Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G711 |
| ProteomeId | EsuBft103_8 |
| Protein domains | SSF51735 |
| Protein domains | PF13460 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SignalP-TM |
| Protein domains | IPR016040 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | PTHR12126 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | Uncharacterized protein At1g32220. chloroplastic OS:Arabidopsis thaliana GN:At1g32220 PE:2 SV:1 [Automatic annotation] |
| Nb exon | 7 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1218 |
| Hectar predicted targeting category | chloroplast |
| Evalue | 6.3e-229 |
| EggNOG OGs | COG0702@1|root,KOG4288@2759|Eukaryota |
| Ec32 ortholog description | NAD(P)-binding domain |
| Ec32 ortholog | Ec-01_011500.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | ubiquinone-6 biosynthetic process |
| COG category | GM |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0010287 |
| GO | 0006979 |
| GO | 0016168 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft103_8a-0001 ID=EsuBft103_8a-0001|Name=EsuBft103_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1218bp|location=Sequence derived from alignment at Scaffold_344:73676..79432+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TAGCGCTGTCACCCGGCACCCGCTCTCCGCTGCCGCTGCTCTTTTGCATA
TACACACCCGCTTGCCTGCACCATGCTGCGCCTTACCGTCCTAGCAGCCT
TCATGGCGGGTTGCAGCTCGTTCCTAGTCCCACCTGTGTTGCTGCGACCG
CCGATCATGGAAACCAGCAAAGGAGCACTGCACATGACGCAGAACAACGA
CGACATGGCCGACTCGGACTACTCTGGGTTGTCTGCTGGACCCTTCGACA
GGCGCACCCTCCTGACGGCTATTCCCGCGACTGTTGTGGCAGGGGTTCTT
GGCGTGGCAGTGGCGGGTTCGGCACCAGAGAAAGCACTGGCGAGAGCTAC
GCCGAAGGCCGCGCCGGCCGGGACGAACGTCGTGGTTCTCGGCGGCAACG
GTTTCGTTGGAAGCAAAGTCTGCGAACTTCTGGTCGAGGCCGGAGCAACC
GTCACAAGCGTGAGCCGTAGTGGCTCCAAGCCCGACAAGTGGGCAGCAGG
GCAGAGCTGGATGGACAAAGTGTCGTGGACGAAGGGAGACCCGACAGCCG
GGGACCTATCTGCCGTCTTCAGCAAGGCGGCGGCAGTGATATCGTGCGTA
GGGGTGATCGGGGGAAGCGACGAAGAGATGGAAAAGGGAAACGGAGATGT
CAACGTCCAAGCTGCAAAGCAGGCAGCGAGTGGGAAAGCCGGGCGCTTTG
TGTACGTGTCTGTGTCGCACCTGGTGCCGGAGGCTTTCGGGGGGGCTGCT
TTCAAAGGGTACTTCGACGGTAAGAGTCGCGCGGAGGAGGCCATCGCCAA
GTCCTTCCCGTCTACCGGAGTTCTGATCAAGCCAACCTTCATCTACGGCG
