EsuBft1042_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1042_4a-0001
Unique Name	EsuBft1042_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_419	contig	Scaffold_419:99650..102768 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LQE2
ProteomeId	EsuBft1042_4
Protein domains	IPR020683
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	232
Hectar predicted targeting category	other localisation
Evalue	5e-35
EggNOG OGs	COG0666@1\|root,KOG0504@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	ANKRD9
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Description	protein ubiquitination
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_4a	EsuBft1042_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_419 99650..102768 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_4a-0001-exon	agat-exon-30224	Ectocarpus subulatus male Bft15b	exon	Scaffold_419 99650..100139 -
EsuBft1042_4a-0001-exon	EsuBft1042_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_419 100938..102768 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_4a-0001-exon	agat-three_prime_utr-416	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_419 99650..100139 -
EsuBft1042_4a-0001-exon	agat-three_prime_utr-417	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_419 100938..102429 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_4a-0001-cds	EsuBft1042_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_419 102430..102768 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_4a-0001	EsuBft1042_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_419 102430..102768 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_419:99650..102768-
coding sequence from alignment at Scaffold_419:99650..102768-

spliced messenger RNA

>EsuBft1042_4a-0001 ID=EsuBft1042_4a-0001|Name=EsuBft1042_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2321bp|location=Sequence derived from alignment at Scaffold_419:99650..102768- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCGAGGTGGAGATTTCAAGCTCGTCCAAAGGGAGGCGACTTGGG
AGCAGTGGAAGCAGTGGCTTCGAGTACCTCTGTTGCATGCCGCGGCCAAG
AAGGCAACATGGATCTCTTCAGGCGGCTTATGGACGCTGGTGCCGACGGG
GAAGCAGGCTGGCGGGGTTGCGATGGACGAACTCTGCTGGGTGCGGCCGC
