EsuBft1041_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1041_8a-0001
Unique Name	EsuBft1041_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_170	contig	Scaffold_170:273140..274023 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1041_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	88
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1041_8a	EsuBft1041_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_170 273140..274023 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1041_8a-0001-exon	EsuBft1041_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_170 273140..274023 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1041_8a-0001-exon	agat-five_prime_utr-258	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_170 273140..273282 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1041_8a-0001-cds	EsuBft1041_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_170 273283..274023 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1041_8a-0001	EsuBft1041_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_170 273283..274023 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_170:273140..274023+
coding sequence from alignment at Scaffold_170:273140..274023+

spliced messenger RNA

>EsuBft1041_8a-0001 ID=EsuBft1041_8a-0001|Name=EsuBft1041_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=884bp|location=Sequence derived from alignment at Scaffold_170:273140..274023+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGCTGCAGCCAAGAGGTATTTCGGAGGAGATCTATTTCTTCGGAGGAG
ATCTATTTGGCGCGGGCTTCTGGGGGCATTCACATATCGGTTGGAACGGG
AGGTTTGGATCTTGGCGGCTCTCGGTTGCATCAAATTTGGGCCATGTCAT
CCGAGCACAAGTCGCCGGAGACGGAAGAGCGCCTTGGTGTCGTCCGCAGT
GAAGGATCTACTGGCGGTCAGGTCGAGTCGGCATTGGGGACGGGAGGGGG
TTCGTTTCCTCCGTCTCAGGTTGTGGCGGGCGCTATTGCGGCGGCCGCGA
GGGCTGCTGCCGGTGGCGTGGATTCACCAGCAGGTGACGTGGCTTCAACA
ACGCAATCATCCGCAGATGTTGGTGTTGCTGAGAGCAGTGGGTTTCCGAC
TCAAAGTCATGCTCGGGCCTTGGCTTCCAGCGGGGACCGCCAGCCGGAGC
TCGGGCGTGCGGATGACCAAGTCCAGGCCCACGTCATGTCTCGTTTGGCC
CATATGTCGGTGGGTGCTGCGGCGGGGGGGGAGCCCAGCAAGGGCACCAC
GCTCGCGTCTGAGAATGCGGAAAACATCGCTCGTCTGGAACAGGGCCAGA
CGAACATTGTGGCCCAGCTTACCGAGATCGCTGGGTTGCTGAAGAACTTC
CGGCCGGAGTCGGGGCAGGATGGGAGTCGTGGGCCCGGGGGCTCGGGAGG
CCTCGGTCTGGTGCCGGCGTCGTCGCCGTGGGGCGGGGGCGCGGGCGGGG
GGGCGAGTGTGCCCGCGAGGTCCAACGCCAAAGAGGAGGCGAGGAGGGAG
GCCACCATTTGGCAGGCCAAATATAATCAGACACTCTGGGTACTTCGGGG
GCAGCGGGGGCCGGAGCCCGGGCCACAGAANNNN

protein sequence of EsuBft1041_8a-0001

>EsuBft1041_8 ID=EsuBft1041_8|Name=EsuBft1041_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=247bp
MSSEHKSPETEERLGVVRSEGSTGGQVESALGTGGGSFPPSQVVAGAIAA
AARAAAGGVDSPAGDVASTTQSSADVGVAESSGFPTQSHARALASSGDRQ
PELGRADDQVQAHVMSRLAHMSVGAAAGGEPSKGTTLASENAENIARLEQ
GQTNIVAQLTEIAGLLKNFRPESGQDGSRGPGGSGGLGLVPASSPWGGGA
GGGASVPARSNAKEEARREATIWQAKYNQTLWVLRGQRGPEPGPQXX