GGGAATCGTTCGGCCTAACCCCCCCTAGGGTTTCGGACGGCTACGGGTCA
GGGATAGACGCCCTCCTTTCCTCCGGCCCCATTCGAGCTATCGCCGGCGT
CGCCCCGGGCCTCATCAAGGTTGCGCTTTCGCCACCGGTATCGAGGGACA
ACGTCGCGCTAGCCTGCGTTGCTGGGGCGTTGGGGCGGCTACAAGGGACG
AACTTCGACGGAGCGGACGAGATCAACGCAGCGGCATCGAAGGCGTGATT
ACTTTTCTCGCGTGAAGGCCATCGCCGCCGACAGCATGACCGAATACGAT
CTGCCCGTGGAAAATATGCTAGCAAGTTCACTCAGAGAGAGAGAAAAGGT
CCCCGCAGTTTTCTGATT back to topprotein sequence of EsuBft103_8a-0001 >EsuBft103_8 ID=EsuBft103_8|Name=EsuBft103_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=341bp
MLRLTVLAAFMAGCSSFLVPPVLLRPPIMETSKGALHMTQNNDDMADSDY
SGLSAGPFDRRTLLTAIPATVVAGVLGVAVAGSAPEKALARATPKAAPAG
TNVVVLGGNGFVGSKVCELLVEAGATVTSVSRSGSKPDKWAAGQSWMDKV
SWTKGDPTAGDLSAVFSKAAAVISCVGVIGGSDEEMEKGNGDVNVQAAKQ
AASGKAGRFVYVSVSHLVPEAFGGAAFKGYFDGKSRAEEAIAKSFPSTGV
LIKPTFIYGGESFGLTPPRVSDGYGSGIDALLSSGPIRAIAGVAPGLIKV
ALSPPVSRDNVALACVAGALGRLQGTNFDGADEINAAASKA back to topmRNA from alignment at Scaffold_344:73676..79432+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft103_8a-0001 ID=EsuBft103_8a-0001|Name=EsuBft103_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5757bp|location=Sequence derived from alignment at Scaffold_344:73676..79432+ (Ectocarpus subulatus male Bft15b)
TAGCGCTGTCACCCGGCACCCGCTCTCCGCTGCCGCTGCTCTTTTGCATA
TACACACCCGCTTGCCTGCACCATGCTGCGCCTTACCGTCCTAGCAGCCT
TCATGGCGGGTTGCAGCTCGTTCCTAGTCCCACCTGTGTTGCTGCGACCG
CCGATCATGGAAACCAGCAAAGGAGCACTGCACATGACGCAGAACAACGA
CGACATGGCCGACTCGGACTACTCTGGGTTGTCTGCTGGACCCTTCGACA
GGCGCACCCTCCTGACGGCTATTCCCGCGACTGTTGTGGCAGGTGTGTAT
ATGTATGCGTATGACCAGCCCCGTGAAAAGAGGAGTTGTGGGTTTAATTG
TTGGCAATAGCACCGGCAACAACACCCGAGCTTGCTCGCTCATGTTTTTG
CGACTTCGGCGCGTGTCGCCGCTGTGCACTCGCAAGTGTATGCCACGCTA
TCCTTGGCTGTATCGCCATCGGGCCCATCCATCATCGACAGGAATGTTGT
TGTCGCTCTGCACGCGTGCTACTTTTTCGCAGCGTGCAATTGCCGGGTGT
TTGGCGAAGATCCACCATGCGGCGTAACTTTGGTCCTTTCTCTCTCTCTC
GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TTTCTCTCTCTCTCCGCTCTCTATCGCTCTGTTTTCCCACAGCCTGTCCA
AAGAAATCTGTGTGCTGTCAAGTCTCTCGCTTGTCTAGAGGATAGGCATG
CAGCAGTACTTCTGTGTGCGAGGGCACACATGCTTTTTCCTCGTCAATCC
ATACGCATTTTCCCTTAGAAGGGAAAATCCTTATGTTCTTCACAACTCGG
TAACCTTCGAGTACACCACGTTGGGTGAGAGGTAACTTGTAGGTAGGTAG
