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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft1043_4 |
Protein domains | Coil |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 4 |
Length | 267 |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-20_004470.1 |
Date last modified | 2016-06-13 |
Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1043_4a-0001 ID=EsuBft1043_4a-0001|Name=EsuBft1043_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2674bp|location=Sequence derived from alignment at Scaffold_11:548481..553687+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGGCGCCCGCTGCTGCTGCGCAGCTGTGTATCGCTACCCCGTACACCAAA CACTGCTGTAACCTCCTCCAACAGCGACTCTCCTTCAATCTGTTTGGAAA GAGTCGAAAGAAGGAGGCAACAGGGCGTGCGTGAAGCAGCGGCTGGACGG AGCCAGCGAGATCCTCATTTGATTGATTTCACCGCGGCGCGTCTTTTGAC GAACAACAGCAGCAGATCCAGCGCTAGCACTACCACCCCACTACCAACAA CACCACCAACATGGCCGCAAATGGAGACGGAGAGGTCGTGAAGGACGGCG CGGTAGTTGAACGAGAGAAGACCGTTGAGTCTTCCGTCGCCAGCACAACG TCAGCGGCGGTCGTGCCTGACGTAGCTGTTGTCGCCAAGGAGCCGGCAGA AGCAAGAGAAGCGGAGGAGGTGGACGGGGAGAACGGTGCCGTTGCCGAGG CGGCGGTAGTGGTCGCTGCAAGCCCTGAGGGGCACGGTGAAGAGGAAGAA GAGGACGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGGGGATGA AGATGAAGACGAGGATGAAGACGAAGACGGTGAGGAGGAAGACGAAGACG AACAAGAAGAGGAAGAAGCCAGCGGCAGCGGAGGAGACAAGGGGAAGGGA AAAGGGAAGGGGAACGGGGCGGCGGTGGCGGAGAAGGAGAGACGACCCAA GAAAAAGGCGAAAAGAAGCTACGACGACGACCGCCTCGAAGCGGTTTCAA AAGACGAACTCTCTGCGCTCAAGGGGAACGTCATCTACCCCCGTGCTCGC CGTAAGGCCGCGATTGCCTCTCAGCGCCGCACGGCGTCAGAGATTGGCAA GTTCGTGGGGGGCGCGGCAGACGACGACGATGATGACGATTCAGACGAGG ATGGGGAGCTCGGAGGCAACTTGGGGGGCGCCTCCGCGGCGGTTGCGGAC GGCGAGAGCGACGAGGAGGCAGAGCTCGAGTTCTGAACTGGATGATGGAC AGGAGAGGGCCTTTCGCCCTTGTGCACGTTTGTGTCTACAGCAGTGGTCT CTCGAACAGCAATCAGTGTAGTTTATGCATGGGTTTTTACGCCTGTAGGG ATAATGAATGGTATTGGGCCGCTATATACTGGGGGAACTGAAGTTCTTAA CAGGGTAGGAAGGAGTCGGTGGAATCCTTAGCGAAGGGGACCCCAACAGG CGGGAGGGTTGGGTGGGGTGGGGTAGGGGGGTTGGTTGCGGCCTCACTTT TGGTGCCGCAGTTTTGTTCGAGGCCAATCTTGGTGTGGCCACTCCGTGCG TACAAATCTCGGGTGCTCGAGATCGATCGATGCTGTTGGTTGTGGCTTGT GGCGGGGGAACAGTTGCTCAACGCCGACACCCCCGCCCAACCGAAGTTGC CAACCGACCAATGAGCGGCGTGTACAGATTTGTTCGATTGGGGTGGGAGA