EsuBft1043_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1043_8a-0001
Unique Name	EsuBft1043_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_11	contig	Scaffold_11:490639..495292 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1043_8
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Length	254
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-20_004520.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1043_8a	EsuBft1043_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_11 490639..495292 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1043_8a-0001	EsuBft1043_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_11 490707..493792 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1043_8a-0001-exon	EsuBft1043_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_11 490639..490751 +
EsuBft1043_8a-0001-exon	agat-exon-42568	Ectocarpus subulatus male Bft15b	exon	Scaffold_11 490945..491154 +
EsuBft1043_8a-0001-exon	agat-exon-42571	Ectocarpus subulatus male Bft15b	exon	Scaffold_11 491874..492095 +
EsuBft1043_8a-0001-exon	agat-exon-42569	Ectocarpus subulatus male Bft15b	exon	Scaffold_11 492842..492989 +
EsuBft1043_8a-0001-exon	agat-exon-42570	Ectocarpus subulatus male Bft15b	exon	Scaffold_11 493446..495292 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1043_8a-0001-exon	agat-five_prime_utr-266	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_11 490639..490706 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1043_8a-0001-cds	EsuBft1043_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_11 490707..490751 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1043_8a-0001-exon	agat-three_prime_utr-429	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_11 493793..495292 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_11:490639..495292+
coding sequence from alignment at Scaffold_11:490639..495292+

spliced messenger RNA

>EsuBft1043_8a-0001 ID=EsuBft1043_8a-0001|Name=EsuBft1043_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2540bp|location=Sequence derived from alignment at Scaffold_11:490639..495292+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGGGGACGGGGGGTCGGGCAGAAGGGTACGGTGCGGGCCTCCGCTGACG
CCGGCCCTGGAGGTGGCGATGAGGCTGCTGGCGGACGGGTACAAGTGCGC
TGTCACACGACAGACCGGTGTCTTGGAGGCAGAGGGAGACGAGCGTCTAT
