EsuBft1041_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1041_12a-0001
Unique NameEsuBft1041_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:256021..257117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog38727.Pavir.J14830.1.p
ProteomeIdEsuBft1041_12
Protein domainsIPR018289
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl35493|Streptophyta
Length83
Hectar predicted targeting categoryother localisation
Evalue3.08e-06
EggNOG OGs2CN5X@1|root,2QU1T@2759|Eukaryota,37T40@33090|Viridiplantae,3GGBN@35493|Streptophyta,3M4TZ@4447|Liliopsida,3INCD@38820|Poales
Date last modified2016-06-13
Date creation2016-06-13
Descriptionsource UniProtKB
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_12aEsuBft1041_12aEctocarpus subulatus male Bft15bgeneScaffold_170 256021..257117 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_12a-0001-exonagat-exon-68476Ectocarpus subulatus male Bft15bexonScaffold_170 256021..256545 -
EsuBft1041_12a-0001-exonEsuBft1041_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 256809..257117 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_12a-0001-exonagat-three_prime_utr-406Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 256021..256533 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_12a-0001-cdsEsuBft1041_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 256534..256545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_12a-0001EsuBft1041_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 256534..257117 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1041_12a-0001 ID=EsuBft1041_12a-0001|Name=EsuBft1041_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=834bp|location=Sequence derived from alignment at Scaffold_170:256021..257117- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTTTGTCACTGCAAGGGCGACTGGGACGGGCCGATCGGGGCCAT
CAGCGTCAAGAGCGCCAACAACAACGTCCTTCAAGTGGCGACGTGCCTCC
ACCCGAAGGAGACCGCCGACGCCTACACCTACCTCATGTCCAACGCCCTC
AAGAACCCGGAGATGGCAGCGTTTCTCAACAAGCCCACCACGACCATCAT
CACCGACAAGCACAAGGGCTCGGAGTCTGCCGTTCCCAGGGTGCTGCAAC
TCGCAGAACACCTGAAGTGCGCGGAACACATTCTGAAGAATGCGGGGATT
ACCGGACCGAGCGACTGTTGATCCCAGCGTCGGATCTATCTTCGGCGGTC
GATTTCAGTTGTGGTGGCTTGCCGGCGGGCGGCAAGTTGTTGTCGGTCGG
TGTTTTTTTGCCTGCTGCGAAGTGTTTTTGCTGCTGGCTCTTTTGCGGGT
ATCGGGCTGGTGGTGCTGCGGGGAGATGGCCGCGTTCAATCTCCCCACGA
ACCGGCTGTGGTGAACAAAAAGGGGTGGTCAGATGGACAAAATAGGGTCG
GAGGTTATGTTTTTCTCGGGGTAAGGGTCGACCCTGCAGGTTTTAGGACA
AAATCGGGTGGTCTGCGGAGAGGTTTTTGTACGCGGCTGCGTCTACACTG
TTTTAGGTTGTTAGCGGGAAAAAAAGGGTTGGAGAGGGTCGGCGCGCCTT
GTGCGCGGCGGGTGGAGGCGCTGTGGCGCGATATCGTGCGGTATTGGGTG
TGTGCGTCGTCGCGCCGCGGCACGTTCAGAAGGCGTCCCGATTTTGCACA
TTGTACCCCAGGGACGTCCCGATTTTGTCCAATC
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protein sequence of EsuBft1041_12a-0001

>EsuBft1041_12 ID=EsuBft1041_12|Name=EsuBft1041_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=106bp
MDFCHCKGDWDGPIGAISVKSANNNVLQVATCLHPKETADAYTYLMSNAL
KNPEMAAFLNKPTTTIITDKHKGSESAVPRVLQLAEHLKCAEHILKNAGI
TGPSDC
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mRNA from alignment at Scaffold_170:256021..257117-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1041_12a-0001 ID=EsuBft1041_12a-0001|Name=EsuBft1041_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1097bp|location=Sequence derived from alignment at Scaffold_170:256021..257117- (Ectocarpus subulatus male Bft15b)
ATGGACTTTTGTCACTGCAAGGGCGACTGGGACGGGCCGATCGGGGCCAT
CAGCGTCAAGAGCGCCAACAACAACGTCCTTCAAGTGGCGACGTGCCTCC
ACCCGAAGGAGACCGCCGACGCCTACACCTACCTCATGTCCAACGCCCTC
AAGAACCCGGAGATGGCAGCGTTTCTCAACAAGCCCACCACGACCATCAT
CACCGACAAGCACAAGGGCTCGGAGTCTGCCGTTCCCAGGGTGCTGCAAC
TCGCAGAACACCTGAAGTGCGCGGAACACATTCTGAAGAATGCGGGGATT
ACCGGACCGGTAAAACGGAATTTCAGGGGTGGTTCGGTGTGCTGGTCGTT
GCTTGATTTGCAGTTGCTGCCAATCTTAAAAACCCAACCTCGCCAAATCG
TCCAATAAAAGTTCGCTCTCTGCGCGTGCTGGGTAGCCCTTGAGCGTGTG
TGTTGAACTTTGTCGAAGAGTTGCGCACCGGGCGAGAGGGTTTTGCAGTC
ACTCGAGAGGGAAGTGGCGAGAGCGAGAGGGCAGAGCGGAGGAAGTTTTC
CGCGAATGTCCGTTCGCTGCAGAGCGACTGTTGATCCCAGCGTCGGATCT
ATCTTCGGCGGTCGATTTCAGTTGTGGTGGCTTGCCGGCGGGCGGCAAGT
TGTTGTCGGTCGGTGTTTTTTTGCCTGCTGCGAAGTGTTTTTGCTGCTGG
CTCTTTTGCGGGTATCGGGCTGGTGGTGCTGCGGGGAGATGGCCGCGTTC
AATCTCCCCACGAACCGGCTGTGGTGAACAAAAAGGGGTGGTCAGATGGA
CAAAATAGGGTCGGAGGTTATGTTTTTCTCGGGGTAAGGGTCGACCCTGC
AGGTTTTAGGACAAAATCGGGTGGTCTGCGGAGAGGTTTTTGTACGCGGC
TGCGTCTACACTGTTTTAGGTTGTTAGCGGGAAAAAAAGGGTTGGAGAGG
GTCGGCGCGCCTTGTGCGCGGCGGGTGGAGGCGCTGTGGCGCGATATCGT
GCGGTATTGGGTGTGTGCGTCGTCGCGCCGCGGCACGTTCAGAAGGCGTC
CCGATTTTGCACATTGTACCCCAGGGACGTCCCGATTTTGTCCAATC
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Coding sequence (CDS) from alignment at Scaffold_170:256021..257117-

>EsuBft1041_12a-0001 ID=EsuBft1041_12a-0001|Name=EsuBft1041_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=321bp|location=Sequence derived from alignment at Scaffold_170:256021..257117- (Ectocarpus subulatus male Bft15b)
ATGGACTTTTGTCACTGCAAGGGCGACTGGGACGGGCCGATCGGGGCCAT
CAGCGTCAAGAGCGCCAACAACAACGTCCTTCAAGTGGCGACGTGCCTCC
ACCCGAAGGAGACCGCCGACGCCTACACCTACCTCATGTCCAACGCCCTC
AAGAACCCGGAGATGGCAGCGTTTCTCAACAAGCCCACCACGACCATCAT
CACCGACAAGCACAAGGGCTCGGAGTCTGCCGTTCCCAGGGTGCTGCAAC
TCGCAGAACACCTGAAGTGCGCGGAACACATTCTGAAGAATGCGGGGATT
ACCGGACCGAGCGACTGTTGA
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