EsuBft1041_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1041_4a-0001
Unique NameEsuBft1041_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:318486..319674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft1041_4
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length91
Hectar predicted targeting categoryother localisation
Evalue4.74e-37
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_4aEsuBft1041_4aEctocarpus subulatus male Bft15bgeneScaffold_170 318486..319674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_4a-0001EsuBft1041_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 318992..319674 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_4a-0001-exonEsuBft1041_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 318486..318522 -
EsuBft1041_4a-0001-exonagat-exon-68451Ectocarpus subulatus male Bft15bexonScaffold_170 318675..319382 -
EsuBft1041_4a-0001-exonagat-exon-68452Ectocarpus subulatus male Bft15bexonScaffold_170 319505..319674 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_4a-0001-exonagat-three_prime_utr-408Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 318486..318522 -
EsuBft1041_4a-0001-exonagat-three_prime_utr-409Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 318675..318991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_4a-0001-cdsEsuBft1041_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 318992..319382 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1041_4a-0001 ID=EsuBft1041_4a-0001|Name=EsuBft1041_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=915bp|location=Sequence derived from alignment at Scaffold_170:318486..319674- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGTGTGTGCCGACGAGAGGGTTCCGGCACCTGTCTCGGACGGAGG
ATCCGTCGAGCAACCAGGGGCGCTGATCCCCTACGAAGGACCCTACGGCA
AGTGGGGGCGCTTCGTGAAGGAGCTGAGGGACAACACCGACCAGATACCG
TTGGGGTTCGTGACCGGACAGTGCGCGATCATCTTCCGCGGCAAAGGAAC
CGGCATCACCAAGGTGGAGAAGGTAGCATACGACAAGCGCATAGATGTCT
TCTTCCAGCCCAAGGCCTGGGCCGACAGCGACTTCTGCATGCAATTGCTG
GAGCGCTCTTTTCGCCCGAGCCGAATGGTAGACGGGAAGGTGCCCGAGGA
GCAGTCGCTTCTCCTCGCCGACAACCTACACGGGCAGACGACTGAGGAAT
TCCGCAAGAATCTCCACAAGGAGTGCAACACGCTTCTTTGGCACCTGCTG
GCAGGCTGTACGGACGCGGTCCAGCCGATCGACGCCGGCTATGGACGGCG
GCTGAACGTGGCTGTGGGGGTGCAGCTGAACAAGTGGCTGGAGAGCGGAG
ACAACCTGTAAAAGTGGGAGGCCAAAGCACTGACGTGTTCCGAACGTCGC
GTATTGCTTACCAGTTGGGTGGCACAGGCGACCGAGGAGATCGATAAAGA
TAAGCAATATCGGTTCCGCCTCTTGGAGAAAACCGGATGTGGAATGACGG
CGGATGGCTCTGGGGACGACAAAATCAACCTCGAGGGCCTTTCCACATAT
ATATTCCTTCATGGATATGGAGGGTGGCGCCAGCGCTGATGAGGAGGGCA
AGGAGGATGGGGACACCGGCAAGGTTGACGTGGACCAGCTGTCGGAGGAC
GCCTCTTCCAGCGATGATGAGAGCGACGGAGACAATGGCAACGATAAGGG
CCCGCTGACCCAGCT
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protein sequence of EsuBft1041_4a-0001

>EsuBft1041_4 ID=EsuBft1041_4|Name=EsuBft1041_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=186bp
