EsuBft1044_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1044_15a-0001
Unique NameEsuBft1044_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:1309983..1313428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog28532.XP_010532980.1
ProteomeIdEsuBft1044_15
Protein domainsIPR018289
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl35493|Streptophyta
Length117
Hectar predicted targeting categoryother localisation
Evalue2.66e-11
EggNOG OGs2CN5X@1|root,2QU1T@2759|Eukaryota,37T40@33090|Viridiplantae,3GGBN@35493|Streptophyta,3HVMH@3699|Brassicales
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_15aEsuBft1044_15aEctocarpus subulatus male Bft15bgeneScaffold_499 1309983..1313428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_15a-0001EsuBft1044_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 1309983..1313428 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_15a-0001-exonagat-exon-23631Ectocarpus subulatus male Bft15bexonScaffold_499 1309983..1310580 +
EsuBft1044_15a-0001-exonagat-exon-23632Ectocarpus subulatus male Bft15bexonScaffold_499 1311262..1311272 +
EsuBft1044_15a-0001-exonagat-exon-23630Ectocarpus subulatus male Bft15bexonScaffold_499 1311863..1312180 +
EsuBft1044_15a-0001-exonEsuBft1044_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 1313107..1313325 +
EsuBft1044_15a-0001-exonagat-exon-23633Ectocarpus subulatus male Bft15bexonScaffold_499 1313396..1313428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_15a-0001-cdsEsuBft1044_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 1309983..1310580 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1044_15a-0001 ID=EsuBft1044_15a-0001|Name=EsuBft1044_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1179bp|location=Sequence derived from alignment at Scaffold_499:1309983..1313428+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCATCGTCGTCGGCGGAAGCGGCACCAGAGACTAGTAGTGCCGC
GCCGTCGCTGTCGGCGACGCTGCCGAAGGTAGGGGACAGCTTCGCCTGTA
CAAGGTCGCTGAGGCTTGGCCGCGAGAGGGCTCTCTTGTCGCAAGGGCGG
ACGCTTGTTTCCGACTTTCGAAAAGGTGGCAGCCATGCGAAGCTCTTCCG
CTGCTCGGGGGCCGTCATCGTCAAGGGCCAGCAGTCTACAGGAGGGTGCC
AGGTACTCATCCGTGCCAACAAGCGTAAAGACAAGCACTGGTACATCACC
GAAACACAGTACGAGCATTCATCGTGTGCCGGTGGCAAGAAGCCAAGTGT
TGCCGCGTTGGCCAAGGAAGGCGAGGTGGTCGTGAACGCCAACCGCGAGA
TCACCGCCGGTGGGCTTGTGAAGCAGCTGAGGGGAGCCCACGGGGTGGAG
