EsuBft1044_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1044_11a-0001
Unique NameEsuBft1044_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:1272622..1276459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1044_11
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length179
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_11aEsuBft1044_11aEctocarpus subulatus male Bft15bgeneScaffold_499 1272622..1276459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_11a-0001EsuBft1044_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 1272622..1276303 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_11a-0001-exonEsuBft1044_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 1272622..1272867 -
EsuBft1044_11a-0001-exonagat-exon-23614Ectocarpus subulatus male Bft15bexonScaffold_499 1274006..1274143 -
EsuBft1044_11a-0001-exonagat-exon-23615Ectocarpus subulatus male Bft15bexonScaffold_499 1274396..1275024 -
EsuBft1044_11a-0001-exonagat-exon-23613Ectocarpus subulatus male Bft15bexonScaffold_499 1275679..1276459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_11a-0001-cdsEsuBft1044_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 1272622..1272867 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_11a-0001-exonagat-five_prime_utr-268Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 1276304..1276459 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1044_11a-0001 ID=EsuBft1044_11a-0001|Name=EsuBft1044_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1794bp|location=Sequence derived from alignment at Scaffold_499:1272622..1276459- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCGTCGTTGCGAGTTTGCGAGAGCGAGTTTTGGTCGTCGTTGTTGTAGC
CGCGCTCTGTCAAGCGTGCAACGAACCACAACTCGTGGCGTGAACAAGGC
TGGGCACAACGGAACGTCACTGTATCATCCACTGTGGAATCCTAAACGCG
TCAGAGATGGTGGAACTGGGGAACGATTCGGAGGATGAAGTCGAGGTGTT
GGATCTCACGACTCCGTTGCCTCCCGCCTCAAGGAGGTTGTGCCCAAGCC
CGACGGCGGCAACAGCAGTGGGAGCGGTGGCATCATCGCCTGCCAGCCCC
GTGGCCCGTGAGAGGAACGGAGGGGATGGAGTGAGCGATGGAAGCGGCAG
CGACAGCAACGATGATTTGTTCAGCATGGACATCAAGCCTCTGCGAGAGC
GGCTCCAGCAGACCTCGTCTACAACGGCAACAACATCCGCGGCAGGCGGA
