EsuBft1044_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1044_10a-0001
Unique NameEsuBft1044_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:1267355..1269186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog36331.EPrPI00000015522
ProteomeIdEsuBft1044_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl121069|Pythiales
Length130
Hectar predicted targeting categoryother localisation
Evalue1.13e-06
EggNOG OGs2CG82@1|root,2RUTV@2759|Eukaryota,1MFW7@121069|Pythiales
Date last modified2016-06-14
Date creation2016-06-14
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_10aEsuBft1044_10aEctocarpus subulatus male Bft15bgeneScaffold_499 1267355..1269186 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_10a-0001-exonEsuBft1044_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 1267355..1268552 -
EsuBft1044_10a-0001-exonagat-exon-23612Ectocarpus subulatus male Bft15bexonScaffold_499 1269079..1269186 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_10a-0001-exonagat-three_prime_utr-430Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 1267355..1268318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_10a-0001-cdsEsuBft1044_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 1268319..1268552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_10a-0001EsuBft1044_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 1268319..1269186 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1044_10a-0001 ID=EsuBft1044_10a-0001|Name=EsuBft1044_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1306bp|location=Sequence derived from alignment at Scaffold_499:1267355..1269186- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAAGGATGATGTTACGGAGCTCCACTGCGTCGCTCGGAGCAAGAC
CGAGGCGAGAGGGTCCGAGCGGTTCCCCGAGAAGGAGAAGGAACTCATGG
ACACCTGGGTGAGAATGCTCGAACAAGTGCAGCACGTGAGCGGCAACAAG
GCCGTCGAGATCGCTGCGCATTACCCTCTCCCCCGCGACCTGGTGGCCGC
CCTGTCGGACCCATCCGTGCCAGAAGCGGATAGGGCCGGCCTGCTGCAGA
GGAAGATGGGCAGCAGCTCGGAGCAGAGGAAGTGCGCGCGGCGGGTGTTT
GAACTCTTCACCCAGGAGGACGGAGATTTCGTGATCGATTGAAACGGTTG
GCAGCAGCTGGACTTGCGGCACTCGCAGTGTGCCTCCGCCGCCGCCGCCG
CTGCCGCTGCCGCCGCTCCTAAAAAGCGGAAGGATAAAATCAATTTTTCG
TGGTAATGGCTGCTTTGGGATACGTTCTTGTTTGCCTTGTCTTTGCGACG
AAACTACTGTAGGCGCCGCGCAATCACCTGTGCCGGGCGTCTGAAGCCTC
GAAACAGCGTGTGTGTGCAGATATGTTCACGGTGAAGGCTACGGGGCATG
GCGACCGCTCGACGTTCACAAACGCGGAGCAACGTGTTACGTGCTGTAGT
TTTTGTGTTGTCCACATGGGCGACCTTGTCTGTGGTTTCTTCGCCTGGTC
CGCCCTAAACGCCTGACCTGGCCTCGACTGTCTCTCCTTCCGTGCCGTTA
ACGCTTCGCTTGTTGATGCGGTCATGTGTTTGTAGGGTTGCACATCTCGG
TGTCCACGTGTGTATGGTGAGACAAATGCCTCTTAAATGTCAGTAACAAA
GAAGTGCTTCCTGTGGAGGCTTCGCGCTTTCGAAGGCCGTAGTAATGAGA
ATGTTTGATAACAAAAGCAGCTCCTTCGTTTGGAGGCTTCGTGCTTTCGA
AGGCCGTAGTATTGCCAACGTTTGGAGTGCGAACCGTAGCCGGCAAGCCG
TCCTCGTGTAGAACATGGTACGTGGTGGTGAACTTCCGCGTGCCCCGAGT
AAACCGACGCTCCGGGCTGATACTTATCGAACGCTGGTAGCTTGTTTTTT
GCGAGGGTAGGCCCTGTTATGTGTGTGTGATTCTTGTTTTTTGTGCTTTG
TTTAGCCATCACATGCGCATGTTCAAGTGGTTTGCCAATCCGGTGTTTCT
GGAGAGAGTGGTGATATGTACGACCGATTCGGCGTTGATACATGGGCGTT
GTGCCTGTATTTTTACTTCGTGGCTGTGGCAATCAAGCACACCCGCTCTC
GTTCAA
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protein sequence of EsuBft1044_10a-0001

>EsuBft1044_10 ID=EsuBft1044_10|Name=EsuBft1044_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=113bp