TATACATACATTGCGGCGATTTTGTTTGCATTGGAAAAGTCCGATGCGCT GATGGGTGTGCTTTGCAGCCAGTGGTAGCCGATGCCGCTTATTTCCGTCT TACCGAAATCGGTAGGCGGCTAGCTCGCAGGGCCTGCTTGGTGCGCATGA ATCATCAATCATATTGACTTTGGCGGGGAGGGGCGGGGGGCGGAGGAGGT TGGTCTCTGCAGCAGGTATTAACGCTCAACGCGAACGTATTTGTTCTTTG TCGATTTGCTCTTTGTCGATTATCAGTTGTTTTGGCGGAAGGACCGTTGA CACCGGTGTTCACGCACGTGACAGGCTGCACGGTCTATGCATACTGGAGG CGAGTTGGGGTGTATCGGTTGGAAAATGTGTTCAGTGAAGAATGAAGTCT TCTCGTTTAAGCTGGCGTGTTCCTATGTCGCCGAAAAACACATGCACTGC TGTCTAATCTTGGCAACCTCCCACGCCTGCCACGCAATGCCTGCCCCACA GTATACGGCATATCCACTACTACTATTGTGTTGTGTTGGCTAGAGCAAAA GAAAGGTGTTCAGCGGGTCGACTTTTTGTAGGGTGATCGAGATCCGTTCG GCAACGTGCTGCTGCTCATTTGAAGGCACTTTTTCTCTACCATGTTGGCA TTTTTTGCGCCGATACACGGTGTTTCTTCTTTGTCCTCGCGAGCTGTTCT CGCAGACTGAGTGACCATGTGACTGTCCGGCGGCATGTCGAATCGTGATG TTCCGGCACAGCGTCTGTAAAAAGACATGTAACAGCAATGGTGACGAGAG ATTTTGAAGGTCGTGCGGGATCCCGTTGGTTTGTTCATTGTAGCACCATT TGGTTTTCAGTTCAACGGGCAAGAGTCGAACCCGATGCTGTCGCGCACTT GTTTGCGGCATAGAGTTCTCTCTGACGCAGTTCGTTGCCGCGAGGCTACA CAGGAGTATGCCTTTGCTTGACTGTTCGCACCGCAACGCCGGCTGACACC CGCGAGCATGAACTGTCGTGTTTTAGAATACAAGTTCCCCCGCAGGAGAC CTTCGTAGATGCTGAATGATATGTAAGCGTGGCGCTGGGCGACGGTAACG GGGGTACTTCACCGAACAGACGCACCTTCGGCCAGCCACCCGCTTGGCCG AAGCGGCTCGCTTCGGGTAGGTCCAAGAGAAGCGTTTTCATGTCTTTCGA GCACCGGGGCTACATCGTTTGGTT back to topprotein sequence of EsuBft1043_4a-0001 >EsuBft1043_4 ID=EsuBft1043_4|Name=EsuBft1043_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=241bp
MAANGDGEVVKDGAVVEREKTVESSVASTTSAAVVPDVAVVAKEPAEARE AEEVDGENGAVAEAAVVVAASPEGHGEEEEEDEEEEEEEEEEEEGDEDED EDEDEDGEEEDEDEQEEEEASGSGGDKGKGKGKGNGAAVAEKERRPKKKA KRSYDDDRLEAVSKDELSALKGNVIYPRARRKAAIASQRRTASEIGKFVG GAADDDDDDDSDEDGELGGNLGGASAAVADGESDEEAELEF back to topmRNA from alignment at Scaffold_11:548481..553687+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1043_4a-0001 ID=EsuBft1043_4a-0001|Name=EsuBft1043_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5207bp|location=Sequence derived from alignment at Scaffold_11:548481..553687+ (Ectocarpus subulatus male Bft15b) TGGCGCCCGCTGCTGCTGCGCAGCTGTGTATCGCTACCCCGTACACCAAA
CACTGCTGTAACCTCCTCCAACAGCGACTCTCCTTCAATCTGTTTGGAAA
