EsuBft1040_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1040_8a-0001
Unique Name	EsuBft1040_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_420	contig	Scaffold_420:428..3396 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FZS4
ProteomeId	EsuBft1040_8
Protein domains	TRANSMEMBRANE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	194
Hectar predicted targeting category	other localisation
Evalue	1.22e-43
EggNOG OGs	2D50F@1\|root,2SWWM@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1040_8a	EsuBft1040_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_420 428..3396 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1040_8a-0001-exon	agat-exon-54489	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 428..641 -
EsuBft1040_8a-0001-exon	agat-exon-54491	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 1153..1416 -
EsuBft1040_8a-0001-exon	EsuBft1040_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 1666..1868 -
EsuBft1040_8a-0001-exon	agat-exon-54490	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 2131..3396 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1040_8a-0001-cds	EsuBft1040_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_420 428..641 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1040_8a-0001	EsuBft1040_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_420 428..3396 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_420:428..3396-
coding sequence from alignment at Scaffold_420:428..3396-

spliced messenger RNA

>EsuBft1040_8a-0001 ID=EsuBft1040_8a-0001|Name=EsuBft1040_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1947bp|location=Sequence derived from alignment at Scaffold_420:428..3396- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGCCCAAAGGGTAAGCGCAAGCTGCCAAGGAACGCCGACGGCAC
GATTCGGAAGGCCCCTTCGCCCCCTGCGGACCCTGCTGTAGGCAACGACT
CTCCTCCCTCTTCCGACCATGAAGGCGCCAATATTTCTCCCATGCACACC
AACGACCACGACGACGACTGGCGCGATGAGGATGCGGGTGGCGAGCCAGG
TCGCGGGCAGGCGAAACTGCCGTTCGGTTCTGCGGTTCGCTCTGCAGCGA
GCGCTGCGGTGTCTGCAGCAGCTCGCACAGCAATGGCGGTGGCGCCCGAA