CCGAGGCGTGACGGTAGTAGGGCCCCTTCTTCGTCTACGAACGCATCCCG
ATCACGACCCACTACGGCCGCGTCTACTGAGAGGTTACGTGTTCTGGATT
GTTCCTTCGACGAAGAGGAAGACGGCGTCTACGTCGGTGGAGGCAAAGGG
AAGGCGAGGGCCAAGGCAACGAAGGAGGGGATGGGCAGCGGCGGCGGCGG
CGGTAGCAGCGCTGCCACGGGTACCAGCAGTTGTGGCAGAGACAACGAGG
AGGAGGAGGAGGAGGCAGACTATACTTGCACGCAAGAGAGCCAAGTTGTT
GATCTTCTCAGCGACTCCGACGATGACGAAGGCGGGGTAGCGCCGGGCCG
CTCGCAGCTTTGGAGCCAAGGAGGAGCGGGTGCGAGGGCAACAGCGCAGC
AAGCCTCCAATAACGCAGGCGATAGCAACGACGGCAGCGACGACGACGAC
GACCCGTCAGTCCTTGAGAGAAACGGCGACGAAGATGACCCGGGTGCAGG
AGGAGCAGCAGCAGCGGACTCTCCCTCAGACCTCGACTTGGACTCTCTGC
TGCTGGCCTCCCAGGCGTCTTCCTGCGTCAGCATGTCCTCGCCCTCCCGT
CCCGTCCTCGGCGATGATGGAGCGGGAGCGCGGCAAGCGAGAGCGAAGAA
GCCTGGCGGCGGCGGGGAGGTGCGCGGAGTTGGAAATGCGAGCGCCTCAA
CGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACGTTGTC
GGTGTCCTTGACGACAGCAGCGACGATGACTTCTCGATGGACGGTGGGGG
GGGACGGGCGACGAGTTCGAGTTCGGTGTCGCGTCGAGGAGCGATTACTG
CCAGCGGTGGTAGCGATGCTTCGGTGGGCACGGCGACGGTTTCGAGGAAT
GAGAAAGCCCCCGCGCCAAAGGAGCCCGCGGCAAACAGGAAACGGCAGCG
GCAAGAGGCGGCCGCCGCCGCTAGGGAGCGGAAGGAGCAGGAGAAGCTGG
CGCGCAAGCGTGAGAAGGAACTGGAGAAGCGTGAGAGGGAACTGGCCAAG
CAGCGGGAGAAGGCCGAGAAGGCAGCCAAGACCAAGCGGGACCAGCAGGC
GCGTGGCAATTTCAGGAACGAGGAGGTCGCTTGCGTGATGGAACGACGCT
TCTTCAACAGCGCCCGCAACGCCTGCGCTCGCGCAGGAGCGGCCGAACAG
CAAGGCCACAAGGAAAAGTTCATGGTGGCCCCTGGTGATTGCGGGGCCGC
TGGGGCGGTCTGGTGGACTCGACGAGGTGCGGGAGGAAGGGGGAAAAGAC
CGCACGAGTGGCGGATGGATGGACAGATAGGCAGGCAGGCGTAG
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protein sequence of EsuBft1044_11a-0001

>EsuBft1044_11 ID=EsuBft1044_11|Name=EsuBft1044_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=545bp
MVELGNDSEDEVEVLDLTTPLPPASRRLCPSPTAATAVGAVASSPASPVA
RERNGGDGVSDGSGSDSNDDLFSMDIKPLRERLQQTSSTTATTSAAGGPR
RDGSRAPSSSTNASRSRPTTAASTERLRVLDCSFDEEEDGVYVGGGKGKA
RAKATKEGMGSGGGGGSSAATGTSSCGRDNEEEEEEADYTCTQESQVVDL
LSDSDDDEGGVAPGRSQLWSQGGAGARATAQQASNNAGDSNDGSDDDDDP
SVLERNGDEDDPGAGGAAAADSPSDLDLDSLLLASQASSCVSMSSPSRPV
LGDDGAGARQARAKKPGGGGEVRGVGNASASTAAAAAAAAAAAAADVVGV
LDDSSDDDFSMDGGGGRATSSSSVSRRGAITASGGSDASVGTATVSRNEK
APAPKEPAANRKRQRQEAAAAARERKEQEKLARKREKELEKRERELAKQR
EKAEKAAKTKRDQQARGNFRNEEVACVMERRFFNSARNACARAGAAEQQG