CCCGATGACCTACCGTAAACGACACAAGATATCACACCCCCTGGACCGAT
TCAAGGCTCAATTTCTCAACAGCAGAAAGAGCGGGGGTGTCGAAAAGGGC
GGCGTTGAAACCGTCTCGCCGAGCTTTCCGAAAATGTATCGTTTCGTTTA
TGCATCCTCTTCGTCGTGGCGTAATCGAGCTATGAAAATCGCTCGAGGGG
GTATGTTTACTCGTGTCGTATACGGTTAGGGGTGTCAATCGGGCAAATTT
TGGAGCCAAAAATGTGACCGGTCAATTCAGCGATTTTTTGGGGGGGCACA
CGGATTGGGTTCTTTGTCGGCTCTTGAGAGTGCCCGCCTATTATACTGAT
TAAATACTACACTCAGTTTGTTTGTGCAGGTAGTTCTGCGCCCAGGCAGC
AGCGTGGCTCTTCATACGTTACACACACCTGGACACAAGTCCAATAGAGG
CGACTGTAAGCTCGGTTTTCTCTTAAAGTCAAAGGGCGGACGAACAACAC
CAAAAACATGTTTTTTTGAGCTTTTTGCTCCACGCCCAAGGTGACCTTTG
CTCCTCTCGAAAAAGCGAGCTTACAGCCCTCTACCTTGGGTTTACAGCTA
TACCACACAACAAACCGCATCCCAATCGCATCAGCCAACCACGAGATCTA
CATGTCTGAAAACGGCCCCTCCAGTGGGGCTGCACCGCCCACACCAGCAG
ACCCTCCCAAAACTTGCTAGAGTTGGAGATGGAATAGTTTTTTGTGGTGG
TTGCACAAAAGCACCTGCAGTAGGCTCGTGCGTCTGTTACAGAAGAGCGG
GGGGCGGTCCATCATCACCAGCTAGAGAGAGGGGTGGTATTCATCATCAT
TCGCTAGAGGGGGGGGTGGTGTCCANATTTAGGGCGCGCAGACAGACAGC
CATCGCGTAATTTTCACGCCCCTGTGCATGAAAATTGTNCCGCCCACACC
AGCAGACCCTCCCAAAACTTGCTAGAGTTGGAGATGGAATAGTTTTTTGT
GGTGGTTGCACAAAAGCACCTGCAGTAGGCTCGTGCGTCTGTTACAGAAG
AGCGGGGGGCGGTCCATCATCACCAGCTAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTAGCGGTTGGGACAGCTCGGGCAAAATGTTACTTGTTGTG
CGCAAGTTTTAGTTTGCAATTTGGTGCCGAGATGGTGAAATGGGCTCGAG
TCTGCTGGTATTTAGGGCGCGCAGACAGACAGCCATCGCGTAATTTTCAC
GCCCCTGTGCATGAAAATTGTTATTTTTCTCGTGTGCACATACTCCACAC
ACGATCCCTCTCAACTTCTTTTTTTTTGCAAAACAAAAAGCGTACCCCTA
ACGGGCCACACTTTTCGCAAAAAAAAAAAACTATTAAAAAATCGAGGTCC
GCACCGTTCGGCAGCAGGAGGCGCGCTGCGCGAAAGCTGAATCAAAACAA
AACGAAGTTAAAAGAGAGGACGGGGCAGTGTATGGTTGCCGCGTCAGCAG
AAGATAACACGCGGCGCGCTATCGAACGCGGCAGCCTCACCGTCGTAGAT
AGAACGCTGGAGGAAACGAAGGAGGAGTTGTTCAAAAGTTAGAAAATTGT
GGAAGAGAGCCAGGCTAGCTGCAGCATGGCGATGGAGTTCGCGCGCGAGA
AAGACGAGGAGCTCAAGTGGGAGCGGGCACGGCGGCGGCAGGTGTCTGCG
TGGCTTCACCGCCCGGCTGCTGCTCGGGTGTGTCATGAGGCATGTGTTCT
AGAGTGGGACCGCGCAAAGGTGTTGTGTTGTGTCCCACAGCAGGACACAT
CAGAGGACACACACGAGCGGCGCCCTCGCGCGTGCGCGTCAGGTGTTTTT
AGGGAGCTTTCGGACCGTTCCGTGCAATTTTATTGGTCAGTCGATTTTCC
ATCAGGAAGATCCGAGGTCACTTTTTCAATTCTTTTCCTATGGGAAATTT
GCTGCTTTGACACCCCTACCGGTACGAACACCGGGCGTAGCCTTGGTAGA
TGTACGGCATATCCACTGTGCTACAAGTCAGCGCTGGCCGTAGCATAGTG