mRNA from alignment at Scaffold_170:273140..274023+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1041_8a-0001 ID=EsuBft1041_8a-0001|Name=EsuBft1041_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=884bp|location=Sequence derived from alignment at Scaffold_170:273140..274023+ (Ectocarpus subulatus male Bft15b)
GCTGCTGCAGCCAAGAGGTATTTCGGAGGAGATCTATTTCTTCGGAGGAG
ATCTATTTGGCGCGGGCTTCTGGGGGCATTCACATATCGGTTGGAACGGG
AGGTTTGGATCTTGGCGGCTCTCGGTTGCATCAAATTTGGGCCATGTCAT
CCGAGCACAAGTCGCCGGAGACGGAAGAGCGCCTTGGTGTCGTCCGCAGT
GAAGGATCTACTGGCGGTCAGGTCGAGTCGGCATTGGGGACGGGAGGGGG
TTCGTTTCCTCCGTCTCAGGTTGTGGCGGGCGCTATTGCGGCGGCCGCGA
GGGCTGCTGCCGGTGGCGTGGATTCACCAGCAGGTGACGTGGCTTCAACA
ACGCAATCATCCGCAGATGTTGGTGTTGCTGAGAGCAGTGGGTTTCCGAC
TCAAAGTCATGCTCGGGCCTTGGCTTCCAGCGGGGACCGCCAGCCGGAGC
TCGGGCGTGCGGATGACCAAGTCCAGGCCCACGTCATGTCTCGTTTGGCC
CATATGTCGGTGGGTGCTGCGGCGGGGGGGGAGCCCAGCAAGGGCACCAC
GCTCGCGTCTGAGAATGCGGAAAACATCGCTCGTCTGGAACAGGGCCAGA
CGAACATTGTGGCCCAGCTTACCGAGATCGCTGGGTTGCTGAAGAACTTC
CGGCCGGAGTCGGGGCAGGATGGGAGTCGTGGGCCCGGGGGCTCGGGAGG
CCTCGGTCTGGTGCCGGCGTCGTCGCCGTGGGGCGGGGGCGCGGGCGGGG
GGGCGAGTGTGCCCGCGAGGTCCAACGCCAAAGAGGAGGCGAGGAGGGAG
GCCACCATTTGGCAGGCCAAATATAATCAGACACTCTGGGTACTTCGGGG
GCAGCGGGGGCCGGAGCCCGGGCCACAGAANNNN

Coding sequence (CDS) from alignment at Scaffold_170:273140..274023+

>EsuBft1041_8a-0001 ID=EsuBft1041_8a-0001|Name=EsuBft1041_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=741bp|location=Sequence derived from alignment at Scaffold_170:273140..274023+ (Ectocarpus subulatus male Bft15b)
ATGTCATCCGAGCACAAGTCGCCGGAGACGGAAGAGCGCCTTGGTGTCGT
CCGCAGTGAAGGATCTACTGGCGGTCAGGTCGAGTCGGCATTGGGGACGG
GAGGGGGTTCGTTTCCTCCGTCTCAGGTTGTGGCGGGCGCTATTGCGGCG
GCCGCGAGGGCTGCTGCCGGTGGCGTGGATTCACCAGCAGGTGACGTGGC
TTCAACAACGCAATCATCCGCAGATGTTGGTGTTGCTGAGAGCAGTGGGT
TTCCGACTCAAAGTCATGCTCGGGCCTTGGCTTCCAGCGGGGACCGCCAG
CCGGAGCTCGGGCGTGCGGATGACCAAGTCCAGGCCCACGTCATGTCTCG
TTTGGCCCATATGTCGGTGGGTGCTGCGGCGGGGGGGGAGCCCAGCAAGG
GCACCACGCTCGCGTCTGAGAATGCGGAAAACATCGCTCGTCTGGAACAG
GGCCAGACGAACATTGTGGCCCAGCTTACCGAGATCGCTGGGTTGCTGAA
GAACTTCCGGCCGGAGTCGGGGCAGGATGGGAGTCGTGGGCCCGGGGGCT
CGGGAGGCCTCGGTCTGGTGCCGGCGTCGTCGCCGTGGGGCGGGGGCGCG
GGCGGGGGGGCGAGTGTGCCCGCGAGGTCCAACGCCAAAGAGGAGGCGAG
GAGGGAGGCCACCATTTGGCAGGCCAAATATAATCAGACACTCTGGGTAC
TTCGGGGGCAGCGGGGGCCGGAGCCCGGGCCACAGAANNNN