAAGCGGCGCGCTCACC
TTCGGACTCAATCATCCCAACACTTTATTTAGTGTGCACCACTGTTATTC
TGGATTTTGGCGCGTCACTACTGATTTGTTGCTGGCTTTCGTCGAGGACA
GCAGTGCTGCAATACAGCGGCTGTGACCTATCTTCCCCTCCCGAAAACGC
CTCCGTGTTTTCAAAGCACGCCGCGTTTTGTGTCTCCCGGACACCCGATA
TCGGAACTCAGTCGTACTCTCGACCACGGCTTTCGCCGCTATGAAATTCC
GCCAAGCCTCTAACGCTCCCCCGCCAAATCTCTCTCTCTCTCTCTCTCTC
ACACACACACACACAAACCCTGACTTAGCCCCCCCCATGCCGCCCCCTCA
CCGGGTCCCAGTTCATCGCATTTAGAAGTGTTTTGTGTTTCCAACCGCAC
TGAGACTGACGCTTTCATTGGTCAGCCGGTTAGCGTGGCCGGTCGATGCT
AACAAAAAAAAAGAAAATCACGCACACACACGCACTTGCTCGTGCTTCGC
CATGACCCGCCGCTTTCCTTTCGTCAACTTTTCTTGTCTCCTCGCGATCC
CGCAGGAATGCCTTCCTTACACGGCCGGCGTCGACCAGTACTACTGTTCG
GCCGTCTGCGACCCTTCCCCCTGCGAGGGCGAGGGCGAGGAGTGCAGCGT
GCTGCCGGTGTACTGCCCGGCTGACTCCATCTGCAGGAGCGGCTTCGCGT
GCACCCGAGCCGGCGTGGTGAAGAAGACTTTCCGGGCCGCGATCGGAGAG
G
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protein sequence of EsuBft1044_5a-0001

>EsuBft1044_5 ID=EsuBft1044_5|Name=EsuBft1044_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=221bp
MICKVVSEGPPQVRHGLFAQRLEHLFPRVTPQPRTVLVDRPDFVTYNVKV
GTLYKTEVGVDYPVEIEVTTSASAADCGVYLQVGGEYLLDLYRYKGELRS
VGACGATQSWTTLPADRIATLGDINRACHPCAACGESQDCLLYTDGDSTT
TSSSVTGGGKEFYCADTCAAGVCGAEETCYLNEAHCTEGPCPPVAECGTP
PASPIDKCGGSCLDSEAGMKP
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mRNA from alignment at Scaffold_499:1206840..1210228+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1044_5a-0001 ID=EsuBft1044_5a-0001|Name=EsuBft1044_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3389bp|location=Sequence derived from alignment at Scaffold_499:1206840..1210228+ (Ectocarpus subulatus male Bft15b)
ATGATTTGCAAGGTGGTTTCAGAAGGGCCGCCTCAAGTGCGGCACGGCCT
GTTTGCGCAACGTCTTGAGCATCTATTTCCACGGGTGACGCCCCAACCCA
GGTAGGGTCTTTTTTTGTGACTTACGGCATGCATTTGCATGACTACCCCC
CCTCCCTCGTCTCATACAGGGAGGCCCCGAAAATCACAGAGTTTTCACAG
TGGAGAGAACATGTGACCACTCACAACTCTGCGAAAATTACAGAGTTTTC
ACAACCTGTGAAGAGAACATGTGACCAATCACAACTCAGCAAAAATCACA
GAGTTTTCACAGTGACGAGCACATGTGACTGATCACAACTCAGCAGCGCT
TAAGCGCTGTATGCATAAATCTGACCAACCACAACCTGGAAATTGAGCGG
CGTAACACCGCGCCTTGGCTACAAACAGGACGGTGCTGGTGGATCGCCCG
