EsuBft1041_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1041_10a-0001
Unique NameEsuBft1041_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:260919..261721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1041_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length54
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_10aEsuBft1041_10aEctocarpus subulatus male Bft15bgeneScaffold_170 260919..261721 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_10a-0001-exonEsuBft1041_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 260919..261454 -
EsuBft1041_10a-0001-exonagat-exon-68475Ectocarpus subulatus male Bft15bexonScaffold_170 261712..261721 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_10a-0001-exonagat-three_prime_utr-404Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 260919..261338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_10a-0001-cdsEsuBft1041_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 261339..261454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_10a-0001EsuBft1041_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 261339..261721 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1041_10a-0001 ID=EsuBft1041_10a-0001|Name=EsuBft1041_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=546bp|location=Sequence derived from alignment at Scaffold_170:260919..261721- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGAGTGTGCGCGGCAGCAACCAGAACTGGAGGACATGGCGCGGCA
GGAGCTAGAACGTTGTCTTCGCTGGAGACCGTCTTCGTCGCACCCCAGGA
CTCATTTGTTGCGTGGGCCGTCTTAGTCGCACCCCAGGACTTATTTGTTG
CGTTGATGTCATGGTGGGGGGAAGCAGTTTTCCCGTCGTTCACATGCTTA
TTCGCATCGTTGATGTCATGGTGGGGGGAAGCAGTTTTCTGGTGTTGTTA
TTTGGATGGTGAAGTCTGGGTGTCTCTGGTGAATTCGGTGCTATCGGAGG
ATGAGGTTTCTTGAGGTTCAGTCGTGATGATGGGGTTCACTTTTTTGAGC
CTATGTCTTTGCTCCTACTCGGTAGGCGGTACCGAGTCGATGTTTGATTG
GTTCGTCCATTGTGTGTAAGCGTGCATGCGTAGACTTGGTAGGTCCTGTA
GGACTTGGTCGCAATCGCTGTCATGATTGTGATAAGACGTATAGCCAGTG
GCGGTATGTCGGTCTACTCCACTGGCATGGAGATCGCGCTCCATGC
back to top

protein sequence of EsuBft1041_10a-0001

>EsuBft1041_10 ID=EsuBft1041_10|Name=EsuBft1041_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=41bp
MWECARQQPELEDMARQELERCLRWRPSSSHPRTHLLRGPS
back to top

mRNA from alignment at Scaffold_170:260919..261721-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1041_10a-0001 ID=EsuBft1041_10a-0001|Name=EsuBft1041_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=803bp|location=Sequence derived from alignment at Scaffold_170:260919..261721- (Ectocarpus subulatus male Bft15b)
ATGTGGGAGTGTAAAGCTATCCCCCAAACTAGTGTAGAATGGCGATTGGA
TGCCTACATTGCGCGTGACATCTTCCCTACCCGGAACTAGCTTCCCAGCG
TACTCGCCACACCACGTATTAGCTTCCCAGCACACTCACCGCACCACCGC
GTGTGCCGTCGTCCGCCCGTGAAACTCGGAGTATCTCCCTTTAGGTTTCA
CCTTCCGAAGACTAAAGCAGAAGGCTGAAGCTTCAGGGACAAGAGTTGTC
GAGACCGTTACTGACAGGTGCGCGGCAGCAACCAGAACTGGAGGACATGG
CGCGGCAGGAGCTAGAACGTTGTCTTCGCTGGAGACCGTCTTCGTCGCAC
CCCAGGACTCATTTGTTGCGTGGGCCGTCTTAGTCGCACCCCAGGACTTA
TTTGTTGCGTTGATGTCATGGTGGGGGGAAGCAGTTTTCCCGTCGTTCAC
ATGCTTATTCGCATCGTTGATGTCATGGTGGGGGGAAGCAGTTTTCTGGT
GTTGTTATTTGGATGGTGAAGTCTGGGTGTCTCTGGTGAATTCGGTGCTA
TCGGAGGATGAGGTTTCTTGAGGTTCAGTCGTGATGATGGGGTTCACTTT
TTTGAGCCTATGTCTTTGCTCCTACTCGGTAGGCGGTACCGAGTCGATGT
TTGATTGGTTCGTCCATTGTGTGTAAGCGTGCATGCGTAGACTTGGTAGG
TCCTGTAGGACTTGGTCGCAATCGCTGTCATGATTGTGATAAGACGTATA
GCCAGTGGCGGTATGTCGGTCTACTCCACTGGCATGGAGATCGCGCTCCA
TGC
back to top

Coding sequence (CDS) from alignment at Scaffold_170:260919..261721-

>EsuBft1041_10a-0001 ID=EsuBft1041_10a-0001|Name=EsuBft1041_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=126bp|location=Sequence derived from alignment at Scaffold_170:260919..261721- (Ectocarpus subulatus male Bft15b)
ATGTGGGAGTGTGCGCGGCAGCAACCAGAACTGGAGGACATGGCGCGGCA
GGAGCTAGAACGTTGTCTTCGCTGGAGACCGTCTTCGTCGCACCCCAGGA
CTCATTTGTTGCGTGGGCCGTCTTAG
back to top