HKEKFMVAPGDCGAAGAVWWTRRGAGGRGKRPHEWRMDGQIGRQA
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mRNA from alignment at Scaffold_499:1272622..1276459-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1044_11a-0001 ID=EsuBft1044_11a-0001|Name=EsuBft1044_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3838bp|location=Sequence derived from alignment at Scaffold_499:1272622..1276459- (Ectocarpus subulatus male Bft15b)
TTCGTCGTTGCGAGTTTGCGAGAGCGAGTTTTGGTCGTCGTTGTTGTAGC
CGCGCTCTGTCAAGCGTGCAACGAACCACAACTCGTGGCGTGAACAAGGC
TGGGCACAACGGAACGTCACTGTATCATCCACTGTGGAATCCTAAACGCG
TCAGAGATGGTGGAACTGGGGAACGATTCGGAGGATGAAGTCGAGGTGTT
GGATCTCACGACTCCGTTGCCTCCCGCCTCAAGGAGGTTGTGCCCAAGCC
CGACGGCGGCAACAGCAGTGGGAGCGGTGGCATCATCGCCTGCCAGCCCC
GTGGCCCGTGAGAGGAACGGAGGGGATGGAGTGAGCGATGGAAGCGGCAG
CGACAGCAACGATGATTTGTTCAGCATGGACATCAAGCCTCTGCGAGAGC
GGCTCCAGCAGACCTCGTCTACAACGGCAACAACATCCGCGGCAGGCGGA
CCGAGGCGTGACGGTAGTAGGGCCCCTTCTTCGTCTACGAACGCATCCCG
ATCACGACCCACTACGGCCGCGTCTACTGAGAGGTTACGTGTTCTGGATT
GTTCCTTCGACGAAGAGGAAGACGGCGTCTACGTCGGTGGAGGCAAAGGG
AAGGCGAGGGCCAAGGCAACGAAGGAGGGGATGGGCAGCGGCGGCGGCGG
CGGTAGCAGCGCTGCCACGGGTACCAGCAGTTGTGGCAGAGACAACGAGG
AGGAGGAGGAGGAGGCAGACTATACTTGCACGCAAGAGAGCCAAGTTGTT
GATCTTCTCAGCGACTCCGACGATGACGAAGGTGATCATGTGTAGTAAGG
GGCATGGGAAAGTTCTTGCGCGTTCATGAGGAACCAGAGCGTGCTGGACA
TCACTGCTGCTGGTCGTGATTGTTAGACAGTAAACATAACCTCACAGGAA
GACTACCGCTTTTTAGCTTTGCACCTAAAGTTATCTTGGCATTCGTTTTG
CATCTACATACATGCATCGTCGATACTGCCCCTGACTTGCTGTCAAAACG
TGGTCCCAGACGCCAGGCTTTTGCGAAGGCGGCTATACAAGCTCGCTGCG
GCGAGATTGTAGAGAAGGTTGCATACATCATCACAAGTCCAGGTCAAGAG
CGACACCCTCCATCGATAAGTCTACGCCCCCTCCCTACTGCTACGTACCC
TTTTTTGCCGACCTTTACTCCGCCCGAGCTCAGCTCCACCCCGTAGCTGG
TGCGCAAGAATTGCAGGTTGTGGTGCTGGCGTCCCTGCCGTAATCTCGGG
TCTACAAAGCACGAGCCTCGACATATGCATTGAAGGCAACCAGACCGCTA
CCCTAGAACACACGAACCTCCATTCATAGTTCGCAACAAGGCCACGTTCG
CGACGACCCAAACCACTCAAAGCATCTTCTTGCATGCACACATCGCGTAA
AAAGTCGTCGCGCCTCCATCAACGAACCACCGCAGGCGGGGTAGCGCCGG
GCCGCTCGCAGCTTTGGAGCCAAGGAGGAGCGGGTGCGAGGGCAACAGCG
CAGCAAGCCTCCAATAACGCAGGCGATAGCAACGACGGCAGCGACGACGA
CGACGACCCGTCAGTCCTTGAGAGAAACGGCGACGAAGATGACCCGGGTG
CAGGAGGAGCAGCAGCAGCGGACTCTCCCTCAGACCTCGACTTGGACTCT