MSKDDVTELHCVARSKTEARGSERFPEKEKELMDTWVRMLEQVQHVSGNK
AVEIAAHYPLPRDLVAALSDPSVPEADRAGLLQRKMGSSSEQRKCARRVF
ELFTQEDGDFVID
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mRNA from alignment at Scaffold_499:1267355..1269186-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1044_10a-0001 ID=EsuBft1044_10a-0001|Name=EsuBft1044_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1832bp|location=Sequence derived from alignment at Scaffold_499:1267355..1269186- (Ectocarpus subulatus male Bft15b)
ATGTCAAAGGATGATGTTACGGAGCTCCACTGCGTCGCTCGGAGCAAGAC
CGAGGCGAGAGGGTCCGAGCGGTTCCCCGAGAAGGAGAAGGAACTCATGG
ACACCTGGGTGAGTCGGTGAATACCACCCCCCTGGAAAAACCGGAGAACG
TCATGTCCCATCTGCTCTTTGAGAGTTAATTCTCTATGGGTTGTTAAGAG
TGGAAAGAGCTTGCGGCGACGGCACGGACGTGGGATGTCATACTTTTCGG
TGTTGTGACAACGAGGAAGTTACGCGGAGAACGTATGTTGAACACGATTC
CTCGCCTTGGAACCACCAACTGGGCCATTCACGCTGTTGCAGCAGTCTTG
GGCGACTGGGCATCCGAGCGGTACAGTACAACCCCCCGCCATAAAACATC
CCCCAATGTACGGCATTCCCACCTCCCTCCCCCCAAGTCACCGAAGATAC
GTACGAAAAAAGAGGCGTGCCTCACGAAGACGATAACATAATACTACACC
CTCCCTATCTGTGCTTGTGTACGGAAGAACTGTTGTGCTTGTCAAAACCT
GTGCAGGTTTTCGGATGTTGGTCTGAGAAATGTTATTTTTTTGCAAAACT
TGGCTTTCATGCTGCGTATACCCGCCAACACCAGGTGAGAATGCTCGAAC
AAGTGCAGCACGTGAGCGGCAACAAGGCCGTCGAGATCGCTGCGCATTAC
CCTCTCCCCCGCGACCTGGTGGCCGCCCTGTCGGACCCATCCGTGCCAGA
AGCGGATAGGGCCGGCCTGCTGCAGAGGAAGATGGGCAGCAGCTCGGAGC
AGAGGAAGTGCGCGCGGCGGGTGTTTGAACTCTTCACCCAGGAGGACGGA
GATTTCGTGATCGATTGAAACGGTTGGCAGCAGCTGGACTTGCGGCACTC
GCAGTGTGCCTCCGCCGCCGCCGCCGCTGCCGCTGCCGCCGCTCCTAAAA
AGCGGAAGGATAAAATCAATTTTTCGTGGTAATGGCTGCTTTGGGATACG
TTCTTGTTTGCCTTGTCTTTGCGACGAAACTACTGTAGGCGCCGCGCAAT
CACCTGTGCCGGGCGTCTGAAGCCTCGAAACAGCGTGTGTGTGCAGATAT
GTTCACGGTGAAGGCTACGGGGCATGGCGACCGCTCGACGTTCACAAACG
CGGAGCAACGTGTTACGTGCTGTAGTTTTTGTGTTGTCCACATGGGCGAC
CTTGTCTGTGGTTTCTTCGCCTGGTCCGCCCTAAACGCCTGACCTGGCCT
CGACTGTCTCTCCTTCCGTGCCGTTAACGCTTCGCTTGTTGATGCGGTCA
TGTGTTTGTAGGGTTGCACATCTCGGTGTCCACGTGTGTATGGTGAGACA
AATGCCTCTTAAATGTCAGTAACAAAGAAGTGCTTCCTGTGGAGGCTTCG
CGCTTTCGAAGGCCGTAGTAATGAGAATGTTTGATAACAAAAGCAGCTCC
TTCGTTTGGAGGCTTCGTGCTTTCGAAGGCCGTAGTATTGCCAACGTTTG
GAGTGCGAACCGTAGCCGGCAAGCCGTCCTCGTGTAGAACATGGTACGTG
GTGGTGAACTTCCGCGTGCCCCGAGTAAACCGACGCTCCGGGCTGATACT
TATCGAACGCTGGTAGCTTGTTTTTTGCGAGGGTAGGCCCTGTTATGTGT
GTGTGATTCTTGTTTTTTGTGCTTTGTTTAGCCATCACATGCGCATGTTC
AAGTGGTTTGCCAATCCGGTGTTTCTGGAGAGAGTGGTGATATGTACGAC
CGATTCGGCGTTGATACATGGGCGTTGTGCCTGTATTTTTACTTCGTGGC
TGTGGCAATCAAGCACACCCGCTCTCGTTCAA
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Coding sequence (CDS) from alignment at Scaffold_499:1267355..1269186-

>EsuBft1044_10a-0001 ID=EsuBft1044_10a-0001|Name=EsuBft1044_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=342bp|location=Sequence derived from alignment at Scaffold_499:1267355..1269186- (Ectocarpus subulatus male Bft15b)
ATGTCAAAGGATGATGTTACGGAGCTCCACTGCGTCGCTCGGAGCAAGAC
CGAGGCGAGAGGGTCCGAGCGGTTCCCCGAGAAGGAGAAGGAACTCATGG
ACACCTGGGTGAGAATGCTCGAACAAGTGCAGCACGTGAGCGGCAACAAG
GCCGTCGAGATCGCTGCGCATTACCCTCTCCCCCGCGACCTGGTGGCCGC
CCTGTCGGACCCATCCGTGCCAGAAGCGGATAGGGCCGGCCTGCTGCAGA
GGAAGATGGGCAGCAGCTCGGAGCAGAGGAAGTGCGCGCGGCGGGTGTTT
GAACTCTTCACCCAGGAGGACGGAGATTTCGTGATCGATTGA
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