EsuBft1042_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1042_2a-0001
Unique Name	EsuBft1042_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_419	contig	Scaffold_419:120326..124128 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1042_2
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	287
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_2a	EsuBft1042_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_419 120326..124128 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_2a-0001	EsuBft1042_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_419 123581..123796 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_2a-0001-exon	agat-exon-30208	Ectocarpus subulatus male Bft15b	exon	Scaffold_419 120326..120947 -
EsuBft1042_2a-0001-exon	EsuBft1042_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_419 121872..124128 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_2a-0001-exon	agat-three_prime_utr-413	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_419 120326..120947 -
EsuBft1042_2a-0001-exon	agat-three_prime_utr-414	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_419 121872..123580 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_2a-0001-cds	EsuBft1042_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_419 123581..123796 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1042_2a-0001-exon	agat-five_prime_utr-259	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_419 123797..124128 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_419:120326..124128-
coding sequence from alignment at Scaffold_419:120326..124128-

spliced messenger RNA

>EsuBft1042_2a-0001 ID=EsuBft1042_2a-0001|Name=EsuBft1042_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2879bp|location=Sequence derived from alignment at Scaffold_419:120326..124128- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATCCTGTTTCACCCCAAACATCGCCGACTCAAGCCTCGTTCTCCACACG
GCAATCGAGTCCGCTTGGTCGGAGGGTCGAATTACATACAGAGGACACCA
CTTTCGAGGTCATCAGACCTAATCTCGTTCTAGGACGGCCGTCCCGACTT
GGGCCTGGCCGTGGCTTGTGGCAGCCTCATGCAGGTAGACCGCACAATCG
AAATCCGAGGGGAAGAGAGGGTAGTGAGACAGCAGCGGAAGAAGCACAGC
CGCGGGATACTGCTAATCAGCCAGCTGTTGAGAAAGGGTACCACCGAGGC
AGCTGGAAAACCCGTGCAATCTGTGGTTGCTGATGAAGTTGAGCTCCTCG
AAAAGGGTAGAGAGCATGTTGAAGGCATCCGAGAGAGAGCATCGAAACGC
GGGAAACGACAGCCTGCTGCTTGCTGCTGCTGCTGCTTCATCTGCTGCGG
CGAAGAAGGCGAAGCGCAAGGGGGCGGACGCAGCTCTCTCCGACCCTCTA
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NNNNNGGGGCGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCA
ACCCCGATGGTGAACACCGGGGGGGGTTTTGTCCCGGGGGGGGGACAGAA
AGTTCGTGTCCCCTGATTTGCATTTCCCCATACATTGATTAAGATAAATC
ACCAAGTTTCGCTGAAAACCCACCTTCCCGACCCCGGATTAAAAATCTGA
GACCGGATATGGCATCTACACACCGAGAGCAACCCACAGTTGAATTTTCA
GAGCTTAGGTGGTGTGGCAACATTGTCAATCTCAACCCCTCCCCAGCATA
TACCGGAAGGCGCCCCCTGCGATACACCTTGGCCGACCGCCGCTCAAGCG
GGCGCAGGCAAGCGTGGAGAACGGTCGATGTTTCGGGAGCATGTGTACAC
ATGAGCATTTGATGCAGCGTTGTATCGCTGTGCGCCTCGTTCCCAGGGAG
GAGATAGTCTAGATGCCTATCACTACGAAGAGACCCGCACACTCCTCCGG
CTGTGCACCCTGTTGACCTGCTTGTGTTTCAGAGTGTGTTTATGGAGCAT
GAGATTTTCGACTGCGTTCGAGGTTTGAGAGTGTTCATGGAGCGTCAGAT
GACCGGCGGTGTTCAAGGGGCAAACTTGCACCATCAACGGAATGTAGACA
GCAGTGACTGGGTCAAAGTTGGGGTGCACTCGCTGTCTGTGTGATGGGGA
CCTTTCCTGTGTAGTCCGGAGGCGTGGCCCTGTTTTTTGTTGATGTGCTT
TGTCATGCTGCCAATCTTCGCCCTTTCTCTACTCCAATGACATGTCTTAC
CGCGCGTCTTCCATTGTGGCTGGCGTGTCGTCCCTTGCGCCGCCGCTTGG
AATGGGGAATAGGGGAAGATGGAAAGAGGAGACACCGTTAAATATGGTTG
AGCCCGCGTCTGCGACCGGATCCGGTCGAATGGGTGTGGCATGATGTGAA
AGGTCGACAGGCAGCGAAATGAAAATTCA