GTCGCGCCGCCTGCGCGAAAAAACGCGGTGCAACCTCTCCACCGGTCGAC
GCAGCATCGCCACAGGCGAGCGCGGTGGAGCAAGGAGGACGCCGGGATGG
CGGGGAGCTTGGCAGCATGGCTGAAGCCCCCAGCTCAGCAGCAGGAAGGG
CAGCATGGTTCGCCTCAAATTATGGAGACTGAAGGTGCGGTGGAGATGGA
TGTTGAGGTGGGAGATGTTGGTGCGGACAGCAGTGATCATGATGCCGAGA
AGATCTGCAGCCCGCAAGAAGAACATGACCGCACCAGCCGTGGCGACAGC
AGCGAGAGCGAGACCGACATGCTGGTATGTTCGGGTGTTGGTGTTCCGCT
GGAAGATTGGTTTGGTGAGGATGACCAGGCTAGAGCTGCGAAGCTTCTTA
ATTCCAGCGGCGAGGACAGTTTTCTCGACGCACTAGACGCAAGCCGCGAC
CGCTCTCGCGGCCCCGGCGAACTTGACGGAGAGAGCGGCGACAAGGCTGA
TGATGATGTTCAGCCTCAGGACACCGGCGAAGCAGAAGCTGTGGGAGACA
CCGGCGAAACAGCAGCTGTGGGAGGAGCCGGGCACGCAGCCTCTAGCGGA
ACAAGTGGCGAGACCGTCCGAGAAAGTTCGAGGACGAACCTTTTGGACGG
GCTGTACGCCGACCCCGCCCGCGCACGAGACGAGACATGCGGCCGATGCA
GTGGGCCTGGGCGAGGAACACGGGTGGCGTCGGGGGATGGAGCCAAGGGG
AGGTTTGCGGGGTTGAACAAAAAACGATTGAAGCACAGAAGGCGCGAGGA
GAGGAAGAAGACACCGGAACAACGAGCGCGAGAGCGAGAAGCGCGAGAGC
GAGCGCGAGAGCGAACGCGAGAGCGAGCACTCAAAGCGCAGAGAAGGCGG
GAGAACACGCCGCGAGAGAAGGAGCTCTTGGACATCTACCAGAAAGTGGT
GGACGCTATCGACAAGGCGGAGCAGTCCAACAGCTACAGCGGTATTGTGG
AGGACCCGACGGAAATGCTGACGGAATCTCGTCTCCCGTCCATCATGTGT
ACCGCCTTGGCGATTCGGGCGTACGCTGTCCTCGAGGAAGTGGAAACGCC
CAAGAAGCGCCGTGTGCTTGCTGCTTGCACTGCTGCATTTCTGCTCTTTG
AGATCGCCCTTGCCCTCTGGATTGAGGAAGGTGTCAACAAGATGCGGCAC
AGCCGCTACGTCGGAGATGTGGTGAAAACCACAGCGCAGACGGTGCGCAA
GTGGGTAAAGGAGTTCTGCCAAGACGGAAAATTTCTCATCAGAAAACGAC
TTTACGAGATAAGCCAGGCGGACTCCTTCATCGACCATGAGGACATCGCC
GAGCGTTGCCGGGAGGAAATCGACCGGCGGCTTTACCGCCGGAAGAAAAC
GGATCCGCGGTTTCGTGTCTCGGACTTTCAGAGGTGGGTGAACACTGTTC
TTCTGAAAGAAGTGTTTTCCGGCGGAGGAGGCATCTCTCGGACAACGGCG
CACAGCTGGATCTGCAGACTCGGCTTCAGGTGGAAGAAGAGCGGGAAGTG
CGTCTACGTCGATGGCCACAACCGCCCGGATGTCGTCGAGGCCCGGCGGG
AGTACGTGGCGAAGATGCTCATCCTGCGAAAGATGATGTCCATGTGA

protein sequence of EsuBft1040_8a-0001

>EsuBft1040_8 ID=EsuBft1040_8|Name=EsuBft1040_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=648bp
MGRPKGKRKLPRNADGTIRKAPSPPADPAVGNDSPPSSDHEGANISPMHT
NDHDDDWRDEDAGGEPGRGQAKLPFGSAVRSAASAAVSAAARTAMAVAPE
VAPPARKNAVQPLHRSTQHRHRRARWSKEDAGMAGSLAAWLKPPAQQQEG
QHGSPQIMETEGAVEMDVEVGDVGADSSDHDAEKICSPQEEHDRTSRGDS