GAGTCGAAAGAAGGAGGCAACAGGGCGTGCGTGAAGCAGCGGCTGGACGG
AGCCAGCGAGATCCTCATTTGATTGATTTCACCGCGGCGCGTCTTTTGAC
GAACAACAGCAGCAGATCCAGCGCTAGCACTACCACCCCACTACCAACAA
CACCACCAACATGGCCGCAAATGGAGACGGAGAGTAAGTGATGTTTCACC
ACAGATGTTTGTAACACCATCACCTGTCGACAAACTACAAGTGATCTTGT
CAGAGTAGCGACCTGATTTGTTAACCTCTTTTTTTTTCAAATTTGTTGAG
CCTTGCAGAGCTGTGGTTCGAATCGACCCAGCAGCACCGACATGCAGGGG
GCGAGTTGGGCGGTGGCGGGGGAGGGGTTACAGACTCCGGGCCGCTAGCT
TTGATATTAAATTTGCGGGAGGTAAAGGAGGACCGACGAATAGAAATCGT
GTCTACCGTGCGAGTGAGGGTAGCGTCGGGTCTGTGTGGCGAAGACAGGA
GGGTCCAGTTCGGGCATGTGGAACATCCGCGCTTTGGTGGGGGCGGTGTG
GACGGGATTTTGCTCATCGATACATACGCCAACGCTGAACCCCATCTTTC
CTCTTGCAGGCACACAAGGCGGAGGGGATCACCAGGACATACGTATGCAT
ATGCCCCAACATGGACCGGGATAAAGAACCCGACATAGACGTTCCGTGGC
TTGCTTTTCTCGTTGTCGGCAATGGTGGTCTGTAGCTGTTTCAGACCGTT
CACGTCTCCGATGCCACACGGTCACCACTGGTGTTTTCTTCCACACAGCA
GCAGCAGGAGGAGGTTCTTGTGTAGGCGTGATAAGGCGTGCAAAGCGATT
TCACCGGCATACGCATCTGCTTATCCGCAAGAAAGCTATGATTCTACGCA
CGCAAGGGTTATGAGACACGAGACACCACAGCAGCCCATTGATGATGTTC
GAGCGTTGAAGACAAGACCTAGGCTATTAGAGGGCGGTGTGGCGTCTTGT
AACCCACCCCTCCGACAGAATGCGTTTTTGGGATCCACTGCAGTCTGGGG
TATGTGACAACATGTGTACGTCATGTTTCCCCTGGCAAAGAGTTGTCGCC
GCCTGCGTTGCGTAGGCTGATAACCAGGAGGTGTGATCCTACTTGCTACA
AGAGACCCTGACGACAAAACTTCCCGCCTGAATGGTCTCATCTGTGCAGC
TGACACCTCTGCGGCATGAAGAATCAAGTTCCAAACCCACCTCGCAACCA
ACCCCCCTGGGTGGAAAAAACAACCCCCGCCAATGGTAGAAGAGCATCCA
TGCTTTTCTAACGTACCGACCATGGCTACACCTAGGCACCTTGGGAACAC
CTAGATGGTTGTCGAGTGACCCAACCAGCCATTCAGCACATGGAGGTTTT
TCACTTTGATTGGCGTCTGCGCCATTCTTTTTCTTTCACCAGCTAAAGTG
CGTGAATCTTTGCACCCCGAAACAGGGTCGTGAAGGACGGCGCGGTAGTT
GAACGAGAGAAGACCGTTGAGTCTTCCGTCGCCAGCACAACGTCAGCGGC
GGTCGTGCCTGACGTAGCTGTTGTCGCCAAGGAGCCGGCAGAAGCAAGAG
AAGCGGAGGAGGTGGACGGGGAGAACGGTGCCGTTGCCGAGGCGGCGGTA
GTGGTCGCTGCAAGCCCTGAGGGGCACGGTGAAGAGGAAGAAGAGGACGA
GGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGGGGATGAAGATGAAG
ACGAGGATGAAGACGAAGACGGTAGGGCTGACTCGTGCTTGCTTGCGCTC
TTTTGAGCTGCCAAAGCCTGTGTTGATATTCTATGTATCATGCCGATGTA
AGGCGGCTTGGATCACATCTCAGCGGCATGAGTGTGTGCCGTATTAGGTC
GGGGGTGGTAAAGAAGGAACTACGGAAGGAACACGTCGTCAGTTGTCTCA
AAACCAATGCGGGTAGCACTTGGGTGTGCCTGCCCACACGACCTTGTCTT
TGGGCGTGCCAAGACCGGAAAACAATCAAGTCGTGCGAATCCGGCTGCCA