CTGCTGCTGGCCTCCCAGGCGTCTTCCTGCGTCAGCATGTCCTCGCCCTC
CCGTCCCGTCCTCGGCGATGATGGAGCGGGAGCGCGGCAAGCGAGAGCGA
AGAAGCCTGGCGGCGGCGGGGAGGTGCGCGGAGTTGGAAATGCGAGCGCC
TCAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACGT
TGTCGGTGTCCTTGACGACAGCAGCGACGATGACTTCTCGATGGACGGTG
GGGGGGGACGGGCGACGAGTTCGAGTTCGGTGTCGCGTCGAGGAGCGATT
ACTGCCAGCGGTGGTAGCGATGCTTCGGTGGGCACGGCGACGGTTTCGAG
GAATGAGAAAGCCCCCGCGCCAAAGGAGCCCGCGGCAAACAGGAAACGGC
AGCGGCAAGAGGCGGTGCGTATCGTTGCACTACCGAAGCATCGACCGCAC
CAACCGCCCGAAGGTCTCTGTGGGTTTACTGACGTATTTGATTGGCATCG
ACCGCGCTAACAGGCTACAGGCCACCCTCTCCGTTTTTCACGAAGAATAG
GCAATAGCGTCGATCGCCGATGATTGTTTTAGCCACGAGCCAACACTAAT
CCGTCTGTTGTACAAATGCTCCTCTGTTCTGGTGTGGTCACGCTGCCGGC
CGTCCGCCGCGCCCAGGCCGCCGCCGCTAGGGAGCGGAAGGAGCAGGAGA
AGCTGGCGCGCAAGCGTGAGAAGGAACTGGAGAAGCGTGAGAGGGAACTG
GCCAAGCAGCGGGAGAAGGCCGAGAAGGCAGCCAAGACCAAGCGGGACCA
GCAGGTGAGACGCCTGTTGTTTCCGCGCCGCCATGTGCCGAAGGACGCTC
CGTCGGTTCGGTTCGACGGCGGCAGTCTCTCGAGCATGGCAGCCTTTAGA
TTCGCGAACGAGCAGTCGACGCTCATGGGATCTTGATTATGGGACAGAAG
GCGGGCAACGGCGCAACGGCGTCGAGCTGCCGTATCTGTTGTTCCACACC
CGACGCTGCTTCAGGCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCNNNNNNNNNNCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCCGTCTCTCTC
TCTCTCTCTCTCCGTCTGTCTCTGTCTGTCTCTGTCTGTCTCTCTCTTGT
CTCTACCTCTCTCTTTGCCATACCACTCAACAATAACTCCCACTAGCCGC
TTTTTGCCCTCTTCCTCGGGCCTTTTCATGGAAGCAACGCGACGCACACT
GACTTGGCGAAATTTGCTCGTACAAACCATCGAGTCTGCTTCTCTGTGCT
GCTGAGTTATTTTGTGTTTGCCTCCCCCCCCCCCCCCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCTCCGCCCCCCCCGGTGTTTGCCAT
CGGGGTTGGGTTTTCGTCTCTTGGCAACGACGTTGTAAAATAAGCCAATT
CGCTTCGTGAACTCGGCAACCAGGTTACCGGGTTTTTTTTTGGTGGTTAC
CATAATGGTGGTCGAGTAGATCATGTTGTGCGGGGTCGAGAACTCTCACT
CCGCGCAAGGGGGATGATCGAACCACGTTGTGTTAAAACGGTCAAGCACC
CTCGAGGCAGTTACACAGCCAGTGATTACAACTGTCTCAGGAAGTGAAAG
CACCAGAAAATAAAATAAGTCATACGCAGCTGTCATCCGTACGCCTGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCCCCCCCCCCCCCCCTCCCCGTGGTGGTTTCCTTAGGCGCGTGG
CAATTTCAGGAACGAGGAGGTCGCTTGCGTGATGGAACGACGCTTCTTCA
ACAGCGCCCGCAACGCCTGCGCTCGCGCAGGAGCGGCCGAACAGCAAGGC
CACAAGGAAAAGTTCATGGTGGCCCCTGGTGATTGCGGGGCCGCTGGGGC
GGTCTGGTGGACTCGACGAGGTGCGGGAGGAAGGGGGAAAAGACCGCACG
AGTGGCGGATGGATGGACAGATAGGCAGGCAGGCGTAG