AATATGCTGTACAGAAAACTGCAGCCGCTACCTTCCTAGAGATTGCTTGA
GTTATGCCGCCCGCAGCAGTGCATTCTGCAACCAATGCCATGGGGTCTCC
AGTGTTGCGCAAACTGTTTCTGTCACCTCAAGAATGTGAGCTTGGTGCCA
AACGATCAAGACTGCGAAAAGCACGAACAACACTACCAGTACCAGCCATC
ACACCTGTGGATTGACGCAAGTACTCCTCAGACCTTTCGCCAAGGGCACC
ATATGACGTTAGGCTGCCCACAATGGTGGCACGCAACGGTTACCCATGCG
CGTCTGCGTACAGGGGTTCTTGGCGTGGCAGTGGCGGGTTCGGCACCAGA
GAAAGCACTGGCGAGAGCTACGCCGAAGGCCGCGCCGGCCGGGACGAACG
TCGTGGTTCTCGGCGGCAACGGTTTCGTTGGAAGGTAAGTCATTGGGCAC
AGTCATGAGGATTTACTCGTCATGAAGGTGCTTGTGGCACTGTACTGCGG
TGGTGCGGTGTCTGCTGCTTGTGGCCCAATTCATGCTCTCCATTTAAACT
GCCTTGTTTGTTTGTTCGGCGGCGATGCACTGGGCTCTCGTGCGAACAAC
GACGAACACGACTTCCAACACCTACAGCAAAGTCTGCGAACTTCTGGTCG
AGGCCGGTGAGAGATTTTCCGCTGATGAGTTCGGGTTTTGAATCGTGGTG
GGGGCATGTTCGGGAGAGATATCAGAGCTCGAGGATGACATGATTTGATT
ATGGTAGGGCTTCCTCGACAGAACGAGCGACTGTGTAAAGTCACGCCTCA
TCACTTTTCTATCCTTCTCGGGGGTTTTGCTTGGTGCCTTCGTATGCCCC
CTGCCGATAGATTACACGGAGTTCATTTGTCGACACTTTCGCCGGGGTTG
TGCACAAACGCAGTCGGTGACCGTAGAATGGATGACTGGGTCCGCGAAAT
GTTGTGGTCGTCCCTAAGGCAATCTTGGGTGTGAGAATATGTAGCCACAG
GGGCGGTGGCACCATTGCGACCTGCTATACCCCCCCCCTCGTCCTGACAC
AGAAAATGTTTTACTGCCCTCGCCGTGCTTGGACAATGTGGCACATTACG
TGTTTGGCAGGAGCAACCGTCACAAGCGTGAGCCGTAGTGGCTCCAAGCC
CGACAAGTGGGCAGCAGGGCAGAGCTGGATGGACAAAGTGTCGTGGACGA
AGGGAGACCCGACAGCCGGGGACCTATCTGCCGTCTTCAGCAAGGTAAGG
AAAGGAAGCACGGCCTAACACCTTCCTCTCTTCCCCCTGCCAAGCTTTGT
TACCCTCGGCGCAAGCCTGACCTAAACACCTCATCCCGCTCGCGCTGTGC
TCCGTGTCCTTGGTGCGTCATACTATTTCATTGCGTTGTGTTGTCGACAA
GGCGGCGGCAGTGATATCGTGCGTAGGGGTGATCGGGGGAAGCGACGAAG
AGATGGAAAAGGGAAACGGAGATGTCAACGTCCAAGCTGCAAAGCAGGCA
GCGAGTGGGAAAGCCGGGCGCTTTGTGTACGTGTCTGTGTCGCACCTGGT
GCCGGAGGCTTTCGGGGGGGCTGCTTTCAAAGGGTGAGCGCTCCTTGTCC
CTGTCACGCCAGATATCACCAACGCGTTGATGTACGCCTGACAATGTGTG
CGTGAGGGAGAAGGATTTTTCCGTAGGTGGTCTAGCGTTTCAACAAGGTT
CGAGAACGGCCATTGTTGTCGACCAGCACCCACCTCAAAGAGGTAACCTT
GGCAACCTGAGAAACAAGTTGCCTTACCACAGTTCCGGCGTGTTGATCAA
CACTTGAGAACAACCCTTACCATCTTTCTGGCTCGCTTGGGTGATGTTCT
TCCTTGTTTTTGTCCTCGCTACAACGCACGTACGTGTTCGAGCACGCGGT
CTCGATTGTCGTGTCAGATGTTATTACATGCGTGCGTCTCCGACACTTGA
TCGCCATGTACGCATCACAGGTACTTCGACGGTAAGAGTCGCGCGGAGGA
GGCCATCGCCAAGTCCTTCCCGTCTACCGGAGTTCTGATCAAGCCAACCT
TCATCTACGGCGGGGAATCGTTCGGCCTAACCCCCCCTAGGGTTTCGGAC
