EsuBft1044_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1044_16a-0001
Unique NameEsuBft1044_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:1314362..1317627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft1044_16
Protein domainsIPR006912
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length191
Hectar predicted targeting categoryother localisation
Evalue1.88e-22
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPlant transposon protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016788
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_16aEsuBft1044_16aEctocarpus subulatus male Bft15bgeneScaffold_499 1314362..1317627 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_16a-0001-exonagat-exon-23635Ectocarpus subulatus male Bft15bexonScaffold_499 1314362..1316094 -
EsuBft1044_16a-0001-exonEsuBft1044_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 1316692..1316696 -
EsuBft1044_16a-0001-exonagat-exon-23634Ectocarpus subulatus male Bft15bexonScaffold_499 1317447..1317627 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_16a-0001-exonagat-three_prime_utr-435Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 1314362..1315668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_16a-0001-cdsEsuBft1044_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 1315669..1316094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_16a-0001EsuBft1044_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 1315669..1317627 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1044_16a-0001 ID=EsuBft1044_16a-0001|Name=EsuBft1044_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1919bp|location=Sequence derived from alignment at Scaffold_499:1314362..1317627- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCCGCAAACGAATCGTGTCCCTGGCCGCCGTTGTCTGGTGATTT
ATTCGAACAGGTTTTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATT
TCGACGATGTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCAC
ATGTTCCACAAGTTCACGGAGAGATTCGCGCACACTCTCCAGAGTCCGAT
CAGGGCGCCATCAAACAAGGCCGAGTCAGGGTTCAAGAGACAGCTCGAGA
GCGTCCGCAAGGACTCGGAGTGCTGCTTCGGCGTCGTCAAGGGGCGGTTC
AGGATCTGCAAGATGCAGTTCCTCTACAGGAAGAAAGAGAGGATCGACAA
CATCTTCTTCACGTGCATCATACTGCACAACATGCTTCTCGCCTACGACG
GGATCGAGCTCTTGGAGCCGGACTGCGACTGGGCCGGAGCGGACGGCGAC
CTCGACAAAAACATCGAGCACCCTGTAGTGCGGATGAGTGCGCCCACGCA
CGAGGATGCAGTCGTGGAGTGTGATGACGGCTTCGACGCATTGAGGCAGA
AGTTGGTGACCAACTTCGCTTACCGATGGGGACAGGGGACCGTTGGGTGG
AAGAGGTCGTGATGACCCGTGGGAAGTCACATGGTGCTATGTTGATGGCG
GGGAGGTAGGGGGGCGGGGGGGCGTGTTGGAGGCGTTGTCCGCCCCTTCG
GCTGTAATTAGTGGCACTTTTTTTTCCCCCGTTGAAGACCACGTCCTTCT
CCGCCCCTCCGTAGTCAGCATCGTCATCTTTCGTTTTTGGTCCTTGTTGC
CAAGTCTTGCCTTTGCCTTTGCCTGGGCCTTGTTGATACTTTGCCGTGTT
GTTGTTGTCTCCTCGTCGTATGTGATCTCTTTTTTTATTTCGTATCTGGC
CTGTTTTCGATTCCCCTTTCCGCGGCTTGCGCGTCTTGGCACTTAGCATA
CTACAACTGTCTGTATTCTTGCGTATTGTCATCAGATTTGGCATTTGTGT
CTCGGTGTACTTTCCTTTCTCTGTCCATCTTTGCACCTTTTTGCTTGATG
GGTGTGGAACAGCCTCTAGTTTAGGCGGAGTTTTCTTCCCTCTTCTGGAG
CAGGACTGTCTTTTGTGTGCTTGCTCTTCGCCATTTTTATTATTGTGCCC
CGAGGGGTTAGCCCCATCGGGTTTCAGATTGTTTTAGTATCATATCGCGT
