EsuBft1043_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1043_11a-0001
Unique NameEsuBft1043_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_11contigScaffold_11:469490..471761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13349.G1XMM6
ProteomeIdEsuBft1043_11
Protein domainsIPR002889
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl4751|Fungi
Length198
Hectar predicted targeting categoryother localisation
Evalue1.98e-09
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota,39RW7@33154|Opisthokonta,3NW6X@4751|Fungi,3QQIF@4890|Ascomycota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionWsc domain-containing protein
COG categoryGO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_11aEsuBft1043_11aEctocarpus subulatus male Bft15bgeneScaffold_11 469490..471761 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_11a-0001-exonEsuBft1043_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_11 469490..471308 -
EsuBft1043_11a-0001-exonagat-exon-42589Ectocarpus subulatus male Bft15bexonScaffold_11 471594..471761 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_11a-0001-exonagat-three_prime_utr-419Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_11 469490..471224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_11a-0001-cdsEsuBft1043_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_11 471225..471308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_11a-0001EsuBft1043_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_11 471225..471761 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1043_11a-0001 ID=EsuBft1043_11a-0001|Name=EsuBft1043_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1987bp|location=Sequence derived from alignment at Scaffold_11:469490..471761- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGACTCCCCTCTCGTCTCTCCCCGGATGGCTGTCTCAGGCGTGCGA
CAAGCACTGCGGCGAGATGGACTACCCGTTCTTCGCTCTCAAGTATGGAT
TCATATGTTCGTGCGGAAACAGTGTGCCAGACGAGAGCCGCCGGGCGGAC
GACAGCCTATGTTCTACGCCGTGTAGGAGCCCCGACACGAACAGCAAATG
CGGCGGAGATTTGCACCAGGCAATCTTTTGGGTGTCCGAAAGGGGCCAAT
GAGAGTACTACGAGAGCGAGTGGACAAAAAAGGAGACCGAATGCTACATG
AACTGCTGTCTCGCACCCCAACAACGGGCCTAGGGCAGCTCGACACGGAG
GAAGAACGGTCGGGGCAGACGTTCGATCGACTTCTGCGCGTGATCTCAAA
GGACCACCTTCTTCCCCGGTGTGTGTGGCTGAGCTCAATGCCGGCTGGTA
ACCAGCTGTTCATTTTTCACCGCTTACCCTGAGGGGGCCTCGCACATCTT
ATCTTCGTTTCTTTTCTCGCAGACGGTGTCTCGGGTAGATATCAGTCCGT
GGCCGTCCCCCAAACATTTAGCATTGGTTGGGTACAATACATTTAGATAA
GCACTGTTTCACGGCGTGGTGGTCGGGAAAACACACACACACGTCGACAG
AGATACATCGGTCGGTCGGCAGGGAGCAAATACCTCCAACAACACACCTG