SESETDMLVCSGVGVPLEDWFGEDDQARAAKLLNSSGEDSFLDALDASRD
RSRGPGELDGESGDKADDDVQPQDTGEAEAVGDTGETAAVGGAGHAASSG
TSGETVRESSRTNLLDGLYADPARARDETCGRCSGPGRGTRVASGDGAKG
RFAGLNKKRLKHRRREERKKTPEQRAREREARERARERTRERALKAQRRR
ENTPREKELLDIYQKVVDAIDKAEQSNSYSGIVEDPTEMLTESRLPSIMC
TALAIRAYAVLEEVETPKKRRVLAACTAAFLLFEIALALWIEEGVNKMRH
SRYVGDVVKTTAQTVRKWVKEFCQDGKFLIRKRLYEISQADSFIDHEDIA
ERCREEIDRRLYRRKKTDPRFRVSDFQRWVNTVLLKEVFSGGGGISRTTA
HSWICRLGFRWKKSGKCVYVDGHNRPDVVEARREYVAKMLILRKMMSM

mRNA from alignment at Scaffold_420:428..3396-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1040_8a-0001 ID=EsuBft1040_8a-0001|Name=EsuBft1040_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2969bp|location=Sequence derived from alignment at Scaffold_420:428..3396- (Ectocarpus subulatus male Bft15b)
ATGGGTCGCCCAAAGGGTAAGCGCAAGCTGCCAAGGAACGCCGACGGCAC
GATTCGGAAGGCCCCTTCGCCCCCTGCGGACCCTGCTGTAGGCAACGACT
CTCCTCCCTCTTCCGACCATGAAGGCGCCAATATTTCTCCCATGCACACC
AACGACCACGACGACGACTGGCGCGATGAGGATGCGGGTGGCGAGCCAGG
TCGCGGGCAGGCGAAACTGCCGTTCGGTTCTGCGGTTCGCTCTGCAGCGA
GCGCTGCGGTGTCTGCAGCAGCTCGCACAGCAATGGCGGTGGCGCCCGAA
GTCGCGCCGCCTGCGCGAAAAAACGCGGTGCAACCTCTCCACCGGTCGAC
GCAGCATCGCCACAGGCGAGCGCGGTGGAGCAAGGAGGACGCCGGGATGG
CGGGGAGCTTGGCAGCATGGCTGAAGCCCCCAGCTCAGCAGCAGGAAGGG
CAGCATGGTTCGCCTCAAATTATGGAGACTGAAGGTGCGGTGGAGATGGA
TGTTGAGGTGGGAGATGTTGGTGCGGACAGCAGTGATCATGATGCCGAGA
AGATCTGCAGCCCGCAAGAAGAACATGACCGCACCAGCCGTGGCGACAGC
AGCGAGAGCGAGACCGACATGCTGGTATGTTCGGGTGTTGGTGTTCCGCT
GGAAGATTGGTTTGGTGAGGATGACCAGGCTAGAGCTGCGAAGCTTCTTA
ATTCCAGCGGCGAGGACAGTTTTCTCGACGCACTAGACGCAAGCCGCGAC
CGCTCTCGCGGCCCCGGCGAACTTGACGGAGAGAGCGGCGACAAGGCTGA
TGATGATGTTCAGCCTCAGGACACCGGCGAAGCAGAAGCTGTGGGAGACA
CCGGCGAAACAGCAGCTGTGGGAGGAGCCGGGCACGCAGCCTCTAGCGGA
ACAAGTGGCGAGACCGTCCGAGAAAGTTCGAGGACGAACCTTTTGGACGG
GCTGTACGCCGACCCCGCCCGCGCACGAGACGAGACATGCGGCCGATGCA
GTGGGCCTGGGCGAGGAACACGGGTGGCGTCGGGGGATGGAGCCAAGGGG
AGGTTTGCGGGGTTGAACAAAAAACGATTGAAGCACAGAAGGCGCGAGGA
GAGGAAGAAGACACCGGAACAACGAGCGCGAGAGCGAGAAGCGCGAGAGC
GAGCGCGAGAGCGAACGCGAGAGCGAGCACTCAAAGCGCAGAGAAGGCGG