CCCCGCCTTCGGATCTCACGCACTACCTCGTCTCGCTGGGCGAGTTGGTG
TTGACCTGGCTCTCCCTTTCTCCCGCGGAAGGGGTGGGACCCGCGCTGTC
CCGAAGGCTGCTGGCGAGCGGCTCGAGCTGGATGTTGTTGCGGACTTTCG
GCAGGGCCTTCCGGCCTGATTTGGCGCGAAGGGACATACCGCCAGGGAAT
GCAGAGCAAATCGAAGAGGGCCACAACGCTGGTGCTGCTTCAGCTGCCGC
CGCCACAAGTGCGGACGGGAGAAGGTTATCGGACGACCCTTCCTTGTCCT
ACCTCCACGCGGTCGTGGCCATGGTCGTCGGAAGCTTCGTGTCCTCGGGG
AGTAACCTAGCGAGTCGAGCGCTGGCGGCGGGCATCGAGAGATACGTTGG
CTTGTTTGAGTTTTGCAGGATCCTCGACTCTGCAAGCGATTGGATTGCGT
TCGCATGGCCAGCTACAGCTACACATACACCCACGCACCCTGGCGGTAGC
GTGGCGGGAGAGATGCGAGTCCCCTCGTTTTGGGCGTTGGCAGGCGACTC
CACCTTCTCCAGCAGGCTGGTAAAGATGATCCAGACCGCCCAGATGACGA
TGATCGACCTCATCATCAAGGGTGACTCTGAATCCGAGACCACCCGACGG
AATACCGCCGACCAGGGTGCAGAAGAGGGGGTCCCGCCATCATCTCATCG
TGAACAGGGGGGGGGCGCTAACACGGTCGACGGTGGTAGCCGGGGAGCGT
TTGAAGCACTGCTTCGGCGCCAGCAAGCTAGGATCGAGGAGCTCGAGCGC
CGCTTGCTTCCCCCCGGCGCCAATGCCGACCGTATCGATCCCGCCTTTGT
TGCCGCAGGCTGCGAGCAGCACCCTACGCTGACTATCTAGAGGCGCATCA
TGGGTGTCTAGTAGATGGATGGCCGCAGGCACGCACGACCGTCTCATGTT
GGGTATTTTCCGCACTGAAGAATGATTTCACGGTCACGGAAAACCCTCCA
GGGTCCTCATTTTTCGGGCGGGGCGATGAGTGTTGCTACGGGCTTAAACT
GCTCGAGTGGGATTGTCGTTGGCACGACATGATGAAGACATTTGGCTCTT
TTGACACTTGCGTGAAGTAGAACATGATACCAGCGTGTCCAATAGGCTGT
TCGCTCGCGTGACTTTTGAGGTGCAAAAGAGACTGCGGGTACGCATACGT
GTTTGTGCCGCACGCGCAGCAGCGCGCACTGGGTTAGACAACGGTTTCCT
CCCGCTTGTTACTGGAACCCTTCTGCGTAATTTGCTGACTGTAAATGTCG
ATGCTTGCTGGTATAGATCAGGTGGTGTTGCCTTTCCATCATCGTTTCGC
GCTGTTGCTGGAGTGTTTTAGACTGCTGTGTTCAGTGCTCTTGGCAGGAG
AAAGCCCAGAAATGGGATTGGTGCGCTATTTCTTGCTGTGTGGTTGCTGT
GCTGTGCTGCAGGGTGGGTCCGCCGTGTGTGGCGGAACAGGGGAACTCCC
GTCAGGTTCACGGGATTCTGCAGTCCAGCCCGACATACTTGGTATTTTGG
TGAGAAAATAAGAGCAATGCCTTCGCGGCGTTGTGCCTACCGTGATGGAT
AGGCTGGCGCAAGACGGACACCATGCGGTGTATTCCGTGACAACAGCCAT
CTCCCCGAAGAATCGTACTTCGGACGTTATAGTAGTTGTCAACAGCCTTC
CTGCGAGCGGCAGGGCGATTTGTTGTATTGCTTTAGTGTACTTCCCGCGG
TGTTGTTTTGACTGGGTGCTGTTTGGTTGATCGCTGTTACAATACCAAGC
GGTCCTGAAACTGTGTTTGACGTCCTTGAGTTCTCTCTTACAATTAATGT
TTTTTCGCCAGCTTCTTCAGACTACTGTAGGATAGACGTGCATATGCCTT
TGGAGAGAGGAGCTTGTGCACCTGATGAACCAATGAGAGATGCTTCGGCC
TACACGGTGTTTTCACTTGTGTCGGACTCGGGGGAGTCTCAGGTACAGCA
GTTTGGTACTTGTTCTGTGCAAGTATTTATGTTTCCTAGTGTGATCGACC
AGTAAACCACTGGCTGGCGGGGTTGTGTTTATGGCGCTTGTATCATTGAT
CTCTAGAAGTCAAGTAGACTATTTGTGTGTGTTCCCTGCGCTAAGAACCG
GCCTTTGACGAAAATCAACCCGTTCTTTTTCCCGTCTGGTGGAAGAAATA
GGCAACTGTTCTCCCGTGGGCGAGTGAAAGTACAGCAGTGTACGCACATT
ATACTAGAGTACAGTAGTCGTCTTGCTTGCTCCCTTCGAGTCGGACAGAT