GCCTAGAAAACGTGAATACCTGGTGCACGTTTAGATCAGGTCGCAACGCT
GCTTCTTTCTGAATATAATCAGTCCCACAACGAAAAGTGGCATAGACAGC
GGTGATGCGAAGCCGTGGAGAAGAAATGAGGCCAGAGGCGGCACAAGCAG
GCGCCCCAGCGATATCCCGTAGCAAAAAACGGCGCAGGTTGGAGGTTCCT
CGGGCAGTGCATTCGAGTCGGTTTGTGTGTGTGATGCCTCGGGAAAATAC
TTTTCGAGTTCGTCCGGTGTGTGTGTGGTCATCTCTCCCTGTCTGTTCGT
GTACCATGCGATAGCGGGACGAGGTGTCGTGACCCTTCTTGAGGTCGGTT
GGCCCTTGGCAGACACTAGAAAGTTTTTCTCCACCTCTCTCTCCTCCTGC
GGTGTTTGCCCTCGATTTTGAACGCGAAACGGGTGGTACTACAATAAATA
TCGCGTCGTCAATAAATAACGAGACCCCGGCACAGATTAATTTCGTTTTG
CCGTTGGTCGCTCCTTTCGTGACTCTGCAACGTGTTCACATCATACTGTC
AATACCCGGTGTATCGTATTTCAGTGCCATTCTCGATATTGTCTGGTTAC
GTTGTACATGTACTGTAGTTTGGTGGCATTCTCGCTTTGTCTGCATATAT
CTTGTACTTCGAGTATGGTATTTCTGTGCCATTCACGCTTATACCAATTG
TCATGTATGTGCATATCATGCTGTATCAACATGTTTCGCGACGTCGAGAC
TCACGCAAAAATGAATGTGGGAGGGAGGGGGGATGGACGATGGCTGTGCT
ACACTTATGCGCTCATCATAGGACAGTCTAGCAGCCCGGTTACCAGCCCT
AGGCACGTAGAAATGTTGCTTGTTTCTAGCCCTCCTTTGCTTTAACCCCG
TGAAAGGAATGCAGGAAGGAGAGGGCTTGCGCGATTGAAGTCATGATGTT
TTTGTTGGGGGGGTGACTTCGTTTTTTCCCGGGAAGGGAGGGGGGCGGTT
TTCGTGGACACGCCGACACAACATAATTTTGTCTTCAGGGCGTGAAATGC
TTTCGTCTTCAGGGTGCTAAAAGCTTGTGTCTTACAGGTTTTCAGTGCTC
GTCGTCTTCAGGACGTTAAACGCGTAAAGTACGCTACCATGGGGGGGTCC
TTCGCGTTCGCAAGGGCGCAGAGCATTATATTTTGTAGCTGTTGTTCAGG
CTCGACGGCCGCCGGTAGCTATGTACAGCCCTTCGAACTAGATTAATGTT
GCTTTTGCCATAAGTTGAAGCGCATCAACGGGAAGGA
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protein sequence of EsuBft1043_11a-0001

>EsuBft1043_11 ID=EsuBft1043_11|Name=EsuBft1043_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=83bp
MLTPLSSLPGWLSQACDKHCGEMDYPFFALKYGFICSCGNSVPDESRRAD
DSLCSTPCRSPDTNSKCGGDLHQAIFWVSERGQ
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mRNA from alignment at Scaffold_11:469490..471761-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1043_11a-0001 ID=EsuBft1043_11a-0001|Name=EsuBft1043_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2272bp|location=Sequence derived from alignment at Scaffold_11:469490..471761- (Ectocarpus subulatus male Bft15b)
ATGCTGACTCCCCTCTCGTCTCTCCCCGGATGGCTGTCTCAGGCGTGCGA
CAAGCACTGCGGCGAGATGGACTACCCGTTCTTCGCTCTCAAGTATGGAT
TCATATGTTCGTGCGGAAACAGTGTGCCAGACGAGAGCCGCCGGGCGGAC
GACAGCCTATGTTCTACGGTTAGAAGTCTCATCGCGTAGTCTTGAGACTC
TTGTTTGTTCTTCGTTCCTCTTTTCTTTCCGATACTTGTACCTTGCGGCC
GCCCCATGTTTTCGCTTTTGATACACAGATCCATTCTCAACATAACATGT
CATTCTTTGTTGTGACACTCCGTGAGACTCTGTCGCTCACGTATGGATGC
AGAAGGCACCACGTGGGAAGTGAGCGTACGCGTTTAGTCAGGTTGCATTT
ACCTCCGAACGTGCTTCCGTCCTGTTTAAACGACCCATTTTTTTCCCCCA
CAGCCGTGTAGGAGCCCCGACACGAACAGCAAATGCGGCGGAGATTTGCA