GAGAACACGCCGCGAGAGAAGGAGCTCTTGGACATCTACCAGAAAGTGGT
GGACGCTATCGACAAGGTGAATAAGTATGCAATGTATTTCAGAGTGTTGC
GTGGTAGTGTTGTTGCCGTTGACTAGTTTGCTGCTAGCATACTGCTTCCC
TCGTGGCTGCTGTTTCCTTTATCCTGGATTTGTTGTGGAGCTGGTGCCAC
TGCCGAAACCATTCCTGCTTGTCTGTCAACAATAATTTGCAACTGTTGAA
TGCAACCATGTCCCTCAATCTGACGCCTTCCCGGTTTTGATTGCTTGAAT
TTCAATTTCTGTGCACACCTCCGTACAGGCGGAGCAGTCCAACAGCTACA
GCGGTATTGTGGAGGACCCGACGGAAATGCTGACGGAATCTCGTCTCCCG
TCCATCATGTGTACCGCCTTGGCGATTCGGGCGTACGCTGTCCTCGAGGA
AGTGGAAACGCCCAAGAAGCGCCGTGTGCTTGCTGCTTGCACTGCTGCAT
TTCTGCTCTTTGAGATCGCCCTTGCCCTCTGGTTCGTGGCGTGCTCTGTA
CATACATACAATGTTCCCTGGCGAAGTGGTTGCCGAGTAGCATGTGTAGC
TGGTACGTTTGGTGATTATCTGTTTGTTGCATTTTTGGACCCTCTTCCTA
TGTGTGACCGGGCGCACGGGGTACGTTGTGTATTTCTGCCATGCTCTCTT
CAGAGTCGTAACGCCGAAGGCTTGAAGAATATTCTTGTGTGTAGCACTCA
TCGTTCCCATGTTGACGCCGTTGCCTTCAGGATTGAGGAAGGTGTCAACA
AGATGCGGCACAGCCGCTACGTCGGAGATGTGGTGAAAACCACAGCGCAG
ACGGTGCGCAAGTGGGTAAAGGAGTTCTGCCAAGACGGAAAATTTCTCAT
CAGAAAACGACTTTACGAGATAAGCCAGGCGGACTCCTTCATCGACCATG
AGGACATCGCCGAGCGTTGCCGGGAGGAAATCGACCGGCGGCTTTACCGC
CGGAAGAAAACGGATCCGCGGTTTCGTGTCTCGGACTTTCAGAGGTAAGG
GGACGGACGTGAAAATGAGAGAGCGCGCGGTTAGTGTTCCTGTTGGGTTG
AACGGCGTTGGTTTTGTGTTCGTCTTCTGTGCGCCCGTGTGTTGTGGATA
CATGCGGACTAATTTCTCCAACTCTCTTCTGTTACCGCTTGCCTCTCCAC
TGCAAAATAGGTGGGTGAACACTGTTCTTCTGAAAGAAGTGTTTTCCGGC
GGAGGAGGCATCTCTCGGACAACGGCACACAGCTGGATCTGCAGACTCGG
CTTCAGGTGGAAGAAGAACGGGAAGNCGACCGGCGGCTTTACCGCCGGAA
GAAAACGGATCCGCGGTTTCGTGTCATGTACTTTCAGAGGTATGGGGACG
GACGTGAAAATGAGAGAGCGCGCGGTTAGTGTTCCTGTTGGGTTGAACGG
CGTTGGTTTTGTGTTCGTCTTGTGTGCGCCCGTGTGTTGTGGATACATGT
GGACTAATTTCTCCAACTCTCTTCTGTTACCGCTTTCCTCTCCACTGCAA
AATAGGTGGGTGAACACTGTTCTTCTGAAAGAAGTGTTTTCCGGCGGAGG
AGGCATCTCTCGGACAACGGCGCACAGCTGGATCTGCAGACTCGGCTTCA
GGTGGAAGAAGAGCGGGAAGTGCGTCTACGTCGATGGCCACAACCGCCCG
GATGTCGTCGAGGCCCGGCGGGAGTACGTGGCGAAGATGCTCATCCTGCG
AAAGATGATGTCCATGTGA

Coding sequence (CDS) from alignment at Scaffold_420:428..3396-

>EsuBft1040_8a-0001 ID=EsuBft1040_8a-0001|Name=EsuBft1040_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1947bp|location=Sequence derived from alignment at Scaffold_420:428..3396- (Ectocarpus subulatus male Bft15b)
