EsuBft1043_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1043_4a-0001
Unique NameEsuBft1043_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_11contigScaffold_11:548481..553687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1043_4
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length267
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_004470.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_4aEsuBft1043_4aEctocarpus subulatus male Bft15bgeneScaffold_11 548481..553687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_4a-0001EsuBft1043_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_11 548741..551999 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_4a-0001-exonEsuBft1043_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_11 548481..548763 +
EsuBft1043_4a-0001-exonagat-exon-42531Ectocarpus subulatus male Bft15bexonScaffold_11 550056..550351 +
EsuBft1043_4a-0001-exonagat-exon-42532Ectocarpus subulatus male Bft15bexonScaffold_11 551075..551248 +
EsuBft1043_4a-0001-exonagat-exon-42533Ectocarpus subulatus male Bft15bexonScaffold_11 551767..553687 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_4a-0001-exonagat-five_prime_utr-263Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_11 548481..548740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_4a-0001-cdsEsuBft1043_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_11 548741..548763 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_4a-0001-exonagat-three_prime_utr-422Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_11 552000..553687 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1043_4a-0001 ID=EsuBft1043_4a-0001|Name=EsuBft1043_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2674bp|location=Sequence derived from alignment at Scaffold_11:548481..553687+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGCGCCCGCTGCTGCTGCGCAGCTGTGTATCGCTACCCCGTACACCAAA
CACTGCTGTAACCTCCTCCAACAGCGACTCTCCTTCAATCTGTTTGGAAA
GAGTCGAAAGAAGGAGGCAACAGGGCGTGCGTGAAGCAGCGGCTGGACGG
AGCCAGCGAGATCCTCATTTGATTGATTTCACCGCGGCGCGTCTTTTGAC
GAACAACAGCAGCAGATCCAGCGCTAGCACTACCACCCCACTACCAACAA
CACCACCAACATGGCCGCAAATGGAGACGGAGAGGTCGTGAAGGACGGCG
CGGTAGTTGAACGAGAGAAGACCGTTGAGTCTTCCGTCGCCAGCACAACG
TCAGCGGCGGTCGTGCCTGACGTAGCTGTTGTCGCCAAGGAGCCGGCAGA
AGCAAGAGAAGCGGAGGAGGTGGACGGGGAGAACGGTGCCGTTGCCGAGG
CGGCGGTAGTGGTCGCTGCAAGCCCTGAGGGGCACGGTGAAGAGGAAGAA
GAGGACGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGGGGATGA
AGATGAAGACGAGGATGAAGACGAAGACGGTGAGGAGGAAGACGAAGACG
AACAAGAAGAGGAAGAAGCCAGCGGCAGCGGAGGAGACAAGGGGAAGGGA
AAAGGGAAGGGGAACGGGGCGGCGGTGGCGGAGAAGGAGAGACGACCCAA
GAAAAAGGCGAAAAGAAGCTACGACGACGACCGCCTCGAAGCGGTTTCAA
AAGACGAACTCTCTGCGCTCAAGGGGAACGTCATCTACCCCCGTGCTCGC
CGTAAGGCCGCGATTGCCTCTCAGCGCCGCACGGCGTCAGAGATTGGCAA
GTTCGTGGGGGGCGCGGCAGACGACGACGATGATGACGATTCAGACGAGG
ATGGGGAGCTCGGAGGCAACTTGGGGGGCGCCTCCGCGGCGGTTGCGGAC
GGCGAGAGCGACGAGGAGGCAGAGCTCGAGTTCTGAACTGGATGATGGAC
AGGAGAGGGCCTTTCGCCCTTGTGCACGTTTGTGTCTACAGCAGTGGTCT
CTCGAACAGCAATCAGTGTAGTTTATGCATGGGTTTTTACGCCTGTAGGG
ATAATGAATGGTATTGGGCCGCTATATACTGGGGGAACTGAAGTTCTTAA
CAGGGTAGGAAGGAGTCGGTGGAATCCTTAGCGAAGGGGACCCCAACAGG
CGGGAGGGTTGGGTGGGGTGGGGTAGGGGGGTTGGTTGCGGCCTCACTTT
TGGTGCCGCAGTTTTGTTCGAGGCCAATCTTGGTGTGGCCACTCCGTGCG
TACAAATCTCGGGTGCTCGAGATCGATCGATGCTGTTGGTTGTGGCTTGT
GGCGGGGGAACAGTTGCTCAACGCCGACACCCCCGCCCAACCGAAGTTGC
CAACCGACCAATGAGCGGCGTGTACAGATTTGTTCGATTGGGGTGGGAGA
TATACATACATTGCGGCGATTTTGTTTGCATTGGAAAAGTCCGATGCGCT
GATGGGTGTGCTTTGCAGCCAGTGGTAGCCGATGCCGCTTATTTCCGTCT
TACCGAAATCGGTAGGCGGCTAGCTCGCAGGGCCTGCTTGGTGCGCATGA
ATCATCAATCATATTGACTTTGGCGGGGAGGGGCGGGGGGCGGAGGAGGT
TGGTCTCTGCAGCAGGTATTAACGCTCAACGCGAACGTATTTGTTCTTTG
TCGATTTGCTCTTTGTCGATTATCAGTTGTTTTGGCGGAAGGACCGTTGA
CACCGGTGTTCACGCACGTGACAGGCTGCACGGTCTATGCATACTGGAGG
CGAGTTGGGGTGTATCGGTTGGAAAATGTGTTCAGTGAAGAATGAAGTCT
TCTCGTTTAAGCTGGCGTGTTCCTATGTCGCCGAAAAACACATGCACTGC
TGTCTAATCTTGGCAACCTCCCACGCCTGCCACGCAATGCCTGCCCCACA
GTATACGGCATATCCACTACTACTATTGTGTTGTGTTGGCTAGAGCAAAA
GAAAGGTGTTCAGCGGGTCGACTTTTTGTAGGGTGATCGAGATCCGTTCG
GCAACGTGCTGCTGCTCATTTGAAGGCACTTTTTCTCTACCATGTTGGCA
TTTTTTGCGCCGATACACGGTGTTTCTTCTTTGTCCTCGCGAGCTGTTCT
CGCAGACTGAGTGACCATGTGACTGTCCGGCGGCATGTCGAATCGTGATG
TTCCGGCACAGCGTCTGTAAAAAGACATGTAACAGCAATGGTGACGAGAG
ATTTTGAAGGTCGTGCGGGATCCCGTTGGTTTGTTCATTGTAGCACCATT
TGGTTTTCAGTTCAACGGGCAAGAGTCGAACCCGATGCTGTCGCGCACTT
GTTTGCGGCATAGAGTTCTCTCTGACGCAGTTCGTTGCCGCGAGGCTACA
CAGGAGTATGCCTTTGCTTGACTGTTCGCACCGCAACGCCGGCTGACACC
CGCGAGCATGAACTGTCGTGTTTTAGAATACAAGTTCCCCCGCAGGAGAC
CTTCGTAGATGCTGAATGATATGTAAGCGTGGCGCTGGGCGACGGTAACG
GGGGTACTTCACCGAACAGACGCACCTTCGGCCAGCCACCCGCTTGGCCG
AAGCGGCTCGCTTCGGGTAGGTCCAAGAGAAGCGTTTTCATGTCTTTCGA
GCACCGGGGCTACATCGTTTGGTT
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protein sequence of EsuBft1043_4a-0001