CCAGGCAATCTTTTGGGTGTCCGAAAGGGGCCAATGAGAGTACTACGAGA
GCGAGTGGACAAAAAAGGAGACCGAATGCTACATGAACTGCTGTCTCGCA
CCCCAACAACGGGCCTAGGGCAGCTCGACACGGAGGAAGAACGGTCGGGG
CAGACGTTCGATCGACTTCTGCGCGTGATCTCAAAGGACCACCTTCTTCC
CCGGTGTGTGTGGCTGAGCTCAATGCCGGCTGGTAACCAGCTGTTCATTT
TTCACCGCTTACCCTGAGGGGGCCTCGCACATCTTATCTTCGTTTCTTTT
CTCGCAGACGGTGTCTCGGGTAGATATCAGTCCGTGGCCGTCCCCCAAAC
ATTTAGCATTGGTTGGGTACAATACATTTAGATAAGCACTGTTTCACGGC
GTGGTGGTCGGGAAAACACACACACACGTCGACAGAGATACATCGGTCGG
TCGGCAGGGAGCAAATACCTCCAACAACACACCTGGCCTAGAAAACGTGA
ATACCTGGTGCACGTTTAGATCAGGTCGCAACGCTGCTTCTTTCTGAATA
TAATCAGTCCCACAACGAAAAGTGGCATAGACAGCGGTGATGCGAAGCCG
TGGAGAAGAAATGAGGCCAGAGGCGGCACAAGCAGGCGCCCCAGCGATAT
CCCGTAGCAAAAAACGGCGCAGGTTGGAGGTTCCTCGGGCAGTGCATTCG
AGTCGGTTTGTGTGTGTGATGCCTCGGGAAAATACTTTTCGAGTTCGTCC
GGTGTGTGTGTGGTCATCTCTCCCTGTCTGTTCGTGTACCATGCGATAGC
GGGACGAGGTGTCGTGACCCTTCTTGAGGTCGGTTGGCCCTTGGCAGACA
CTAGAAAGTTTTTCTCCACCTCTCTCTCCTCCTGCGGTGTTTGCCCTCGA
TTTTGAACGCGAAACGGGTGGTACTACAATAAATATCGCGTCGTCAATAA
ATAACGAGACCCCGGCACAGATTAATTTCGTTTTGCCGTTGGTCGCTCCT
TTCGTGACTCTGCAACGTGTTCACATCATACTGTCAATACCCGGTGTATC
GTATTTCAGTGCCATTCTCGATATTGTCTGGTTACGTTGTACATGTACTG
TAGTTTGGTGGCATTCTCGCTTTGTCTGCATATATCTTGTACTTCGAGTA
TGGTATTTCTGTGCCATTCACGCTTATACCAATTGTCATGTATGTGCATA
TCATGCTGTATCAACATGTTTCGCGACGTCGAGACTCACGCAAAAATGAA
TGTGGGAGGGAGGGGGGATGGACGATGGCTGTGCTACACTTATGCGCTCA
TCATAGGACAGTCTAGCAGCCCGGTTACCAGCCCTAGGCACGTAGAAATG
TTGCTTGTTTCTAGCCCTCCTTTGCTTTAACCCCGTGAAAGGAATGCAGG
AAGGAGAGGGCTTGCGCGATTGAAGTCATGATGTTTTTGTTGGGGGGGTG
ACTTCGTTTTTTCCCGGGAAGGGAGGGGGGCGGTTTTCGTGGACACGCCG
ACACAACATAATTTTGTCTTCAGGGCGTGAAATGCTTTCGTCTTCAGGGT
GCTAAAAGCTTGTGTCTTACAGGTTTTCAGTGCTCGTCGTCTTCAGGACG
TTAAACGCGTAAAGTACGCTACCATGGGGGGGTCCTTCGCGTTCGCAAGG
GCGCAGAGCATTATATTTTGTAGCTGTTGTTCAGGCTCGACGGCCGCCGG
TAGCTATGTACAGCCCTTCGAACTAGATTAATGTTGCTTTTGCCATAAGT
TGAAGCGCATCAACGGGAAGGA
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Coding sequence (CDS) from alignment at Scaffold_11:469490..471761-

>EsuBft1043_11a-0001 ID=EsuBft1043_11a-0001|Name=EsuBft1043_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=252bp|location=Sequence derived from alignment at Scaffold_11:469490..471761- (Ectocarpus subulatus male Bft15b)
ATGCTGACTCCCCTCTCGTCTCTCCCCGGATGGCTGTCTCAGGCGTGCGA
CAAGCACTGCGGCGAGATGGACTACCCGTTCTTCGCTCTCAAGTATGGAT
TCATATGTTCGTGCGGAAACAGTGTGCCAGACGAGAGCCGCCGGGCGGAC
GACAGCCTATGTTCTACGCCGTGTAGGAGCCCCGACACGAACAGCAAATG
CGGCGGAGATTTGCACCAGGCAATCTTTTGGGTGTCCGAAAGGGGCCAAT
GA
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