GAGTATATAATAGTTTTGTTTATTTTCTTTGCGGTTGCGACTGTATCCAA
GTGTGACAACAGGCTCCGTTGAGTTTCCTTTGCCTTTTGCGTTGCCTTGT
TGGGACCTTGCGTTTGCCGTATTGTTGTTGTCTCCTCGTAATCGTATCTC
GATATGTTTTTTTTTTCTTTCGTGTCTGGCCTGTTTTCGCTTCCCTCGTC
TACAGGCTTGCGCGTCTTCGCCCTTCGCATGCAACTGTCGGCGGTCTTGC
GCATTGGTATCGGTGTCTCGATGGATTTATTTTTCTGGGTCCATCCTTGC
ACCTTCTTTCAACTAACCCTATTTTTTTTTCTGACGGGTGCGGGAAGCCT
CTAGGCTATGTAGCCGGAGTTTCCTTCGCTCTGCTGGCGGAGGACTGTTA
TATATTGCTTGTTTTTCGCAGCATTATTTTTGTGTCCCGATTAGACTCAG
CACGGTTCGGTTTTTGTTAGCATCGCATAACGCGTGCGCACAATAATTTG
TTTATTTTTTTTGCGGGGTCGAGTGTACCCAAATGTGTGGCCACAGGCTC
CAACGGATGTTTTGGAAAAGAGAGCTACAGCAGTACATGCCACGACACCG
AAAAACGAAACGTGCACCTGCACAATTTGTGGTTTAGTGGTCCGGCAGGT
AAAAACTTGTCATGCACGTCATGTTGTGTGCAGGGTGGCGAAACACCGGT
ACTGCTGTGTTGGCCCGTA
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protein sequence of EsuBft1044_16a-0001

>EsuBft1044_16 ID=EsuBft1044_16|Name=EsuBft1044_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=203bp
MKSANESCPWPPLSGDLFEQVLAVLRILGRGNYFDDVSEVTGMGEATVNH
MFHKFTERFAHTLQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRF
RICKMQFLYRKKERIDNIFFTCIILHNMLLAYDGIELLEPDCDWAGADGD
LDKNIEHPVVRMSAPTHEDAVVECDDGFDALRQKLVTNFAYRWGQGTVGW
KRS
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mRNA from alignment at Scaffold_499:1314362..1317627-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1044_16a-0001 ID=EsuBft1044_16a-0001|Name=EsuBft1044_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3266bp|location=Sequence derived from alignment at Scaffold_499:1314362..1317627- (Ectocarpus subulatus male Bft15b)
ATGAAGTCCGCAAACGAATCGTGTCCCTGGCCGCCGTTGTCTGGTGATTT
ATTCGAACAGGTTTTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATT
TCGACGATGTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCAC
ATGTTCCACAAGTTCACGGAGAGATTCGCGCGTGAGTTTTTTCCGGTATG
GGTGAGGATGCCGAATGAAGACGAGCTGAAGGACATCATGAAAACCTATG
ACGAGGTTGGAATGTCGGGCGCCATGGGGTCGATGGATGGGACGCACATT
GAGTGGACGTTGTGTCCTTATTCCCAACGCTCGTCGCACATTGGCAAGGA
AGGCTACGCTACCCTCGTGTTCAATGTTGCCGTCAGCCACGACATGCGTG
TTTTGTCGTGTACGCGGGGCTTCCCCGGCGCCCAGAACGACAAGACCATC
ATCAAATTCGACAAGTTCGCGATGGCGGTTCGAAACGGCTGGTACAAGGA
CGTAGAGTACACTCTGAAGGGCGAGGACGGAGCGGACATCAAAGATGAAG
GACCATGGTTGATAGTGGACGGCGGATATCACAACGTGAGCGGGCTCGTG
TTCCACCGAATTTGTAGTGCAGAATGTCTTTCTTTGCACTCGGCGCGCGC
GCAAGGTTTGGTGTTCCGTTAGCTAGCATTAAGTAGCGTTTAGGAACAGG
AGACGAAACAACAGAGAGTCGCTACTGCTGTGCCTTGAAAACTACAGATC
TTGGCCCATGTCGCTTCCCCAACGTGCTGTGGTACCGGACAGGGGTTGCA
TTTGTTCAATTTCGGATGTGTTTTCATGTATATCACTGCACGCGTTCGCT
ACGGCAGTTTTGCGTTATATACCGTAGTTCGGTCGCTGCTCCCTCTGGCA
GGTGCTTTTTTTTGGGTGGATTGACAGACAGACACTGTATATGCAAAGGT
GCCTCCAAAAAAAAAGAGACGCCCAGTGGGGTCCGCGCGGTCCCCGCAAG
ACGTCAGTGTTGAAACGGTTCGGCAGTGTGAATTGACAACCGACAATTTG
GATGCCAGCCAATGCTTCCACCGAAGCGTGTCTTCGTACGTGCTTGTCTG
CCTGCTTGTAAGCGAGTTCGTGTACCTGTTGGCTTTCCCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGTCAGTGTTAAAACGGTTCGGCAGTG
TGAATTGACAACCGACAATTTGGATGCCAGCCAATGCTTCCACCGAAGCG
TGTCTTCGTACGTGCTTGTCTGCCTGCTTGTAAGCGAGTTCGTGTACCTG
TTGGCTTTCCCCTGGTGACGATGGTGCGGGAGACTGAACCCCCCCGTGTG