>EsuBft1043_4 ID=EsuBft1043_4|Name=EsuBft1043_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=241bp
MAANGDGEVVKDGAVVEREKTVESSVASTTSAAVVPDVAVVAKEPAEARE
AEEVDGENGAVAEAAVVVAASPEGHGEEEEEDEEEEEEEEEEEEGDEDED
EDEDEDGEEEDEDEQEEEEASGSGGDKGKGKGKGNGAAVAEKERRPKKKA
KRSYDDDRLEAVSKDELSALKGNVIYPRARRKAAIASQRRTASEIGKFVG
GAADDDDDDDSDEDGELGGNLGGASAAVADGESDEEAELEF
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mRNA from alignment at Scaffold_11:548481..553687+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1043_4a-0001 ID=EsuBft1043_4a-0001|Name=EsuBft1043_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5207bp|location=Sequence derived from alignment at Scaffold_11:548481..553687+ (Ectocarpus subulatus male Bft15b)
TGGCGCCCGCTGCTGCTGCGCAGCTGTGTATCGCTACCCCGTACACCAAA CACTGCTGTAACCTCCTCCAACAGCGACTCTCCTTCAATCTGTTTGGAAA GAGTCGAAAGAAGGAGGCAACAGGGCGTGCGTGAAGCAGCGGCTGGACGG AGCCAGCGAGATCCTCATTTGATTGATTTCACCGCGGCGCGTCTTTTGAC GAACAACAGCAGCAGATCCAGCGCTAGCACTACCACCCCACTACCAACAA CACCACCAACATGGCCGCAAATGGAGACGGAGAGTAAGTGATGTTTCACC ACAGATGTTTGTAACACCATCACCTGTCGACAAACTACAAGTGATCTTGT CAGAGTAGCGACCTGATTTGTTAACCTCTTTTTTTTTCAAATTTGTTGAG CCTTGCAGAGCTGTGGTTCGAATCGACCCAGCAGCACCGACATGCAGGGG GCGAGTTGGGCGGTGGCGGGGGAGGGGTTACAGACTCCGGGCCGCTAGCT TTGATATTAAATTTGCGGGAGGTAAAGGAGGACCGACGAATAGAAATCGT GTCTACCGTGCGAGTGAGGGTAGCGTCGGGTCTGTGTGGCGAAGACAGGA GGGTCCAGTTCGGGCATGTGGAACATCCGCGCTTTGGTGGGGGCGGTGTG GACGGGATTTTGCTCATCGATACATACGCCAACGCTGAACCCCATCTTTC CTCTTGCAGGCACACAAGGCGGAGGGGATCACCAGGACATACGTATGCAT ATGCCCCAACATGGACCGGGATAAAGAACCCGACATAGACGTTCCGTGGC TTGCTTTTCTCGTTGTCGGCAATGGTGGTCTGTAGCTGTTTCAGACCGTT CACGTCTCCGATGCCACACGGTCACCACTGGTGTTTTCTTCCACACAGCA GCAGCAGGAGGAGGTTCTTGTGTAGGCGTGATAAGGCGTGCAAAGCGATT TCACCGGCATACGCATCTGCTTATCCGCAAGAAAGCTATGATTCTACGCA CGCAAGGGTTATGAGACACGAGACACCACAGCAGCCCATTGATGATGTTC GAGCGTTGAAGACAAGACCTAGGCTATTAGAGGGCGGTGTGGCGTCTTGT AACCCACCCCTCCGACAGAATGCGTTTTTGGGATCCACTGCAGTCTGGGG TATGTGACAACATGTGTACGTCATGTTTCCCCTGGCAAAGAGTTGTCGCC GCCTGCGTTGCGTAGGCTGATAACCAGGAGGTGTGATCCTACTTGCTACA AGAGACCCTGACGACAAAACTTCCCGCCTGAATGGTCTCATCTGTGCAGC TGACACCTCTGCGGCATGAAGAATCAAGTTCCAAACCCACCTCGCAACCA ACCCCCCTGGGTGGAAAAAACAACCCCCGCCAATGGTAGAAGAGCATCCA TGCTTTTCTAACGTACCGACCATGGCTACACCTAGGCACCTTGGGAACAC CTAGATGGTTGTCGAGTGACCCAACCAGCCATTCAGCACATGGAGGTTTT TCACTTTGATTGGCGTCTGCGCCATTCTTTTTCTTTCACCAGCTAAAGTG CGTGAATCTTTGCACCCCGAAACAGGGTCGTGAAGGACGGCGCGGTAGTT GAACGAGAGAAGACCGTTGAGTCTTCCGTCGCCAGCACAACGTCAGCGGC