CTTGTACAAGACAGAAGGCACCAACGTGCACAAGTCAACCTCCCTCTCAC
AACGGGTTCTTGGATGAGGCTCACCCTTTGTGGCGCTTGCTCTACACCTC
ACGGGCGTTTTTTTGGAGTGTGGGTGTAATGGTTCGCCTAGTCGGTCGCA
ACCCAACGGGAGCCATCCTCGCTTCGTAGTATTGGGGTTCAAGGTGTAAT
AGGTCTGGTGACTACGGGTATGCATGCTGGTGATCCCCCCACACACACAC
ACACACACCGCCTTCCAGCTTCTATTCTCGTGTGTATGTGTTCCTCCCCG
CCCCTTTCCGGGGACTTTTCAGCCCAGCGCAAGATTTTGTTCGTGTATCG
TGGCCCAAAATCACGGCGCCCGCTTGGCCATCTGTTGGATTAATTCTGTC
GCGTTTCTTGCTCCCTTCCCTCCTCCGTGTTCGTCCCATCGAAGGTGAGG
AGGAAGACGAAGACGAACAAGAAGAGGAAGAAGCCAGCGGCAGCGGAGGA
GACAAGGGGAAGGGAAAAGGGAAGGGGAACGGGGCGGCGGTGGCGGAGAA
GGAGAGACGACCCAAGAAAAAGGCGAAAAGAAGCTACGACGACGACCGCC
TCGAAGCGGTTTCAAAAGGTACAAAATTGGTTCGGGGAAAATGGAACAAC
AACGACGACTGCGTGTGCCACTGCTCGTCTTGAGTTTCCTTCATGGAGAG
CGTTGAATTTGCAATAGCCGCGAACCATTAGGGTGCGGAATCAGCTCCGT
TCAGAAATATCTCTACTCCCGTGGTCCATTTTTTCCCACCAATCAACGTG
GCGGGTTTGTGTATGCCCGATCGCCCAGACGGCACGAAACAACGTTCGTG
CCGTGTGTACTGGGCTGCTTCATCTCGGCTGCTGGACGTGTGACGTGTTT
CCGTCAGTCTGGCTATTGCTTGACACTCACTTCGTCACACGAAAATGGCA
AGCAAACACGTGACCGCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCC
CCGTCAACCCCCTACCTCTCTTGCCTGTCCGAACAGACGAACTCTCTGCG
CTCAAGGGGAACGTCATCTACCCCCGTGCTCGCCGTAAGGCCGCGATTGC
CTCTCAGCGCCGCACGGCGTCAGAGATTGGCAAGTTCGTGGGGGGCGCGG
CAGACGACGACGATGATGACGATTCAGACGAGGATGGGGAGCTCGGAGGC
AACTTGGGGGGCGCCTCCGCGGCGGTTGCGGACGGCGAGAGCGACGAGGA
GGCAGAGCTCGAGTTCTGAACTGGATGATGGACAGGAGAGGGCCTTTCGC
CCTTGTGCACGTTTGTGTCTACAGCAGTGGTCTCTCGAACAGCAATCAGT
GTAGTTTATGCATGGGTTTTTACGCCTGTAGGGATAATGAATGGTATTGG
GCCGCTATATACTGGGGGAACTGAAGTTCTTAACAGGGTAGGAAGGAGTC
GGTGGAATCCTTAGCGAAGGGGACCCCAACAGGCGGGAGGGTTGGGTGGG
GTGGGGTAGGGGGGTTGGTTGCGGCCTCACTTTTGGTGCCGCAGTTTTGT
TCGAGGCCAATCTTGGTGTGGCCACTCCGTGCGTACAAATCTCGGGTGCT
CGAGATCGATCGATGCTGTTGGTTGTGGCTTGTGGCGGGGGAACAGTTGC
TCAACGCCGACACCCCCGCCCAACCGAAGTTGCCAACCGACCAATGAGCG
GCGTGTACAGATTTGTTCGATTGGGGTGGGAGATATACATACATTGCGGC
GATTTTGTTTGCATTGGAAAAGTCCGATGCGCTGATGGGTGTGCTTTGCA
GCCAGTGGTAGCCGATGCCGCTTATTTCCGTCTTACCGAAATCGGTAGGC
GGCTAGCTCGCAGGGCCTGCTTGGTGCGCATGAATCATCAATCATATTGA
CTTTGGCGGGGAGGGGCGGGGGGCGGAGGAGGTTGGTCTCTGCAGCAGGT
ATTAACGCTCAACGCGAACGTATTTGTTCTTTGTCGATTTGCTCTTTGTC