CTGACGCCGCACACGGCGAACCGTGTCAAGCGTAGCGTCGTCGGTGTCAG
CGAAGAAGCGCAGAACGAGGGGTACCAACGACTCCAGAGCTCCCTGGACC
AGCTTGCAGAGGCCAGCCCGGGCACGGTCGTCCACTGCGAGGGGAGTGGG
GTGCAGCAGGTGTTGTGCATGGATTTTGCACACATGAAGGGAGAGTGGAA
CGGGACGATCGGCGCGATGACCACGAAGAGCTCCGACAACACCATCGTGC
ACCTGGCCACGTGCATCGTGGCGAAGGAGAATGGCAACGCCTACCGGTAC
CTCATCGACAACGCGCTCAAGAACCCGACGGTGGCTGCATTTCTGAAGAA
GCCGAGCACGACCATCATCACTGACAAGCACAAGGGATCGGAGTCGGCGG
TGCCGGACGGGCTGGACGAGGCGGAGTACCTTACGTGTGCGGAGCACATG
TTGAAGAACTGCGGGGCTGTCGGGCCGGGCGGGCGTATGCACTTCTACCA
GGCCGCAAGGGCTCCAGACAAGGCCACCTGCGAGTTCCACCTCAACAAGA
TCAAGGACCTCAACACAGCGGCCTACGAGAAGGTGGCGTCCGCCTCCCGC
GAGAAGTGGGCGGTGTACGCCACGAGAGGAAACGTCGTGCGGGACCAGGT
CAACTCCAACATGGCGGAGAGCTTGAACCATGCCCTGGGTCCGGATGTGC
TTCCGGCTCCGTTTCCGCCAGCTTTGTAA
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protein sequence of EsuBft1044_15a-0001

>EsuBft1044_15 ID=EsuBft1044_15|Name=EsuBft1044_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=392bp
MSSSSSAEAAPETSSAAPSLSATLPKVGDSFACTRSLRLGRERALLSQGR
TLVSDFRKGGSHAKLFRCSGAVIVKGQQSTGGCQVLIRANKRKDKHWYIT
ETQYEHSSCAGGKKPSVAALAKEGEVVVNANREITAGGLVKQLRGAHGVE
LTPHTANRVKRSVVGVSEEAQNEGYQRLQSSLDQLAEASPGTVVHCEGSG
VQQVLCMDFAHMKGEWNGTIGAMTTKSSDNTIVHLATCIVAKENGNAYRY
LIDNALKNPTVAAFLKKPSTTIITDKHKGSESAVPDGLDEAEYLTCAEHM
LKNCGAVGPGGRMHFYQAARAPDKATCEFHLNKIKDLNTAAYEKVASASR
EKWAVYATRGNVVRDQVNSNMAESLNHALGPDVLPAPFPPAL
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mRNA from alignment at Scaffold_499:1309983..1313428+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1044_15a-0001 ID=EsuBft1044_15a-0001|Name=EsuBft1044_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3446bp|location=Sequence derived from alignment at Scaffold_499:1309983..1313428+ (Ectocarpus subulatus male Bft15b)
ATGTCGTCATCGTCGTCGGCGGAAGCGGCACCAGAGACTAGTAGTGCCGC
GCCGTCGCTGTCGGCGACGCTGCCGAAGGTAGGGGACAGCTTCGCCTGTA
CAAGGTCGCTGAGGCTTGGCCGCGAGAGGGCTCTCTTGTCGCAAGGGCGG
ACGCTTGTTTCCGACTTTCGAAAAGGTGGCAGCCATGCGAAGCTCTTCCG
CTGCTCGGGGGCCGTCATCGTCAAGGGCCAGCAGTCTACAGGAGGGTGCC
AGGTACTCATCCGTGCCAACAAGCGTAAAGACAAGCACTGGTACATCACC
GAAACACAGTACGAGCATTCATCGTGTGCCGGTGGCAAGAAGCCAAGTGT
TGCCGCGTTGGCCAAGGAAGGCGAGGTGGTCGTGAACGCCAACCGCGAGA
TCACCGCCGGTGGGCTTGTGAAGCAGCTGAGGGGAGCCCACGGGGTGGAG
CTGACGCCGCACACGGCGAACCGTGTCAAGCGTAGCGTCGTCGGTGTCAG
CGAAGAAGCGCAGAACGAGGGGTACCAACGACTCCAGAGCTCCCTGGACC