TAAATTTCGGAATCTCACGGTCGTCGTCAGGGCGGAATGTGATGGTGGTT
GATGTGCTGTTCTGCGGTAATAAACAGCGGTCCCCATGTGCGTCTTCAAG
GCTTGACTCAATTGTCGTACCCTTAACATGATCCCCACGGCCCGCCCACC
CGCCATGGCTCCCTCCTTGCTCAGTGGAAGCAGCTCCAGAGTCCGATCAG
GGCGCCATCAAACAAGGCCGAGTCAGGGTTCAAGAGACAGCTCGAGAGCG
TCCGCAAGGACTCGGAGTGCTGCTTCGGCGTCGTCAAGGGGCGGTTCAGG
ATCTGCAAGATGCAGTTCCTCTACAGGAAGAAAGAGAGGATCGACAACAT
CTTCTTCACGTGCATCATACTGCACAACATGCTTCTCGCCTACGACGGGA
TCGAGCTCTTGGAGCCGGACTGCGACTGGGCCGGAGCGGACGGCGACCTC
GACAAAAACATCGAGCACCCTGTAGTGCGGATGAGTGCGCCCACGCACGA
GGATGCAGTCGTGGAGTGTGATGACGGCTTCGACGCATTGAGGCAGAAGT
TGGTGACCAACTTCGCTTACCGATGGGGACAGGGGACCGTTGGGTGGAAG
AGGTCGTGATGACCCGTGGGAAGTCACATGGTGCTATGTTGATGGCGGGG
AGGTAGGGGGGCGGGGGGGCGTGTTGGAGGCGTTGTCCGCCCCTTCGGCT
GTAATTAGTGGCACTTTTTTTTCCCCCGTTGAAGACCACGTCCTTCTCCG
CCCCTCCGTAGTCAGCATCGTCATCTTTCGTTTTTGGTCCTTGTTGCCAA
GTCTTGCCTTTGCCTTTGCCTGGGCCTTGTTGATACTTTGCCGTGTTGTT
GTTGTCTCCTCGTCGTATGTGATCTCTTTTTTTATTTCGTATCTGGCCTG
TTTTCGATTCCCCTTTCCGCGGCTTGCGCGTCTTGGCACTTAGCATACTA
CAACTGTCTGTATTCTTGCGTATTGTCATCAGATTTGGCATTTGTGTCTC
GGTGTACTTTCCTTTCTCTGTCCATCTTTGCACCTTTTTGCTTGATGGGT
GTGGAACAGCCTCTAGTTTAGGCGGAGTTTTCTTCCCTCTTCTGGAGCAG
GACTGTCTTTTGTGTGCTTGCTCTTCGCCATTTTTATTATTGTGCCCCGA
GGGGTTAGCCCCATCGGGTTTCAGATTGTTTTAGTATCATATCGCGTGAG
TATATAATAGTTTTGTTTATTTTCTTTGCGGTTGCGACTGTATCCAAGTG
TGACAACAGGCTCCGTTGAGTTTCCTTTGCCTTTTGCGTTGCCTTGTTGG
GACCTTGCGTTTGCCGTATTGTTGTTGTCTCCTCGTAATCGTATCTCGAT
ATGTTTTTTTTTTCTTTCGTGTCTGGCCTGTTTTCGCTTCCCTCGTCTAC
AGGCTTGCGCGTCTTCGCCCTTCGCATGCAACTGTCGGCGGTCTTGCGCA
TTGGTATCGGTGTCTCGATGGATTTATTTTTCTGGGTCCATCCTTGCACC
TTCTTTCAACTAACCCTATTTTTTTTTCTGACGGGTGCGGGAAGCCTCTA
GGCTATGTAGCCGGAGTTTCCTTCGCTCTGCTGGCGGAGGACTGTTATAT
ATTGCTTGTTTTTCGCAGCATTATTTTTGTGTCCCGATTAGACTCAGCAC
GGTTCGGTTTTTGTTAGCATCGCATAACGCGTGCGCACAATAATTTGTTT
ATTTTTTTTGCGGGGTCGAGTGTACCCAAATGTGTGGCCACAGGCTCCAA
CGGATGTTTTGGAAAAGAGAGCTACAGCAGTACATGCCACGACACCGAAA
AACGAAACGTGCACCTGCACAATTTGTGGTTTAGTGGTCCGGCAGGTAAA
AACTTGTCATGCACGTCATGTTGTGTGCAGGGTGGCGAAACACCGGTACT
GCTGTGTTGGCCCGTA
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Coding sequence (CDS) from alignment at Scaffold_499:1314362..1317627-

>EsuBft1044_16a-0001 ID=EsuBft1044_16a-0001|Name=EsuBft1044_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=612bp|location=Sequence derived from alignment at Scaffold_499:1314362..1317627- (Ectocarpus subulatus male Bft15b)
ATGAAGTCCGCAAACGAATCGTGTCCCTGGCCGCCGTTGTCTGGTGATTT
ATTCGAACAGGTTTTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATT
TCGACGATGTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCAC
ATGTTCCACAAGTTCACGGAGAGATTCGCGCACACTCTCCAGAGTCCGAT
CAGGGCGCCATCAAACAAGGCCGAGTCAGGGTTCAAGAGACAGCTCGAGA
GCGTCCGCAAGGACTCGGAGTGCTGCTTCGGCGTCGTCAAGGGGCGGTTC
AGGATCTGCAAGATGCAGTTCCTCTACAGGAAGAAAGAGAGGATCGACAA
CATCTTCTTCACGTGCATCATACTGCACAACATGCTTCTCGCCTACGACG
GGATCGAGCTCTTGGAGCCGGACTGCGACTGGGCCGGAGCGGACGGCGAC
CTCGACAAAAACATCGAGCACCCTGTAGTGCGGATGAGTGCGCCCACGCA
CGAGGATGCAGTCGTGGAGTGTGATGACGGCTTCGACGCATTGAGGCAGA
AGTTGGTGACCAACTTCGCTTACCGATGGGGACAGGGGACCGTTGGGTGG
AAGAGGTCGTGA
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