GTTTTGAGCAACAAACGCGGGGAGTGCAAGCGCACAACATGATTTCCCAA
CCACCGCGATGGACGGGTTTAATTTCAAGTCTTGTTTAGT

protein sequence of EsuBft1043_8a-0001

>EsuBft1043_8 ID=EsuBft1043_8|Name=EsuBft1043_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=323bp
MRLLADGYKCAVTRQTGVLEAEGDERLSPPSDLTHYLVSLGELVLTWLSL
SPAEGVGPALSRRLLASGSSWMLLRTFGRAFRPDLARRDIPPGNAEQIEE
GHNAGAASAAAATSADGRRLSDDPSLSYLHAVVAMVVGSFVSSGSNLASR
ALAAGIERYVGLFEFCRILDSASDWIAFAWPATATHTPTHPGGSVAGEMR
VPSFWALAGDSTFSSRLVKMIQTAQMTMIDLIIKGDSESETTRRNTADQG
AEEGVPPSSHREQGGGANTVDGGSRGAFEALLRRQQARIEELERRLLPPG
ANADRIDPAFVAAGCEQHPTLTI

mRNA from alignment at Scaffold_11:490639..495292+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1043_8a-0001 ID=EsuBft1043_8a-0001|Name=EsuBft1043_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4654bp|location=Sequence derived from alignment at Scaffold_11:490639..495292+ (Ectocarpus subulatus male Bft15b)
GCGGGGACGGGGGGTCGGGCAGAAGGGTACGGTGCGGGCCTCCGCTGACG
CCGGCCCTGGAGGTGGCGATGAGGCTGCTGGCGGACGGGTACAAGTGCGC
TGTCACACGACAGGTCGGAGGACACATGCCTTGGGGGTGTCCCTGGGTCG
AAAAGTATGAACTGTATGCCACCGCCGATTGTCTTGCAGCAGAGCGTGCG
ACTGTAGAGCCGCAAACATGCGGGGAAAAACCAACCTACATTTCGTGCAA
CTGCTCGCCTCTGCCATCAACGATGCCCCCCCACCTCTCCGTCCCCTACC
GAACAGACCGGTGTCTTGGAGGCAGAGGGAGACGAGCGTCTATCCCCGCC
TTCGGATCTCACGCACTACCTCGTCTCGCTGGGCGAGTTGGTGTTGACCT
GGCTCTCCCTTTCTCCCGCGGAAGGGGTGGGACCCGCGCTGTCCCGAAGG
CTGCTGGCGAGCGGCTCGAGCTGGATGTTGTTGCGGACTTTCGGCAGGGC
CTTCCGGCCTGATTTGGTGAGTGCGGGACATGCACTCAAGCGTGTGCAGC
TCTGCCGGTGGCGGCTGCGATCGATCACTTCCTCCGCGCATCGTCCGGCT
TTTTGCCGGCTGTTTCAAGAAGTGTGTTGGGCGTCGCCGGGTGTCTTCTT
TTTGTCGCGCTTGAGGGTGGCTCAGCTGGCCACGCAGCCTTCCACGAGGC
TTTGCAGCCAGATTGATGCTGTCTTGCCGCTGGTGGCGGCTGTCTCGTTC
CCAAAAGCCGAGATAATTTTTTGGAGGGATGTCGGGCACCAGCGTGTATG
GGTATTCTGCGGAAGGGATTACGGAGTTTTGGGTCCTTCGGGTATATTTT
GAAACATGTTTATCTTGAAACGTTTTGATGTGTAGATTTTGTTTGGTCGG
AGCGTTGGAGGGTGTTCTCAAAATGTCAAGCCGGTGCTGTGTGGCTCTCG
ACTCTTGGCCCTTCGTTCAGAGCACAAAACACTATCGAGCCGCCAGGGAG
GAAGAGCCGGGGTGGCGAAGTCTCGCTTGACTTTGAATCCAACCCCTTTG
AAAGAGAATGTTCGGATGGCCCCCTCCCCTGGTCCGGTGAAAACCCGGCG
TGCTCCGTTTCGGCTTTGGAGGTGTGGGAAGTCAATGGTCTAACGAGTGC
GGCATGCACCCCCCCATCCCCGCCGTGGATCGCGCCTGTCACTTCACACT
TGAAAAATCCTGAATCCGAGACGCTTGTTTGTCAGGCGCGAAGGGACATA
CCGCCAGGGAATGCAGAGCAAATCGAAGAGGGCCACAACGCTGGTGCTGC
TTCAGCTGCCGCCGCCACAAGTGCGGACGGGAGAAGGTTATCGGACGACC
CTTCCTTGTCCTACCTCCACGCGGTCGTGGCCATGGTCGTCGGAAGCTTC