ATGCGGCAACAATATTGACAAGGTGGTACGGGCTCTGCTCACCGCGGGGG
CGAAGAGTATTGTAAACGTCCGGTTCGGGTCTACGCCCGAGTCCGCTCTC
CACGTTGCGGCAGCGCGGGGTGCTGAAGACCTATGCTAGGCGCTCATGAT
CGCCCGAACAGACCCGAATGTACGTGATTCCGAGGAATTCAGTCCGCTTC
ACCTCGCTGCCGAAGCTGGGCACCACCATGTTATAGAGAGCCTTCCTCTG
AAAGGGGCCGATGTACACGCCGAGACGGGTGCCGGAAAGACTCCGCTCCA
CCTGACTGCTTCCAAGGGTCATACGCTGTGCATCTCTGGGCGCTGCAGAC
AAGGACGTGTTCGATGAGTATGGTGAAACGCCACTGCTGTTCAAGGCGGC
GGTAAACAACCACCTCGGAGTTGTTGAGAAGCTTCTAGCTGCTGGTGCCA
ACCACGGCATCCGTGCCGGCAACCAACATTCTCCACTCGAGATTGCTGCA
AACAGCGGTCACGCGACCATCGTGAAGGCCTTCCCTGACAAGACAGAAGT
GCAGTCCACGCCACCGATGATTGCGGCTTCACACGCTACACTACCGGTTG
CCCCGGTGGTCTAGTGGGTAGCCTCGCAGCCTGCTAAGGGCCAGGTCATG
GGTTCGAGTCCCGACAGAGTGAGTTTTTTCTCGCTTATTAAATCCTGGTC
TCCGTTCGAAGCGACACGCTGCAAAGCTCGTTGTTAGTAAACTTGATCGA
CTTCATTAGTCGAGAGGGGAGGGATTGCTGTACCCTTGTCGCGAAAAAAA
TATCTCAGGCAGGAACCGCAGGAGGGGGTCCAACCCCCCCCTCCTATGTG
ACCCCGGTTGGGTCGTCTAGCTAGTAGAAGTGGAGGATAGGGGCCAGAGG
GGCAGACGACAGAGTCCAATGATGGGAGAAAAACAACAACAATAACAACG
ATGCTGCAACTGATGACAGATCTGTCAGTGACGAGCAATGTTGTACGTGT
ACTGTTGGAGGCTGGGGCTGATGTTCAACGCGACGAACACCGGACACGGC
AATTGCGACACGCCTCTCCATGGTCGCCGTAGATCGGATGGCATCGATCG
GCACGATCCACGCTCTGTTGGAGGGAGGGGCCAACGTCAATGTGCGTGAC
GATTTCGACCAGACACCATTGCATGTAGCTTGCGTGAGGTCAAATGTGGT
GGCTGTGGATACTCTGCTGCGTCGGAGAGCAGATGAGAAGTTAACGGACG
ACGATGGATCAACCCCTGCAGACGTGATAAAAGCTCCGGAAGAGGACGGC
AATAACGACGAAGAAATCGAGGCCAACCAGCGCATGCGCCAAATGCTGGC
ACGCGCTCCAGCCGATAGGTCATGGCGTCGCCGCGGGCGGCTGGTGGTAA
GCCGTTCCTGCCCGACCAGGGTGCAGATCGCAAACGGCAGCAGCAGCGGC
AGCTGGATCGGCAGCAGCAAGGGTTGCTCCGTCAAGGTGGCGAGGGTCAG
CGTCGAGGAATCGGGTGGGGGTGATGAGAAGACGGAATACGACACGGTGG
TCGACTGGAGGGATTTGGTGGGCAGGATAGTCGGACTGGAGGCTGATCGC
TTGATCCGCTTGGTGACGGGCTTCCTTTGAGGTTTCAAGGACATGAAGAA
ACGGGAGCGGGGTCCCGTTCTCGAGCCTACCTTGCGTATGATGCTTCGGG
CCAGGTGGTGGCGACTGAACCGTTTCGATGATGCAGATGCCGGCTGGAAA
GTTGATACACAGTAGATGTGACAGGGCCGAACCCTGGGGCTAATTTGATT
GTCGCTTGAGAATGGGGTTGTGTCCGAGAGGCCTTCCTCTCTGTTTTTGC
CCCGATCATTGTTTCGTTACCACTCCCACGTGGCCCCTCGAACACTCAAC
TGATTTGCTCGTTGGGTTCCTTTTTCCGCCTTGTTTTCGGTTGGTTCCTG
CTTGTTTTCTGTCTCCTCGATTCCGTTGCGTCTGTGGACTGTGGACGTTC
AATTTCATGCCTTCTCTACAGTAGGTACGTGGTGTGTAAGAACAAGAACT
GTGAGGACTTCGATAGTCAGGCCTTGATGCGTTGTTGCTGCCGACAGGAC
GCGAGCCGGGCATTAGCAACG