protein sequence of EsuBft1042_2a-0001

>EsuBft1042_2 ID=EsuBft1042_2|Name=EsuBft1042_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=72bp
MKLSSSKRVESMLKASEREHRNAGNDSLLLAAAAASSAAAKKAKRKGADA
ALSDPLAXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_419:120326..124128-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1042_2a-0001 ID=EsuBft1042_2a-0001|Name=EsuBft1042_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3803bp|location=Sequence derived from alignment at Scaffold_419:120326..124128- (Ectocarpus subulatus male Bft15b)
CATCCTGTTTCACCCCAAACATCGCCGACTCAAGCCTCGTTCTCCACACG
GCAATCGAGTCCGCTTGGTCGGAGGGTCGAATTACATACAGAGGACACCA
CTTTCGAGGTCATCAGACCTAATCTCGTTCTAGGACGGCCGTCCCGACTT
GGGCCTGGCCGTGGCTTGTGGCAGCCTCATGCAGGTAGACCGCACAATCG
AAATCCGAGGGGAAGAGAGGGTAGTGAGACAGCAGCGGAAGAAGCACAGC
CGCGGGATACTGCTAATCAGCCAGCTGTTGAGAAAGGGTACCACCGAGGC
AGCTGGAAAACCCGTGCAATCTGTGGTTGCTGATGAAGTTGAGCTCCTCG
AAAAGGGTAGAGAGCATGTTGAAGGCATCCGAGAGAGAGCATCGAAACGC
GGGAAACGACAGCCTGCTGCTTGCTGCTGCTGCTGCTTCATCTGCTGCGG
CGAAGAAGGCGAAGCGCAAGGGGGCGGACGCAGCTCTCTCCGACCCTCTA
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NNNNNGGGGCGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCA
ACCCCGATGGTGAACACCGGGGGGGGTTTTGTCCCGGGGGGGGGACAGAA
AGTTCGTGTCCCCTGATTTGCATTTCCCCATACATTGATTAAGATAAATC
ACCAAGTTTCGCTGAAAACCCACCTTCCCGACCCCGGATTAAAAATCTGA
GACCGGATATGGCATCTACACACCGAGAGCAACCCACAGTTGAATTTTCA
GAGCTTAGGTGGTGTGGCAACATTGTCAATCTCAACCCCTCCCCAGCATA
TACCGGAAGGCGCCCCCTGCGATACACCTTGGCCGACCGCCGCTCAAGCG
GGCGCAGGTAAGCCCCTACACTGGCGTTTGCATGCTCTAGTACCTGGCAG
ACATGTTGCGGTTGCTTTAGCGTGGCAGCACCGTGCCCTCTATGTAACAA
TAAACCGAAATCCGCACGTCGGAAACACAGAGCCTTGTTGATATGTTTCG
TGTTCGGCGGTGTGGTTGCCCTGCTGTGTGTAGACATTCGAGAGAGACTA
TCTCTCGCCTCTCATACATGTCCCAATCTACACGCACATACACACAGCGC
GTTGCTCGTGGATAGACGGACAGGCAGCAGCAGTAGGGATGAAAGAGCGC
CGGAAGGGTCACGATATGGATGGCGAGAGAGCAGTACGGGGAGCAACAAA
AAATTGTAGACTACATCCATCCAACAGCGGTAGGTCATGTGGTTTAGACT
ATATTGTCTAGATATTGTTTGTATTAGGTGGGGTGGAAAGGAGCATTTAC
CTTTTTCGGTGACTCTGTTTGTGTACTTCAATCCAATAGTCTATATCTCG
AACAGGGTACATACGGCTAGGTAGAACGGCAGGAGCGTAGTGCACGAGAG
CAACTCAACGCATGCCTTCACTTGTACAAGAATACCGTGGGCTGCACTGG
ATACCCCCTGGACTGATTTTCAGAGCTCGATTACTCCACGCCGGAGGCAT
ACGATACGTGTTCGGAAAGCTCTTGACGGGACGGTTCCAACTCCGACATT
TTCGGCACCGTCACTGATTTTCCTGCCGAGTAAATCAAGCCTTAAAAACC
GTTCCAGGGGGTGTGATACCTAATGCAACCTACGGTAGGAACGGAAGGGG
TTGCGTTGGAGTGTTGCTTGAGCCCACCCGTACTACAAAACCATCACCGT
ACGGACATAACGGGGTGAGGGTGCTACGGGGCTTCGCCCTCACTGTTGCT
CCCCATGATATACCCATCGGTTAAACTGCAGGCAAGCGTGGAGAACGGTC
GATGTTTCGGGAGCATGTGTACACATGAGCATTTGATGCAGCGTTGTATC
GCTGTGCGCCTCGTTCCCAGGGAGGAGATAGTCTAGATGCCTATCACTAC
GAAGAGACCCGCACACTCCTCCGGCTGTGCACCCTGTTGACCTGCTTGTG
TTTCAGAGTGTGTTTATGGAGCATGAGATTTTCGACTGCGTTCGAGGTTT
GAGAGTGTTCATGGAGCGTCAGATGACCGGCGGTGTTCAAGGGGCAAACT
TGCACCATCAACGGAATGTAGACAGCAGTGACTGGGTCAAAGTTGGGGTG
CACTCGCTGTCTGTGTGATGGGGACCTTTCCTGTGTAGTCCGGAGGCGTG
GCCCTGTTTTTTGTTGATGTGCTTTGTCATGCTGCCAATCTTCGCCCTTT
CTCTACTCCAATGACATGTCTTACCGCGCGTCTTCCATTGTGGCTGGCGT
GTCGTCCCTTGCGCCGCCGCTTGGAATGGGGAATAGGGGAAGATGGAAAG
AGGAGACACCGTTAAATATGGTTGAGCCCGCGTCTGCGACCGGATCCGGT
CGAATGGGTGTGGCATGATGTGAAAGGTCGACAGGCAGCGAAATGAAAAT
TCA

Coding sequence (CDS) from alignment at Scaffold_419:120326..124128-

>EsuBft1042_2a-0001 ID=EsuBft1042_2a-0001|Name=EsuBft1042_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=216bp|location=Sequence derived from alignment at Scaffold_419:120326..124128- (Ectocarpus subulatus male Bft15b)
ATGAAGTTGAGCTCCTCGAAAAGGGTAGAGAGCATGTTGAAGGCATCCGA
GAGAGAGCATCGAAACGCGGGAAACGACAGCCTGCTGCTTGCTGCTGCTG
CTGCTTCATCTGCTGCGGCGAAGAAGGCGAAGCGCAAGGGGGCGGACGCA
GCTCTCTCCGACCCTCTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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