GATTTCGTGACGTACAATGTAAAGGTCGGTACGCTCTACAAGACGGAGGT
CGGAGTGGACTACCCCGTGGAGATAGAGGTCACCACCAGCGCGAGCGCCG
CCGATTGCGGCGTCTATCTTCAAGTCGGGGGGGAGTACCTCCTTGATCTC
TATCGGTACGTTGTAGATAAAGCCTCCAAGAGATGGAAGCAAGTATGCAT
ATGTATGTATGCGCCTCTTGATGGTTATTTAGTTCAATTATACACGTCCT
TGACGCTCTTGAACGCGCTACATATGGCGTTGCGCTCCTGCGTGGTACGG
TTATACTGGAGGTGCACTGGAAGCGTGTTGTGCTTGGTGCATCTCCCCAC
CGTTTTTTGTTGTTTTTTTTTGTCAGCCGCACACTGGTCAAGGCGGTTTG
TTTTCGCTGAAGAGCTAGTTGACGCGCGGGTCGATAGAGGCCTCTTGCGC
ATGTCGAGGCCTGATGAACACGTGTACACACACCCTTCGCACAGCGACGT
GTAGCCGCTCAGTGCTTCACGATAAGCATGAACCATCCTATGAATTATAC
TCATCCTACACCAATGTAATGGCCGACACACGCAAAAAAACACAGGTATA
AGGGCGAGTTGCGGAGCGTGGGCGCTTGCGGGGCAACCCAAAGCTGGACA
ACCCTTCCCGCGGATAGGATCGCCACCCTGGGAGACATCAACCGTGCGTG
CCACCCGTGTGCGGCCTGCGGGGAGTCGCAGGTATGTCGTCTTGGCGGTG
GCAGGGGGGAGGAACGGGCGCGCTCATTTTTAGCTTGCCGTAGTTGTTGG
GCCAATGACCACGCGTCCTCGAGAGGACGGAGCATTGTTCCCACAGGACC
GATTCAACTCTGGCCAATCCTCCCTTCCTACTTTACCGAAGGTGGGCCGG
GGGGGNGTTTATGCCTTTTTAGCGTCTGCTGTCTTCATCGCCGTCGTTGG
GAGGACCGATGACATGACATGGGTACGAAAGAGGCGGGAAGGGCCTCGAT
GTGTCCGGTAGAGCACGGGAGGAGCGGTGTGGTCAGCCCGTTGGCGCGAG
ATCGATGCCACAACAGGTATCGAACACACGCACACGCATGGCACAACTCA
TGTTCGCGTTTCTCTCCCGCTGTAAGGCTGACAATCGGTTCGCGAGATGT
GGATGCCACAATAGTTAACGACCGCACACACACGCCCATGCATCATGGCA
TGTAGAATTATGTTGTGTTTTCAACCGCACTGAGATTGACGTCTTTTCAT
TGGTCAGCCGGTTCGCGCGGTCGATGCTGATAATAAAAGACACACGCACA
CGCATACAGGATGCGTGTTGACATTTTTTTTCGTCCCGATGTACGACTGA
TATCCTCTGCCCATCTGTCAGCCCTTCCCGATGCTCACTGTTCGAACACA
CCCGCGCATACGACAGGACTGCCTCCTGTACACCGACGGCGACTCGACAA
CAACATCATCTTCGGTGACGGGCGGGGGGAAGGAGTTCTACTGCGCCGAC
ACGTGCGCCGCGGGGGTGTGCGGCGCTGAAGAGACGTGCTACCTTAACGA
GGCCCACTGCACCGAAGGGCCTTGCCCCCCCGTCGCCGAGTGCGGCACCC
CGCCGGCATCCCCGATAGACAAGTGCGGCGGATCCTGCCTGGATTCCGAG
GTGAACACGAAAGAACACAAAGAGGAAAGTTTTTTTGCCAATTGGTAGTG
GGTTGCCAAGACATGCTGCATGAATGCACCCCACAGGTGTCGTAGATCGA
GGAAGGACTTAAGTATGGAAAAGGTCTCTCTGGTTGATATGTTTTGGCGG
TGCCTGTGTTCTTCCCGCCGCGCCCATGGAACACTTCCCCTTCCCCCCAC
CGGAACACCACCTGAAAAATTTTGACGCGAACCCCGCCCCCCTCGGGCGT
TGGTTACATGCTGGTCGTCGCGTCCGGTAGGTGCAGGCGGGAATGAAACC
TTAGCGTCGTCTCCCACACCCCTTTTGCCATTTTTTCGAAGCTTCCCCAT