GTGTCCTCGGGGAGTAACCTAGCGAGTCGAGCGCTGGCGGCGGGCATCGA
GAGATACGTGAGTTGTTTTTACCATCGCAACAGCAAGGATCGCAAAGAAA
AACATGCACACGCCGGAGAACGTGGAGATCCGGTTATCGCTGCGTAACAG
GAGTCGTCCCCGTTTAAGGACACTTCCCTGCCGCTTAAATGACAGCCTTC
TTTTTCAGATATGTGGCCCCCGGCAGAACGTAAAAACGTAAAAACAGTAT
ATATCCTTTTTGGACACTTGCCCCTAGAAGGACACATTTTTCAAAGAAAA
ACCCTGAGTGTCCTCACAGTACGGTGGGGACGTCTGCTGTACTGTAGAAC
TTAAAAACACCAGCAGCGGCGTTCGTCAAATCATGGTATTCTTGTTGCAC
ACAAGATAACACACCCCCTTGACCAATTTTCGAAGCTCAATTTCTCAACT
GCAGGAACAGTCATCGCGCCGAAAACGGCGGCGTTGAAACCGTCTCGTCG
AGAGCTGGTCGAAAATTTATCGTTTCGTTCATGCATCCCCTTCGTCATGG
AGTAATCGAGCTTTGAAAATCGGTCCAGGAGGTGTGTTATCTTGTGTCAT
ATACGGTATTCTTGTTGCACACAAGATCTCTTGTGCTCGAGTGGACGGAA
ATCCAGACAATCCGACATCTCTTGTGTTCCGAACACTTTTGCTGAAACCC
CGGGCATTTTCCGATGCTAAATATTGACGACCGAGCTCGCGACGCGCCTT
TCTTTTCCTTGTTGCGGCGGACGTTTTTTTTTTCTTCTTTTTGTACGTGG
CAGGTTGGCTTGTTTGAGTTTTGCAGGATCCTCGACTCTGCAAGCGATTG
GATTGCGTTCGCATGGCCAGCTACAGCTACACATACACCCACGCACCCTG
GCGGTAGCGTGGCGGGAGAGATGCGAGTCCCCTCGTTTTGGGCGTTGGCA
GGTGCGGAGCGGGGCGTTGCTGCTTTTGCTTTCTTTTCCATGACTGGCCA
CGATTGGTATGAACGAGTCCGGATCCATCGTCGTCTGTGACACACTGCGT
TCTGGGGATGACTGACTGACGAGCGGAAAATATATCAACCTTTCGTTGTA
GCCGTGCGGTTTGGTTTCATGGGCGTTTCGACATCATGTCTTGCGTGTTG
TTCGTACCTTTGTCCAAAGTTGTCCAACTCCTCTGTTGGCTGGCGAAGTC
GGATGACCATCCCTTTGTACTTGGGGGCTAAATGGTGAACAAAAGCAAAC
CAAACCAAACGCGTCCATCCACAACCCCCCATTCACAGAGTTCGATTAAA
TTCGCTCGGGTTTCGTGGCTGCCCACGACCAATTCCATCTCTCTCCCTCC
CTCCCTCCCTCTCTTTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTC
CGAACAGGCGACTCCACCTTCTCCAGCAGGCTGGTAAAGATGATCCAGAC
CGCCCAGATGACGATGATCGACCTCATCATCAAGGGTGACTCTGAATCCG
AGACCACCCGACGGAATACCGCCGACCAGGGTGCAGAAGAGGGGGTCCCG
CCATCATCTCATCGTGAACAGGGGGGGGGCGCTAACACGGTCGACGGTGG
TAGCCGGGGAGCGTTTGAAGCACTGCTTCGGCGCCAGCAAGCTAGGATCG
AGGAGCTCGAGCGCCGCTTGCTTCCCCCCGGCGCCAATGCCGACCGTATC
GATCCCGCCTTTGTTGCCGCAGGCTGCGAGCAGCACCCTACGCTGACTAT
CTAGAGGCGCATCATGGGTGTCTAGTAGATGGATGGCCGCAGGCACGCAC
GACCGTCTCATGTTGGGTATTTTCCGCACTGAAGAATGATTTCACGGTCA
CGGAAAACCCTCCAGGGTCCTCATTTTTCGGGCGGGGCGATGAGTGTTGC
TACGGGCTTAAACTGCTCGAGTGGGATTGTCGTTGGCACGACATGATGAA
GACATTTGGCTCTTTTGACACTTGCGTGAAGTAGAACATGATACCAGCGT
GTCCAATAGGCTGTTCGCTCGCGTGACTTTTGAGGTGCAAAAGAGACTGC
GGGTACGCATACGTGTTTGTGCCGCACGCGCAGCAGCGCGCACTGGGTTA
GACAACGGTTTCCTCCCGCTTGTTACTGGAACCCTTCTGCGTAATTTGCT
GACTGTAAATGTCGATGCTTGCTGGTATAGATCAGGTGGTGTTGCCTTTC
CATCATCGTTTCGCGCTGTTGCTGGAGTGTTTTAGACTGCTGTGTTCAGT