GATTATCAGTTGTTTTGGCGGAAGGACCGTTGACACCGGTGTTCACGCAC
GTGACAGGCTGCACGGTCTATGCATACTGGAGGCGAGTTGGGGTGTATCG
GTTGGAAAATGTGTTCAGTGAAGAATGAAGTCTTCTCGTTTAAGCTGGCG
TGTTCCTATGTCGCCGAAAAACACATGCACTGCTGTCTAATCTTGGCAAC
CTCCCACGCCTGCCACGCAATGCCTGCCCCACAGTATACGGCATATCCAC
TACTACTATTGTGTTGTGTTGGCTAGAGCAAAAGAAAGGTGTTCAGCGGG
TCGACTTTTTGTAGGGTGATCGAGATCCGTTCGGCAACGTGCTGCTGCTC
ATTTGAAGGCACTTTTTCTCTACCATGTTGGCATTTTTTGCGCCGATACA
CGGTGTTTCTTCTTTGTCCTCGCGAGCTGTTCTCGCAGACTGAGTGACCA
TGTGACTGTCCGGCGGCATGTCGAATCGTGATGTTCCGGCACAGCGTCTG
TAAAAAGACATGTAACAGCAATGGTGACGAGAGATTTTGAAGGTCGTGCG
GGATCCCGTTGGTTTGTTCATTGTAGCACCATTTGGTTTTCAGTTCAACG
GGCAAGAGTCGAACCCGATGCTGTCGCGCACTTGTTTGCGGCATAGAGTT
CTCTCTGACGCAGTTCGTTGCCGCGAGGCTACACAGGAGTATGCCTTTGC
TTGACTGTTCGCACCGCAACGCCGGCTGACACCCGCGAGCATGAACTGTC
GTGTTTTAGAATACAAGTTCCCCCGCAGGAGACCTTCGTAGATGCTGAAT
GATATGTAAGCGTGGCGCTGGGCGACGGTAACGGGGGTACTTCACCGAAC
AGACGCACCTTCGGCCAGCCACCCGCTTGGCCGAAGCGGCTCGCTTCGGG
TAGGTCCAAGAGAAGCGTTTTCATGTCTTTCGAGCACCGGGGCTACATCG
TTTGGTT back to topCoding sequence (CDS) from alignment at Scaffold_11:548481..553687+ >EsuBft1043_4a-0001 ID=EsuBft1043_4a-0001|Name=EsuBft1043_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=726bp|location=Sequence derived from alignment at Scaffold_11:548481..553687+ (Ectocarpus subulatus male Bft15b) ATGGCCGCAAATGGAGACGGAGAGGTCGTGAAGGACGGCGCGGTAGTTGA ACGAGAGAAGACCGTTGAGTCTTCCGTCGCCAGCACAACGTCAGCGGCGG TCGTGCCTGACGTAGCTGTTGTCGCCAAGGAGCCGGCAGAAGCAAGAGAA GCGGAGGAGGTGGACGGGGAGAACGGTGCCGTTGCCGAGGCGGCGGTAGT GGTCGCTGCAAGCCCTGAGGGGCACGGTGAAGAGGAAGAAGAGGACGAGG AGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGGGGATGAAGATGAAGAC GAGGATGAAGACGAAGACGGTGAGGAGGAAGACGAAGACGAACAAGAAGA GGAAGAAGCCAGCGGCAGCGGAGGAGACAAGGGGAAGGGAAAAGGGAAGG GGAACGGGGCGGCGGTGGCGGAGAAGGAGAGACGACCCAAGAAAAAGGCG AAAAGAAGCTACGACGACGACCGCCTCGAAGCGGTTTCAAAAGACGAACT CTCTGCGCTCAAGGGGAACGTCATCTACCCCCGTGCTCGCCGTAAGGCCG CGATTGCCTCTCAGCGCCGCACGGCGTCAGAGATTGGCAAGTTCGTGGGG GGCGCGGCAGACGACGACGATGATGACGATTCAGACGAGGATGGGGAGCT CGGAGGCAACTTGGGGGGCGCCTCCGCGGCGGTTGCGGACGGCGAGAGCG ACGAGGAGGCAGAGCTCGAGTTCTGA back to top
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