TTGCTTAGCAATGGTGCCAAGAGCCGTTGCCGATGGTCGTCTTGTGAACT
TTTAGGTGTGAAGCGGTCGTCGTGGTCACGGGACTGTCAGTCTTTTCACC
GAAGGGAGACATGAAAAGTTGCGCCGCGCCAAGCCGCGCCAAGCCGTGCC
GGTTGTGGCGCAAACCCACCCCAAGCGGCGCGCTCACCTTCGGACTCAAT
CATCCCAACACTTTATTTAGTGTGCACCACTGTTATTCTGGATTTTGGCG
CGTCACTACTGATTTGTTGCTGGCTTTCGTCGAGGACAGCAGTGCTGCAA
TACAGCGGCTGTGACCTATCTTCCCCTCCCGAAAACGCCTCCGTGTTTTC
AAAGCACGCCGCGTTTTGTGTCTCCCGGACACCCGATATCGGAACTCAGT
CGTACTCTCGACCACGGCTTTCGCCGCTATGAAATTCCGCCAAGCCTCTA
ACGCTCCCCCGCCAAATCTCTCTCTCTCTCTCTCTCTCACACACACACAC
ACAAACCCTGACTTAGCCCCCCCCATGCCGCCCCCTCACCGGGTCCCAGT
TCATCGCATTTAGAAGTGTTTTGTGTTTCCAACCGCACTGAGACTGACGC
TTTCATTGGTCAGCCGGTTAGCGTGGCCGGTCGATGCTAACAAAAAAAAA
GAAAATCACGCACACACACGCACTTGCTCGTGCTTCGCCATGACCCGCCG
CTTTCCTTTCGTCAACTTTTCTTGTCTCCTCGCGATCCCGCAGGAATGCC
TTCCTTACACGGCCGGCGTCGACCAGTACTACTGTTCGGCCGTCTGCGAC
CCTTCCCCCTGCGAGGGCGAGGGCGAGGAGTGCAGCGTGCTGCCGGTGTA
CTGCCCGGCTGACTCCATCTGCAGGAGCGGCTTCGCGTGCACCCGAGCCG
GCGTGGTGAAGAAGACTTTCCGGGCCGCGATCGGAGAGG
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Coding sequence (CDS) from alignment at Scaffold_499:1206840..1210228+

>EsuBft1044_5a-0001 ID=EsuBft1044_5a-0001|Name=EsuBft1044_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=666bp|location=Sequence derived from alignment at Scaffold_499:1206840..1210228+ (Ectocarpus subulatus male Bft15b)
ATGATTTGCAAGGTGGTTTCAGAAGGGCCGCCTCAAGTGCGGCACGGCCT
GTTTGCGCAACGTCTTGAGCATCTATTTCCACGGGTGACGCCCCAACCCA
GGACGGTGCTGGTGGATCGCCCGGATTTCGTGACGTACAATGTAAAGGTC
GGTACGCTCTACAAGACGGAGGTCGGAGTGGACTACCCCGTGGAGATAGA
GGTCACCACCAGCGCGAGCGCCGCCGATTGCGGCGTCTATCTTCAAGTCG
GGGGGGAGTACCTCCTTGATCTCTATCGGTATAAGGGCGAGTTGCGGAGC
GTGGGCGCTTGCGGGGCAACCCAAAGCTGGACAACCCTTCCCGCGGATAG
GATCGCCACCCTGGGAGACATCAACCGTGCGTGCCACCCGTGTGCGGCCT
GCGGGGAGTCGCAGGACTGCCTCCTGTACACCGACGGCGACTCGACAACA
ACATCATCTTCGGTGACGGGCGGGGGGAAGGAGTTCTACTGCGCCGACAC
GTGCGCCGCGGGGGTGTGCGGCGCTGAAGAGACGTGCTACCTTAACGAGG
CCCACTGCACCGAAGGGCCTTGCCCCCCCGTCGCCGAGTGCGGCACCCCG
CCGGCATCCCCGATAGACAAGTGCGGCGGATCCTGCCTGGATTCCGAGGC
GGGAATGAAACCTTAG
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