GGCTACGGGTCAGGGATAGACGCCCTCCTTTCCTCCGGCCCCATTCGAGC
TATCGCCGGCGTCGCCCCGGGCCTCATCAAGGTGCGAGGGGTGCCACATT
GGCTCGGTATTGATTGCGTTTGGCATCTTGTTTTCCTCCCCCATCTTTCC
TCATGCACGTTCCTCGTTCCTCGTGCTTGGTGTTTGTCGGGAGGCCTTCT
GTGCCTGGATGGAGTAGTCGCGATTGTTGCTGCGGGATGTGCCCTTGATG
GAGGGGAGTAGCTGCTCGCGTTGTTTCTGTGGATCTGTCACGAGCGACGA
CAATGGCCATCATTGCGACTGCATGCCAAGTGCTGAGGTTCTGATGGAGT
ACTTACCCGTTGCTCCTGGCGCTCAAGCATCGCTGTGGATTCGCCCGGTC
GTTTGGCTTTGTTTTTTCACTTTTTTCTTGCCTTGTTGGAACTGCAAACT
TGCTTCAGGTTGCGCTTTCGCCACCGGTATCGAGGGACAACGTCGCGCTA
GCCTGCGTTGCTGGGGCGTTGGGGCGGCTACAAGGGACGAACTTCGACGG
AGCGGACGAGATCAACGCAGCGGCATCGAAGGCGTGATTACTTTTCTCGC
GTGAAGGCCATCGCCGCCGACAGCATGACCGAATACGATCTGCCCGTGGA
AAATATGCTAGCAAGTTCACTCAGAGAGAGAGAAAAGGTCCCCGCAGTTT
TCTGATT back to topCoding sequence (CDS) from alignment at Scaffold_344:73676..79432+ >EsuBft103_8a-0001 ID=EsuBft103_8a-0001|Name=EsuBft103_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1026bp|location=Sequence derived from alignment at Scaffold_344:73676..79432+ (Ectocarpus subulatus male Bft15b)
ATGCTGCGCCTTACCGTCCTAGCAGCCTTCATGGCGGGTTGCAGCTCGTT
CCTAGTCCCACCTGTGTTGCTGCGACCGCCGATCATGGAAACCAGCAAAG
GAGCACTGCACATGACGCAGAACAACGACGACATGGCCGACTCGGACTAC
TCTGGGTTGTCTGCTGGACCCTTCGACAGGCGCACCCTCCTGACGGCTAT
TCCCGCGACTGTTGTGGCAGGGGTTCTTGGCGTGGCAGTGGCGGGTTCGG
CACCAGAGAAAGCACTGGCGAGAGCTACGCCGAAGGCCGCGCCGGCCGGG
ACGAACGTCGTGGTTCTCGGCGGCAACGGTTTCGTTGGAAGCAAAGTCTG
CGAACTTCTGGTCGAGGCCGGAGCAACCGTCACAAGCGTGAGCCGTAGTG
GCTCCAAGCCCGACAAGTGGGCAGCAGGGCAGAGCTGGATGGACAAAGTG
TCGTGGACGAAGGGAGACCCGACAGCCGGGGACCTATCTGCCGTCTTCAG
CAAGGCGGCGGCAGTGATATCGTGCGTAGGGGTGATCGGGGGAAGCGACG
AAGAGATGGAAAAGGGAAACGGAGATGTCAACGTCCAAGCTGCAAAGCAG
GCAGCGAGTGGGAAAGCCGGGCGCTTTGTGTACGTGTCTGTGTCGCACCT
GGTGCCGGAGGCTTTCGGGGGGGCTGCTTTCAAAGGGTACTTCGACGGTA
AGAGTCGCGCGGAGGAGGCCATCGCCAAGTCCTTCCCGTCTACCGGAGTT
CTGATCAAGCCAACCTTCATCTACGGCGGGGAATCGTTCGGCCTAACCCC
CCCTAGGGTTTCGGACGGCTACGGGTCAGGGATAGACGCCCTCCTTTCCT
CCGGCCCCATTCGAGCTATCGCCGGCGTCGCCCCGGGCCTCATCAAGGTT
GCGCTTTCGCCACCGGTATCGAGGGACAACGTCGCGCTAGCCTGCGTTGC
TGGGGCGTTGGGGCGGCTACAAGGGACGAACTTCGACGGAGCGGACGAGA
TCAACGCAGCGGCATCGAAGGCGTGA back to top
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