protein sequence of EsuBft1042_4a-0001

>EsuBft1042_4 ID=EsuBft1042_4|Name=EsuBft1042_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=112bp
MASRWRFQARPKGGDLGAVEAVASSTSVACRGQEGNMDLFRRLMDAGADG
EAGWRGCDGRTLLGAAACGNNIDKVVRALLTAGAKSIVNVRFGSTPESAL
HVAAARGAEDLC

mRNA from alignment at Scaffold_419:99650..102768-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1042_4a-0001 ID=EsuBft1042_4a-0001|Name=EsuBft1042_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3119bp|location=Sequence derived from alignment at Scaffold_419:99650..102768- (Ectocarpus subulatus male Bft15b)
ATGGCTTCGAGGTGGAGATTTCAAGCTCGTCCAAAGGGAGGCGACTTGGG
AGCAGTGGAAGCAGTGGCTTCGAGTACCTCTGTTGCATGCCGCGGCCAAG
AAGGCAACATGGATCTCTTCAGGCGGCTTATGGACGCTGGTGCCGACGGG
GAAGCAGGCTGGCGGGGTTGCGATGGACGAACTCTGCTGGGTGCGGCCGC
ATGCGGCAACAATATTGACAAGGTGGTACGGGCTCTGCTCACCGCGGGGG
CGAAGAGTATTGTAAACGTCCGGTTCGGGTCTACGCCCGAGTCCGCTCTC
CACGTTGCGGCAGCGCGGGGTGCTGAAGACCTATGCTAGGCGCTCATGAT
CGCCCGAACAGACCCGAATGTACGTGATTCCGAGGAATTCAGTCCGCTTC
ACCTCGCTGCCGAAGCTGGGCACCACCATGTTATAGAGAGCCTTCCTCTG
AAAGGGGCCGATGTACACGCCGAGACGGGTGCCGGAAAGACTCCGCTCCA
CCTGACTGCTTCCAAGGGTCATACGCTGTGCATCTCTGGGCGCTGCAGAC
AAGGACGTGTTCGATGAGTATGGTGAAACGCCACTGCTGTTCAAGGCGGC
GGTAAACAACCACCTCGGAGTTGTTGAGAAGCTTCTAGCTGCTGGTGCCA
ACCACGGCATCCGTGCCGGCAACCAACATTCTCCACTCGAGATTGCTGCA
AACAGCGGTCACGCGACCATCGTGAAGGCCTTCCCTGACAAGACAGAAGT
GCAGTCCACGCCACCGATGATTGCGGCTTCACACGCTACACTACCGGTTG
CCCCGGTGGTCTAGTGGGTAGCCTCGCAGCCTGCTAAGGGCCAGGTCATG
GGTTCGAGTCCCGACAGAGTGAGTTTTTTCTCGCTTATTAAATCCTGGTC
TCCGTTCGAAGCGACACGCTGCAAAGCTCGTTGTTAGTAAACTTGATCGA
CTTCATTAGTCGAGAGGGGAGGGATTGCTGTACCCTTGTCGCGAAAAAAA
TATCTCAGGCAGGAACCGCAGGAGGGGGTCCAACCCCCCCCTCCTATGTG
ACCCCGGTTGGGTCGTCTAGCTAGTAGAAGTGGAGGATAGGGGCCAGAGG
GGCAGACGACAGAGTCCAATGATGGGAGAAAAACAACAACAATAACAACG
ATGCTGCAACTGATGACAGATCTGTCAGTGACGAGCAATGTTGTACGTGT
ACTGTTGGAGGCTGGGGCTGATGTTCAACGCGACGAACACCGGACACGGC
AATTGCGACACGCCTCTCCATGGTCGCCGTAGATCGGATGGCATCGATCG
GCACGATCCACGCTCTGTTGGAGGGAGGGGCCAACGTCAATGTGCGTGAC
GATTTCGACCAGACACCATTGCATGTAGCTTGCGTGAGGTCAAATGTGGT
GGCTGTGGATACTCTGCTGCGTCGGAGAGCAGATGAGAAGTTAACGGACG
ACGATGGATCAACCCCTGCAGACGTGATAAAAGCTCCGGAAGAGGACGGC
AATAACGACGAAGAAATCGAGGCCAACCAGCGCATGCGCCAAATGCTGGC
ACGCGCTCCAGCCGATAGGTCATGGCGTCGCCGCGGGCGGCTGGTGGTAA