ATGGGTCGCCCAAAGGGTAAGCGCAAGCTGCCAAGGAACGCCGACGGCAC
GATTCGGAAGGCCCCTTCGCCCCCTGCGGACCCTGCTGTAGGCAACGACT
CTCCTCCCTCTTCCGACCATGAAGGCGCCAATATTTCTCCCATGCACACC
AACGACCACGACGACGACTGGCGCGATGAGGATGCGGGTGGCGAGCCAGG
TCGCGGGCAGGCGAAACTGCCGTTCGGTTCTGCGGTTCGCTCTGCAGCGA
GCGCTGCGGTGTCTGCAGCAGCTCGCACAGCAATGGCGGTGGCGCCCGAA
GTCGCGCCGCCTGCGCGAAAAAACGCGGTGCAACCTCTCCACCGGTCGAC
GCAGCATCGCCACAGGCGAGCGCGGTGGAGCAAGGAGGACGCCGGGATGG
CGGGGAGCTTGGCAGCATGGCTGAAGCCCCCAGCTCAGCAGCAGGAAGGG
CAGCATGGTTCGCCTCAAATTATGGAGACTGAAGGTGCGGTGGAGATGGA
TGTTGAGGTGGGAGATGTTGGTGCGGACAGCAGTGATCATGATGCCGAGA
AGATCTGCAGCCCGCAAGAAGAACATGACCGCACCAGCCGTGGCGACAGC
AGCGAGAGCGAGACCGACATGCTGGTATGTTCGGGTGTTGGTGTTCCGCT
GGAAGATTGGTTTGGTGAGGATGACCAGGCTAGAGCTGCGAAGCTTCTTA
ATTCCAGCGGCGAGGACAGTTTTCTCGACGCACTAGACGCAAGCCGCGAC
CGCTCTCGCGGCCCCGGCGAACTTGACGGAGAGAGCGGCGACAAGGCTGA
TGATGATGTTCAGCCTCAGGACACCGGCGAAGCAGAAGCTGTGGGAGACA
CCGGCGAAACAGCAGCTGTGGGAGGAGCCGGGCACGCAGCCTCTAGCGGA
ACAAGTGGCGAGACCGTCCGAGAAAGTTCGAGGACGAACCTTTTGGACGG
GCTGTACGCCGACCCCGCCCGCGCACGAGACGAGACATGCGGCCGATGCA
GTGGGCCTGGGCGAGGAACACGGGTGGCGTCGGGGGATGGAGCCAAGGGG
AGGTTTGCGGGGTTGAACAAAAAACGATTGAAGCACAGAAGGCGCGAGGA
GAGGAAGAAGACACCGGAACAACGAGCGCGAGAGCGAGAAGCGCGAGAGC
GAGCGCGAGAGCGAACGCGAGAGCGAGCACTCAAAGCGCAGAGAAGGCGG
GAGAACACGCCGCGAGAGAAGGAGCTCTTGGACATCTACCAGAAAGTGGT
GGACGCTATCGACAAGGCGGAGCAGTCCAACAGCTACAGCGGTATTGTGG
AGGACCCGACGGAAATGCTGACGGAATCTCGTCTCCCGTCCATCATGTGT
ACCGCCTTGGCGATTCGGGCGTACGCTGTCCTCGAGGAAGTGGAAACGCC
CAAGAAGCGCCGTGTGCTTGCTGCTTGCACTGCTGCATTTCTGCTCTTTG
AGATCGCCCTTGCCCTCTGGATTGAGGAAGGTGTCAACAAGATGCGGCAC
AGCCGCTACGTCGGAGATGTGGTGAAAACCACAGCGCAGACGGTGCGCAA
GTGGGTAAAGGAGTTCTGCCAAGACGGAAAATTTCTCATCAGAAAACGAC
TTTACGAGATAAGCCAGGCGGACTCCTTCATCGACCATGAGGACATCGCC
GAGCGTTGCCGGGAGGAAATCGACCGGCGGCTTTACCGCCGGAAGAAAAC
GGATCCGCGGTTTCGTGTCTCGGACTTTCAGAGGTGGGTGAACACTGTTC
TTCTGAAAGAAGTGTTTTCCGGCGGAGGAGGCATCTCTCGGACAACGGCG
CACAGCTGGATCTGCAGACTCGGCTTCAGGTGGAAGAAGAGCGGGAAGTG
CGTCTACGTCGATGGCCACAACCGCCCGGATGTCGTCGAGGCCCGGCGGG
AGTACGTGGCGAAGATGCTCATCCTGCGAAAGATGATGTCCATGTGA