EsuBft1041_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1041_11a-0001
Unique NameEsuBft1041_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:259152..259568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1041_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length41
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_11aEsuBft1041_11aEctocarpus subulatus male Bft15bgeneScaffold_170 259152..259568 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_11a-0001-exonEsuBft1041_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 259152..259568 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_11a-0001-exonagat-three_prime_utr-405Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 259152..259206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_11a-0001-cdsEsuBft1041_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 259207..259458 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_11a-0001-exonagat-five_prime_utr-253Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_170 259459..259568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_11a-0001EsuBft1041_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 259207..259458 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1041_11a-0001 ID=EsuBft1041_11a-0001|Name=EsuBft1041_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=417bp|location=Sequence derived from alignment at Scaffold_170:259152..259568- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCCAGGCTCATGTCAAAGCCAACAAGCGCGCGGACAAGCACTTCTACGT
CACCAGCGTTTGCTACGATCACCAAAACTGCGCGGGAGGCACGAAGAAAC
GAGCGTGGCCATGGCTGCGGAAGGCGCGGTGGTCGTTCGCGGCAACCCCA
AGGTCTCTGCTCCTGCGCTCGCGAAGACGCTGAAGGGCGCCCACGGGGTG
GACATGGCGACGTGGGCAGCGGGCCGTGTCAAGCGCGGCGTGACCAACGG
TCAGGAGGACACGAAGAAGGAGGGAATCCAGCGGCTCGCCAGCTTCTTGG
ACCTGATTGCGACCGACAGCCCAGGGACGATCACGGACTGCAAGGTGGGT
GTTGGTGTGTAGATGGTGCTGCTTCGGTGTAGACCCTTGTGCACCGTGCT
CTTTTTGTTTTGTGGCG
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protein sequence of EsuBft1041_11a-0001

>EsuBft1041_11 ID=EsuBft1041_11|Name=EsuBft1041_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=83bp
MAAEGAVVVRGNPKVSAPALAKTLKGAHGVDMATWAAGRVKRGVTNGQED
TKKEGIQRLASFLDLIATDSPGTITDCKVGVGV
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mRNA from alignment at Scaffold_170:259152..259568-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1041_11a-0001 ID=EsuBft1041_11a-0001|Name=EsuBft1041_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=417bp|location=Sequence derived from alignment at Scaffold_170:259152..259568- (Ectocarpus subulatus male Bft15b)
TGCCAGGCTCATGTCAAAGCCAACAAGCGCGCGGACAAGCACTTCTACGT
CACCAGCGTTTGCTACGATCACCAAAACTGCGCGGGAGGCACGAAGAAAC
GAGCGTGGCCATGGCTGCGGAAGGCGCGGTGGTCGTTCGCGGCAACCCCA
AGGTCTCTGCTCCTGCGCTCGCGAAGACGCTGAAGGGCGCCCACGGGGTG
GACATGGCGACGTGGGCAGCGGGCCGTGTCAAGCGCGGCGTGACCAACGG
TCAGGAGGACACGAAGAAGGAGGGAATCCAGCGGCTCGCCAGCTTCTTGG
ACCTGATTGCGACCGACAGCCCAGGGACGATCACGGACTGCAAGGTGGGT
GTTGGTGTGTAGATGGTGCTGCTTCGGTGTAGACCCTTGTGCACCGTGCT
CTTTTTGTTTTGTGGCG
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Coding sequence (CDS) from alignment at Scaffold_170:259152..259568-

>EsuBft1041_11a-0001 ID=EsuBft1041_11a-0001|Name=EsuBft1041_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=252bp|location=Sequence derived from alignment at Scaffold_170:259152..259568- (Ectocarpus subulatus male Bft15b)
ATGGCTGCGGAAGGCGCGGTGGTCGTTCGCGGCAACCCCAAGGTCTCTGC
TCCTGCGCTCGCGAAGACGCTGAAGGGCGCCCACGGGGTGGACATGGCGA
CGTGGGCAGCGGGCCGTGTCAAGCGCGGCGTGACCAACGGTCAGGAGGAC
ACGAAGAAGGAGGGAATCCAGCGGCTCGCCAGCTTCTTGGACCTGATTGC
GACCGACAGCCCAGGGACGATCACGGACTGCAAGGTGGGTGTTGGTGTGT
AG
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