GCTCTTGGCAGGAGAAAGCCCAGAAATGGGATTGGTGCGCTATTTCTTGC
TGTGTGGTTGCTGTGCTGTGCTGCAGGGTGGGTCCGCCGTGTGTGGCGGA
ACAGGGGAACTCCCGTCAGGTTCACGGGATTCTGCAGTCCAGCCCGACAT
ACTTGGTATTTTGGTGAGAAAATAAGAGCAATGCCTTCGCGGCGTTGTGC
CTACCGTGATGGATAGGCTGGCGCAAGACGGACACCATGCGGTGTATTCC
GTGACAACAGCCATCTCCCCGAAGAATCGTACTTCGGACGTTATAGTAGT
TGTCAACAGCCTTCCTGCGAGCGGCAGGGCGATTTGTTGTATTGCTTTAG
TGTACTTCCCGCGGTGTTGTTTTGACTGGGTGCTGTTTGGTTGATCGCTG
TTACAATACCAAGCGGTCCTGAAACTGTGTTTGACGTCCTTGAGTTCTCT
CTTACAATTAATGTTTTTTCGCCAGCTTCTTCAGACTACTGTAGGATAGA
CGTGCATATGCCTTTGGAGAGAGGAGCTTGTGCACCTGATGAACCAATGA
GAGATGCTTCGGCCTACACGGTGTTTTCACTTGTGTCGGACTCGGGGGAG
TCTCAGGTACAGCAGTTTGGTACTTGTTCTGTGCAAGTATTTATGTTTCC
TAGTGTGATCGACCAGTAAACCACTGGCTGGCGGGGTTGTGTTTATGGCG
CTTGTATCATTGATCTCTAGAAGTCAAGTAGACTATTTGTGTGTGTTCCC
TGCGCTAAGAACCGGCCTTTGACGAAAATCAACCCGTTCTTTTTCCCGTC
TGGTGGAAGAAATAGGCAACTGTTCTCCCGTGGGCGAGTGAAAGTACAGC
AGTGTACGCACATTATACTAGAGTACAGTAGTCGTCTTGCTTGCTCCCTT
CGAGTCGGACAGATGTTTTGAGCAACAAACGCGGGGAGTGCAAGCGCACA
ACATGATTTCCCAACCACCGCGATGGACGGGTTTAATTTCAAGTCTTGTT
TAGT

Coding sequence (CDS) from alignment at Scaffold_11:490639..495292+

>EsuBft1043_8a-0001 ID=EsuBft1043_8a-0001|Name=EsuBft1043_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=972bp|location=Sequence derived from alignment at Scaffold_11:490639..495292+ (Ectocarpus subulatus male Bft15b)
ATGAGGCTGCTGGCGGACGGGTACAAGTGCGCTGTCACACGACAGACCGG
TGTCTTGGAGGCAGAGGGAGACGAGCGTCTATCCCCGCCTTCGGATCTCA
CGCACTACCTCGTCTCGCTGGGCGAGTTGGTGTTGACCTGGCTCTCCCTT
TCTCCCGCGGAAGGGGTGGGACCCGCGCTGTCCCGAAGGCTGCTGGCGAG
CGGCTCGAGCTGGATGTTGTTGCGGACTTTCGGCAGGGCCTTCCGGCCTG
ATTTGGCGCGAAGGGACATACCGCCAGGGAATGCAGAGCAAATCGAAGAG
GGCCACAACGCTGGTGCTGCTTCAGCTGCCGCCGCCACAAGTGCGGACGG
GAGAAGGTTATCGGACGACCCTTCCTTGTCCTACCTCCACGCGGTCGTGG
CCATGGTCGTCGGAAGCTTCGTGTCCTCGGGGAGTAACCTAGCGAGTCGA
GCGCTGGCGGCGGGCATCGAGAGATACGTTGGCTTGTTTGAGTTTTGCAG
GATCCTCGACTCTGCAAGCGATTGGATTGCGTTCGCATGGCCAGCTACAG
CTACACATACACCCACGCACCCTGGCGGTAGCGTGGCGGGAGAGATGCGA
GTCCCCTCGTTTTGGGCGTTGGCAGGCGACTCCACCTTCTCCAGCAGGCT
GGTAAAGATGATCCAGACCGCCCAGATGACGATGATCGACCTCATCATCA
AGGGTGACTCTGAATCCGAGACCACCCGACGGAATACCGCCGACCAGGGT
GCAGAAGAGGGGGTCCCGCCATCATCTCATCGTGAACAGGGGGGGGGCGC
TAACACGGTCGACGGTGGTAGCCGGGGAGCGTTTGAAGCACTGCTTCGGC
GCCAGCAAGCTAGGATCGAGGAGCTCGAGCGCCGCTTGCTTCCCCCCGGC
GCCAATGCCGACCGTATCGATCCCGCCTTTGTTGCCGCAGGCTGCGAGCA
GCACCCTACGCTGACTATCTAG