AGCTTGCAGAGGCCAGCCCGGGCACGGTCGTCCACTGCGAGGGGAGTGGT
TGGTGTCGGTGCGGTGTGGGATTTTTGACTGGCCCTTGTTGATTTGATTT
GGGGTTGATTTTCATGAGAGCAGCAGGCGCATTGTGCCTAGGTGCGAACC
AAAACTGGCGTGTGCGGACTGGCGTGTGCGGACAGGCGGTCGTGGTTGGT
CGGACTCGGTGCCGAAGTGGGAGTGAGCTGAGCTTGAGAAAACGCGGTGC
CAACAGAAAGAGTTCGGCCGCAGAGCTCCTGAAATTTAACCCGTTTTCTG
CTGCGCATGTACTGCTGTAGCGAGCTGGTGCCGAGGTGGAAGGACAAATG
GAGCCAAATGGACGAGTGGGTAGTGTTTAGTTCTGTCGTGTTGTCATTCG
TGTAAGCCCTCGTTGTCCGTCCCCGGATATCTAGAAGCTAAAGATTGCGC
GGGGCCCGCGAAGGGATTACAGAATAACTTATTTTCGCGGGCATGCTATT
TTCGACCCCACGGCCATAAATTGGCCATCCGCCTGCGCGCATTACATACT
TGTCGTTTTCTAACCTGTGGTGACATCGTGCAATTGTCCCTCGCGTGGTG
TTTTTCCTTCCTTCTTCTCCATTTCGTCTGTTGATACCTGCCGATACCCT
TCTTCGGAGTTTGATGCACAAGGCCACTTTGTTCGCTGTTTCTTCATGGT
GGGGGGGGTGGCGTGCTTCGCTTGTGCAGGGGTGCAGCAGGTGGGTGCGG
TGCGGTGCGGTTGTTCTTTGCTGGCCCTTCTTGGTTGTGGGTGTTGGCCT
GGAGCGTGGTTGACTTGTCCTTCTGAATGGCCCTCTTTCCATGTCCTCTT
GAAGTACTACGGAGCACACCTCTGCCTCTCGGTGTACTCCCCACCATTAA
ATTGGTCCATTCATCTTCCATTACTCTTGCTGTTGAGTACTATACGGGGT
CGGGAGGGGCGCAGATGAGAAGGTGCTGGCGCGCCGGGGGTGGGGGGGGG
GCCCTTGTCTACTACTCTGTATTTTGTCTCGCGCACACGGATGTATGTGT
GCGTCTGCCTCCCAGTCTGGCGGGCCCCAACGTATTCGTCGTGCTTGCTT
TCCATCTCAGCGCATGAACCCATCCATGCTTCCTTTCCCCTGCCATTTTT
GTATGGCGTCTGCGTCGGGACAAGCTCGCGTCTGCTGCGCCACGTCTGAT
GCCTTTTTCTCCTCGCGTGCCTGCGAGCGATTCGCATCCCACCATCTCCA
GCACGGAGCGTCGTTCGAACACAAGTCAATGTTTTCCCATGTTTTCTCCA
TGCCCTCGTGTTGCACCCCGAACAATTCAGGTGTTGTGCATGGATTTTGC
ACACATGAAGGGAGAGTGGAACGGGACGATCGGCGCGATGACCACGAAGA
GCTCCGACAACACCATCGTGCACCTGGCCACGTGCATCGTGGCGAAGGAG
AATGGCAACGCCTACCGGTACCTCATCGACAACGCGCTCAAGAACCCGAC
GGTGGCTGCATTTCTGAAGAAGCCGAGCACGACCATCATCACTGACAAGC
ACAAGGGATCGGAGTCGGCGGTGCCGGACGGGCTGGACGAGGCGGAGTAC
CTTACGTGTGCGGAGCACATGTTGAAGAACTGCGGGGCTGTCGGGCCGGT
GAGGCGAGGTCATGGGTTGTGGTGTTTAGCTCAGGCGTGTGGTGTTCGGC
TGCTTCCCTGATACCAAGGAAATGCGATTGTAGGCAAGCCACATCCATAT
CTCGTTGCCTGGCCACCTCGTTGCGGTAATCATGTTTCCCCCCCGCGTCT
TTTATACCTCTCGGGTGACATTGGTGAAGGGTGTTCGGGGTCGCCCGGCG
TGTGCAATCTATGCGTGTCTAATGGCTCAGGGCGATTTAGTGCGCGGCAT
TGCTCTTGACGATGTACCGTAATATCCTCAGAGATGTCCCCCAATGAATT
GCCCCCCCCGCCCAAATCTGCCCGAAATGAGCATAAAAACCATGAAATTT
CCGGGGGATTTTCTCCTTTTTTGTTGACCCCTTTTTTTTCGTTTTTTTTT
TTCCTTTTTAGGCCTGTTCTCTATGTATGTACCCCTTACCGTGGAGATAC
CCCCGGAGACAGCTTTTCCTGCGCGTCGAAACGTCTCCCCTGGGGATGAA
TGCACTTTAACCGGTGTACCCTCCCTTGGTTGTCAGAGGAGGTGTCGTTG
CCGCTACCCGAGGCAGGGCGTAGCTCCCCCGAGCACTTGTTGTGCATCTT