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Coding sequence (CDS) from alignment at Scaffold_499:1272622..1276459-

>EsuBft1044_11a-0001 ID=EsuBft1044_11a-0001|Name=EsuBft1044_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1638bp|location=Sequence derived from alignment at Scaffold_499:1272622..1276459- (Ectocarpus subulatus male Bft15b)
ATGGTGGAACTGGGGAACGATTCGGAGGATGAAGTCGAGGTGTTGGATCT
CACGACTCCGTTGCCTCCCGCCTCAAGGAGGTTGTGCCCAAGCCCGACGG
CGGCAACAGCAGTGGGAGCGGTGGCATCATCGCCTGCCAGCCCCGTGGCC
CGTGAGAGGAACGGAGGGGATGGAGTGAGCGATGGAAGCGGCAGCGACAG
CAACGATGATTTGTTCAGCATGGACATCAAGCCTCTGCGAGAGCGGCTCC
AGCAGACCTCGTCTACAACGGCAACAACATCCGCGGCAGGCGGACCGAGG
CGTGACGGTAGTAGGGCCCCTTCTTCGTCTACGAACGCATCCCGATCACG
ACCCACTACGGCCGCGTCTACTGAGAGGTTACGTGTTCTGGATTGTTCCT
TCGACGAAGAGGAAGACGGCGTCTACGTCGGTGGAGGCAAAGGGAAGGCG
AGGGCCAAGGCAACGAAGGAGGGGATGGGCAGCGGCGGCGGCGGCGGTAG
CAGCGCTGCCACGGGTACCAGCAGTTGTGGCAGAGACAACGAGGAGGAGG
AGGAGGAGGCAGACTATACTTGCACGCAAGAGAGCCAAGTTGTTGATCTT
CTCAGCGACTCCGACGATGACGAAGGCGGGGTAGCGCCGGGCCGCTCGCA
GCTTTGGAGCCAAGGAGGAGCGGGTGCGAGGGCAACAGCGCAGCAAGCCT
CCAATAACGCAGGCGATAGCAACGACGGCAGCGACGACGACGACGACCCG
TCAGTCCTTGAGAGAAACGGCGACGAAGATGACCCGGGTGCAGGAGGAGC
AGCAGCAGCGGACTCTCCCTCAGACCTCGACTTGGACTCTCTGCTGCTGG
CCTCCCAGGCGTCTTCCTGCGTCAGCATGTCCTCGCCCTCCCGTCCCGTC
CTCGGCGATGATGGAGCGGGAGCGCGGCAAGCGAGAGCGAAGAAGCCTGG
CGGCGGCGGGGAGGTGCGCGGAGTTGGAAATGCGAGCGCCTCAACGGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACGTTGTCGGTGTC
CTTGACGACAGCAGCGACGATGACTTCTCGATGGACGGTGGGGGGGGACG
GGCGACGAGTTCGAGTTCGGTGTCGCGTCGAGGAGCGATTACTGCCAGCG
GTGGTAGCGATGCTTCGGTGGGCACGGCGACGGTTTCGAGGAATGAGAAA
GCCCCCGCGCCAAAGGAGCCCGCGGCAAACAGGAAACGGCAGCGGCAAGA
GGCGGCCGCCGCCGCTAGGGAGCGGAAGGAGCAGGAGAAGCTGGCGCGCA
AGCGTGAGAAGGAACTGGAGAAGCGTGAGAGGGAACTGGCCAAGCAGCGG
GAGAAGGCCGAGAAGGCAGCCAAGACCAAGCGGGACCAGCAGGCGCGTGG
CAATTTCAGGAACGAGGAGGTCGCTTGCGTGATGGAACGACGCTTCTTCA
ACAGCGCCCGCAACGCCTGCGCTCGCGCAGGAGCGGCCGAACAGCAAGGC
CACAAGGAAAAGTTCATGGTGGCCCCTGGTGATTGCGGGGCCGCTGGGGC
GGTCTGGTGGACTCGACGAGGTGCGGGAGGAAGGGGGAAAAGACCGCACG
AGTGGCGGATGGATGGACAGATAGGCAGGCAGGCGTAG
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