GGTCGTGCCTGACGTAGCTGTTGTCGCCAAGGAGCCGGCAGAAGCAAGAG AAGCGGAGGAGGTGGACGGGGAGAACGGTGCCGTTGCCGAGGCGGCGGTA GTGGTCGCTGCAAGCCCTGAGGGGCACGGTGAAGAGGAAGAAGAGGACGA GGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGGGGATGAAGATGAAG ACGAGGATGAAGACGAAGACGGTAGGGCTGACTCGTGCTTGCTTGCGCTC TTTTGAGCTGCCAAAGCCTGTGTTGATATTCTATGTATCATGCCGATGTA AGGCGGCTTGGATCACATCTCAGCGGCATGAGTGTGTGCCGTATTAGGTC GGGGGTGGTAAAGAAGGAACTACGGAAGGAACACGTCGTCAGTTGTCTCA AAACCAATGCGGGTAGCACTTGGGTGTGCCTGCCCACACGACCTTGTCTT TGGGCGTGCCAAGACCGGAAAACAATCAAGTCGTGCGAATCCGGCTGCCA CTTGTACAAGACAGAAGGCACCAACGTGCACAAGTCAACCTCCCTCTCAC AACGGGTTCTTGGATGAGGCTCACCCTTTGTGGCGCTTGCTCTACACCTC ACGGGCGTTTTTTTGGAGTGTGGGTGTAATGGTTCGCCTAGTCGGTCGCA ACCCAACGGGAGCCATCCTCGCTTCGTAGTATTGGGGTTCAAGGTGTAAT AGGTCTGGTGACTACGGGTATGCATGCTGGTGATCCCCCCACACACACAC ACACACACCGCCTTCCAGCTTCTATTCTCGTGTGTATGTGTTCCTCCCCG CCCCTTTCCGGGGACTTTTCAGCCCAGCGCAAGATTTTGTTCGTGTATCG TGGCCCAAAATCACGGCGCCCGCTTGGCCATCTGTTGGATTAATTCTGTC GCGTTTCTTGCTCCCTTCCCTCCTCCGTGTTCGTCCCATCGAAGGTGAGG AGGAAGACGAAGACGAACAAGAAGAGGAAGAAGCCAGCGGCAGCGGAGGA GACAAGGGGAAGGGAAAAGGGAAGGGGAACGGGGCGGCGGTGGCGGAGAA GGAGAGACGACCCAAGAAAAAGGCGAAAAGAAGCTACGACGACGACCGCC TCGAAGCGGTTTCAAAAGGTACAAAATTGGTTCGGGGAAAATGGAACAAC AACGACGACTGCGTGTGCCACTGCTCGTCTTGAGTTTCCTTCATGGAGAG CGTTGAATTTGCAATAGCCGCGAACCATTAGGGTGCGGAATCAGCTCCGT TCAGAAATATCTCTACTCCCGTGGTCCATTTTTTCCCACCAATCAACGTG GCGGGTTTGTGTATGCCCGATCGCCCAGACGGCACGAAACAACGTTCGTG CCGTGTGTACTGGGCTGCTTCATCTCGGCTGCTGGACGTGTGACGTGTTT CCGTCAGTCTGGCTATTGCTTGACACTCACTTCGTCACACGAAAATGGCA AGCAAACACGTGACCGCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCC CCGTCAACCCCCTACCTCTCTTGCCTGTCCGAACAGACGAACTCTCTGCG CTCAAGGGGAACGTCATCTACCCCCGTGCTCGCCGTAAGGCCGCGATTGC CTCTCAGCGCCGCACGGCGTCAGAGATTGGCAAGTTCGTGGGGGGCGCGG CAGACGACGACGATGATGACGATTCAGACGAGGATGGGGAGCTCGGAGGC AACTTGGGGGGCGCCTCCGCGGCGGTTGCGGACGGCGAGAGCGACGAGGA GGCAGAGCTCGAGTTCTGAACTGGATGATGGACAGGAGAGGGCCTTTCGC CCTTGTGCACGTTTGTGTCTACAGCAGTGGTCTCTCGAACAGCAATCAGT GTAGTTTATGCATGGGTTTTTACGCCTGTAGGGATAATGAATGGTATTGG GCCGCTATATACTGGGGGAACTGAAGTTCTTAACAGGGTAGGAAGGAGTC GGTGGAATCCTTAGCGAAGGGGACCCCAACAGGCGGGAGGGTTGGGTGGG GTGGGGTAGGGGGGTTGGTTGCGGCCTCACTTTTGGTGCCGCAGTTTTGT TCGAGGCCAATCTTGGTGTGGCCACTCCGTGCGTACAAATCTCGGGTGCT CGAGATCGATCGATGCTGTTGGTTGTGGCTTGTGGCGGGGGAACAGTTGC TCAACGCCGACACCCCCGCCCAACCGAAGTTGCCAACCGACCAATGAGCG GCGTGTACAGATTTGTTCGATTGGGGTGGGAGATATACATACATTGCGGC GATTTTGTTTGCATTGGAAAAGTCCGATGCGCTGATGGGTGTGCTTTGCA