MFVCADERVPAPVSDGGSVEQPGALIPYEGPYGKWGRFVKELRDNTDQIP
LGFVTGQCAIIFRGKGTGITKVEKVAYDKRIDVFFQPKAWADSDFCMQLL
ERSFRPSRMVDGKVPEEQSLLLADNLHGQTTEEFRKNLHKECNTLLWHLL
AGCTDAVQPIDAGYGRRLNVAVGVQLNKWLESGDNL
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mRNA from alignment at Scaffold_170:318486..319674-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1041_4a-0001 ID=EsuBft1041_4a-0001|Name=EsuBft1041_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1189bp|location=Sequence derived from alignment at Scaffold_170:318486..319674- (Ectocarpus subulatus male Bft15b)
ATGTTTGTGTGTGCCGACGAGAGGGTTCCGGCACCTGTCTCGGACGGAGG
ATCCGTCGAGCAACCAGGGGCGCTGATCCCCTACGAAGGACCCTACGGCA
AGTGGGGGCGCTTCGTGAAGGAGCTGAGGGACAACACCGACCAGATACCG
TTGGGGTTCGTGACCGGACAGTAAGACACCTGGGACAAAAGAGGGGCGAA
GCGTGTGCATGTTGGCCACAGCCATTCCCCGGCTTGGAGAAGCGGCAGTG
CACGGTGCAACCGACGATAGGAGCGGGCGGGAAAAAGACGAGGTGCGCGA
TCATCTTCCGCGGCAAAGGAACCGGCATCACCAAGGTGGAGAAGGTAGCA
TACGACAAGCGCATAGATGTCTTCTTCCAGCCCAAGGCCTGGGCCGACAG
CGACTTCTGCATGCAATTGCTGGAGCGCTCTTTTCGCCCGAGCCGAATGG
TAGACGGGAAGGTGCCCGAGGAGCAGTCGCTTCTCCTCGCCGACAACCTA
CACGGGCAGACGACTGAGGAATTCCGCAAGAATCTCCACAAGGAGTGCAA
CACGCTTCTTTGGCACCTGCTGGCAGGCTGTACGGACGCGGTCCAGCCGA
TCGACGCCGGCTATGGACGGCGGCTGAACGTGGCTGTGGGGGTGCAGCTG
AACAAGTGGCTGGAGAGCGGAGACAACCTGTAAAAGTGGGAGGCCAAAGC
ACTGACGTGTTCCGAACGTCGCGTATTGCTTACCAGTTGGGTGGCACAGG
CGACCGAGGAGATCGATAAAGATAAGCAATATCGGTTCCGCCTCTTGGAG
AAAACCGGATGTGGAATGACGGCGGATGGCTCTGGGGACGACAAAATCAA
CCTCGAGGGCCTTTCCACATATATATTCCTTCATGGATATGGAGGGTGGC
GCCAGCGCTGATGAGGAGGGCAAGGAGGATGGGGACACCGGCAAGGTTGA
CGTGGACCAGCTGTCGGAGGACGCCTCTTCCAGCGATGATGAGAGCGACG
GTAAGTGATATTGTATTTCGCGTTCATAGCACAGAAGAATTACCCTTGCG
GAAGAAAGCTCCTCTTGTTGACACATTAATGAGTGTTGGAATATTGTCCC
CGCTCCGGGAATCGCCACAACAATAGACGATGCGTCCGCTGTGCCTTGTC
AGGAGACAATGGCAACGATAAGGGCCCGCTGACCCAGCT
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Coding sequence (CDS) from alignment at Scaffold_170:318486..319674-

>EsuBft1041_4a-0001 ID=EsuBft1041_4a-0001|Name=EsuBft1041_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=561bp|location=Sequence derived from alignment at Scaffold_170:318486..319674- (Ectocarpus subulatus male Bft15b)
ATGTTTGTGTGTGCCGACGAGAGGGTTCCGGCACCTGTCTCGGACGGAGG
ATCCGTCGAGCAACCAGGGGCGCTGATCCCCTACGAAGGACCCTACGGCA
AGTGGGGGCGCTTCGTGAAGGAGCTGAGGGACAACACCGACCAGATACCG
TTGGGGTTCGTGACCGGACAGTGCGCGATCATCTTCCGCGGCAAAGGAAC
CGGCATCACCAAGGTGGAGAAGGTAGCATACGACAAGCGCATAGATGTCT
TCTTCCAGCCCAAGGCCTGGGCCGACAGCGACTTCTGCATGCAATTGCTG
GAGCGCTCTTTTCGCCCGAGCCGAATGGTAGACGGGAAGGTGCCCGAGGA
GCAGTCGCTTCTCCTCGCCGACAACCTACACGGGCAGACGACTGAGGAAT
TCCGCAAGAATCTCCACAAGGAGTGCAACACGCTTCTTTGGCACCTGCTG
GCAGGCTGTACGGACGCGGTCCAGCCGATCGACGCCGGCTATGGACGGCG
GCTGAACGTGGCTGTGGGGGTGCAGCTGAACAAGTGGCTGGAGAGCGGAG
ACAACCTGTAA
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