GCCGTTCCTGCCCGACCAGGGTGCAGATCGCAAACGGCAGCAGCAGCGGC
AGCTGGATCGGCAGCAGCAAGGGTTGCTCCGTCAAGGTGGCGAGGGTCAG
CGTCGAGGAATCGGGTGGGGGTGATGAGAAGACGGAATACGACACGGTGG
TCGACTGGAGGGATTTGGTGGGCAGGATAGTCGGACTGGAGGCTGATCGC
TTGATCCGCTTGGTGACGGGCTTCCTTTGAGGTACGTGTTTTGCTGTGGG
GTTGATGGATGTTTCGTTGCCATCGCAGTGAAGAATTACCGTAATGTCGT
GAATACTGCCGTGCACAAACTCGGGACTTGCGGCAGGTGTTTTTCTGGAT
TGCGTTGTATCGCCACCTCCGTGGTCTTGACATCCAAAGGGGGTTGATCG
AATCGGCCCCGTGTAGTTTCGCTGCAGATATGATGTATCCCCTGTTCATG
GTTTCGCGCAGCGCATGGGTAAAATATGAACGAATGTCATTCGTCGGAAA
CAATCGTACTACCATGGGGTGCGAAACGACCGAGGTTTTTGAGCTGTGCC
GACCGAACAAGGAATGTCTGTTTGTCTGTTGCCAGCAATCGCTGTTCGTC
TGTCGGAGCGAGAGCTAACTATGTACTGCTGCACCCGTCTCTTGCTCACG
ATTACGGGCTGTGATATTCTTGTGGCGGTTGTTCTACAGCGTGTAGGGAG
TCATTGTTGTGGTGCTGTAGCTGGAGATGTCACTCGGAAGTGTAGTGGAT
GCCTCCAATCGACTTCCCACACGAGCTTCTTGTCCTGTGCGCACCACTGG
TGGTGTCATTCATGGCTTTTCGGTGTAGCGATGTTTCCGGATTGCAACAC
TCACGCGCTCTCGTTTGTTGTGCCATTCCCGGGCCTTGCTGCTTGCAAGA
GCATGTGCTGTAGTCCCTCTGTTTCTCTTGCATACTTGCGCAGACGGACT
GATCCCACATAGTGCTGTCGATAGGTGTGCCTCTGACCACGCTTCTGTTT
CACCCGACGACTTACGTGCTGCATGTCAGGTTTCAAGGACATGAAGAAAC
GGGAGCGGGGTCCCGTTCTCGAGCCTACCTTGCGTATGATGCTTCGGGCC
AGGTGGTGGCGACTGAACCGTTTCGATGATGCAGATGCCGGCTGGAAAGT
TGATACACAGTAGATGTGACAGGGCCGAACCCTGGGGCTAATTTGATTGT
CGCTTGAGAATGGGGTTGTGTCCGAGAGGCCTTCCTCTCTGTTTTTGCCC
CGATCATTGTTTCGTTACCACTCCCACGTGGCCCCTCGAACACTCAACTG
ATTTGCTCGTTGGGTTCCTTTTTCCGCCTTGTTTTCGGTTGGTTCCTGCT
TGTTTTCTGTCTCCTCGATTCCGTTGCGTCTGTGGACTGTGGACGTTCAA
TTTCATGCCTTCTCTACAGTAGGTACGTGGTGTGTAAGAACAAGAACTGT
GAGGACTTCGATAGTCAGGCCTTGATGCGTTGTTGCTGCCGACAGGACGC
GAGCCGGGCATTAGCAACG

Coding sequence (CDS) from alignment at Scaffold_419:99650..102768-

>EsuBft1042_4a-0001 ID=EsuBft1042_4a-0001|Name=EsuBft1042_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=339bp|location=Sequence derived from alignment at Scaffold_419:99650..102768- (Ectocarpus subulatus male Bft15b)
ATGGCTTCGAGGTGGAGATTTCAAGCTCGTCCAAAGGGAGGCGACTTGGG
AGCAGTGGAAGCAGTGGCTTCGAGTACCTCTGTTGCATGCCGCGGCCAAG
AAGGCAACATGGATCTCTTCAGGCGGCTTATGGACGCTGGTGCCGACGGG
GAAGCAGGCTGGCGGGGTTGCGATGGACGAACTCTGCTGGGTGCGGCCGC
ATGCGGCAACAATATTGACAAGGTGGTACGGGCTCTGCTCACCGCGGGGG
CGAAGAGTATTGTAAACGTCCGGTTCGGGTCTACGCCCGAGTCCGCTCTC
CACGTTGCGGCAGCGCGGGGTGCTGAAGACCTATGCTAG