GCCAGTGGTAGCCGATGCCGCTTATTTCCGTCTTACCGAAATCGGTAGGC GGCTAGCTCGCAGGGCCTGCTTGGTGCGCATGAATCATCAATCATATTGA CTTTGGCGGGGAGGGGCGGGGGGCGGAGGAGGTTGGTCTCTGCAGCAGGT ATTAACGCTCAACGCGAACGTATTTGTTCTTTGTCGATTTGCTCTTTGTC GATTATCAGTTGTTTTGGCGGAAGGACCGTTGACACCGGTGTTCACGCAC GTGACAGGCTGCACGGTCTATGCATACTGGAGGCGAGTTGGGGTGTATCG GTTGGAAAATGTGTTCAGTGAAGAATGAAGTCTTCTCGTTTAAGCTGGCG TGTTCCTATGTCGCCGAAAAACACATGCACTGCTGTCTAATCTTGGCAAC CTCCCACGCCTGCCACGCAATGCCTGCCCCACAGTATACGGCATATCCAC TACTACTATTGTGTTGTGTTGGCTAGAGCAAAAGAAAGGTGTTCAGCGGG TCGACTTTTTGTAGGGTGATCGAGATCCGTTCGGCAACGTGCTGCTGCTC ATTTGAAGGCACTTTTTCTCTACCATGTTGGCATTTTTTGCGCCGATACA CGGTGTTTCTTCTTTGTCCTCGCGAGCTGTTCTCGCAGACTGAGTGACCA TGTGACTGTCCGGCGGCATGTCGAATCGTGATGTTCCGGCACAGCGTCTG TAAAAAGACATGTAACAGCAATGGTGACGAGAGATTTTGAAGGTCGTGCG GGATCCCGTTGGTTTGTTCATTGTAGCACCATTTGGTTTTCAGTTCAACG GGCAAGAGTCGAACCCGATGCTGTCGCGCACTTGTTTGCGGCATAGAGTT CTCTCTGACGCAGTTCGTTGCCGCGAGGCTACACAGGAGTATGCCTTTGC TTGACTGTTCGCACCGCAACGCCGGCTGACACCCGCGAGCATGAACTGTC GTGTTTTAGAATACAAGTTCCCCCGCAGGAGACCTTCGTAGATGCTGAAT GATATGTAAGCGTGGCGCTGGGCGACGGTAACGGGGGTACTTCACCGAAC AGACGCACCTTCGGCCAGCCACCCGCTTGGCCGAAGCGGCTCGCTTCGGG TAGGTCCAAGAGAAGCGTTTTCATGTCTTTCGAGCACCGGGGCTACATCG TTTGGTT
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Coding sequence (CDS) from alignment at Scaffold_11:548481..553687+

>EsuBft1043_4a-0001 ID=EsuBft1043_4a-0001|Name=EsuBft1043_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=726bp|location=Sequence derived from alignment at Scaffold_11:548481..553687+ (Ectocarpus subulatus male Bft15b)
ATGGCCGCAAATGGAGACGGAGAGGTCGTGAAGGACGGCGCGGTAGTTGA
ACGAGAGAAGACCGTTGAGTCTTCCGTCGCCAGCACAACGTCAGCGGCGG
TCGTGCCTGACGTAGCTGTTGTCGCCAAGGAGCCGGCAGAAGCAAGAGAA
GCGGAGGAGGTGGACGGGGAGAACGGTGCCGTTGCCGAGGCGGCGGTAGT
GGTCGCTGCAAGCCCTGAGGGGCACGGTGAAGAGGAAGAAGAGGACGAGG
AGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGGGGATGAAGATGAAGAC
GAGGATGAAGACGAAGACGGTGAGGAGGAAGACGAAGACGAACAAGAAGA
GGAAGAAGCCAGCGGCAGCGGAGGAGACAAGGGGAAGGGAAAAGGGAAGG
GGAACGGGGCGGCGGTGGCGGAGAAGGAGAGACGACCCAAGAAAAAGGCG
AAAAGAAGCTACGACGACGACCGCCTCGAAGCGGTTTCAAAAGACGAACT
CTCTGCGCTCAAGGGGAACGTCATCTACCCCCGTGCTCGCCGTAAGGCCG
CGATTGCCTCTCAGCGCCGCACGGCGTCAGAGATTGGCAAGTTCGTGGGG
GGCGCGGCAGACGACGACGATGATGACGATTCAGACGAGGATGGGGAGCT
CGGAGGCAACTTGGGGGGCGCCTCCGCGGCGGTTGCGGACGGCGAGAGCG
ACGAGGAGGCAGAGCTCGAGTTCTGA
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