GAATTGTCATTTCGTAGAGTGTGTGTACACCAGACGTCATAGAGCTGCTG
AGGTGAGGTTTGTGTGCATGAGGGTGGTGTGTGTGTTTTGTCGGTAGATC
TCCCCGGGGCATCGTGTCCCTGGGGTGTATGTGTGACCCTAACCCTAAGA
TGTCCCCCCTGCCGTAGAGATAGTCCCGGGGATATCGTTGTCAACGAAAA
AAGAAGGAAAAAATGTCCCCCCCAAGGATCGGGTTAGTCGAGCAGGGTCG
ATTGCACCGCCGCATTGAAATACGCCCCTACACGTTTCTTACTTACTCTT
CTCACCGGGTGCTTTTGTGCACAGGGCGGGCGTATGCACTTCTACCAGGC
CGCAAGGGCTCCAGACAAGGCCACCTGCGAGTTCCACCTCAACAAGATCA
AGGACCTCAACACAGCGGCCTACGAGAAGGTGGCGTCCGCCTCCCGCGAG
AAGTGGGCGGTGTACGCCACGAGAGGAAACGTCGTGCGGGACCAGGTCAA
CTCCAACATGGCGGAGAGCTTGAACCATGCCCTGGGTCCGGATGTGAGCA
GTCGTATGCGTGTGCGGTTGTTTCTCTGGGTTGTTTTCTTGTTTTCGCGG
CGTCCCCACGTAGGTGCTTCCGGCTCCGTTTCCGCCAGCTTTGTAA
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Coding sequence (CDS) from alignment at Scaffold_499:1309983..1313428+

>EsuBft1044_15a-0001 ID=EsuBft1044_15a-0001|Name=EsuBft1044_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1179bp|location=Sequence derived from alignment at Scaffold_499:1309983..1313428+ (Ectocarpus subulatus male Bft15b)
ATGTCGTCATCGTCGTCGGCGGAAGCGGCACCAGAGACTAGTAGTGCCGC
GCCGTCGCTGTCGGCGACGCTGCCGAAGGTAGGGGACAGCTTCGCCTGTA
CAAGGTCGCTGAGGCTTGGCCGCGAGAGGGCTCTCTTGTCGCAAGGGCGG
ACGCTTGTTTCCGACTTTCGAAAAGGTGGCAGCCATGCGAAGCTCTTCCG
CTGCTCGGGGGCCGTCATCGTCAAGGGCCAGCAGTCTACAGGAGGGTGCC
AGGTACTCATCCGTGCCAACAAGCGTAAAGACAAGCACTGGTACATCACC
GAAACACAGTACGAGCATTCATCGTGTGCCGGTGGCAAGAAGCCAAGTGT
TGCCGCGTTGGCCAAGGAAGGCGAGGTGGTCGTGAACGCCAACCGCGAGA
TCACCGCCGGTGGGCTTGTGAAGCAGCTGAGGGGAGCCCACGGGGTGGAG
CTGACGCCGCACACGGCGAACCGTGTCAAGCGTAGCGTCGTCGGTGTCAG
CGAAGAAGCGCAGAACGAGGGGTACCAACGACTCCAGAGCTCCCTGGACC
AGCTTGCAGAGGCCAGCCCGGGCACGGTCGTCCACTGCGAGGGGAGTGGG
GTGCAGCAGGTGTTGTGCATGGATTTTGCACACATGAAGGGAGAGTGGAA
CGGGACGATCGGCGCGATGACCACGAAGAGCTCCGACAACACCATCGTGC
ACCTGGCCACGTGCATCGTGGCGAAGGAGAATGGCAACGCCTACCGGTAC
CTCATCGACAACGCGCTCAAGAACCCGACGGTGGCTGCATTTCTGAAGAA
GCCGAGCACGACCATCATCACTGACAAGCACAAGGGATCGGAGTCGGCGG
TGCCGGACGGGCTGGACGAGGCGGAGTACCTTACGTGTGCGGAGCACATG
TTGAAGAACTGCGGGGCTGTCGGGCCGGGCGGGCGTATGCACTTCTACCA
GGCCGCAAGGGCTCCAGACAAGGCCACCTGCGAGTTCCACCTCAACAAGA
TCAAGGACCTCAACACAGCGGCCTACGAGAAGGTGGCGTCCGCCTCCCGC
GAGAAGTGGGCGGTGTACGCCACGAGAGGAAACGTCGTGCGGGACCAGGT
CAACTCCAACATGGCGGAGAGCTTGAACCATGCCCTGGGTCCGGATGTGC
TTCCGGCTCCGTTTCCGCCAGCTTTGTAA
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