EsuBft103_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_7a-0001
Unique NameEsuBft103_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:70437..73031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog130081.XP_005704116.1
ProteomeIdEsuBft103_7
Protein domainsIPR009400
Ownerapollo_admin@sb-roscoff.fr
Noterna polymerase ii transcription factor b subunit 5 os:ustilago maydis (strain 521 fgsc 9021) gn:tfb5 pe:3 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1038
Hectar predicted targeting categoryother localisation
Evalue2.8e-09
EggNOG OGsKOG3451@1|root,KOG3451@2759|Eukaryota
Ec32 ortholog descriptionTFIIH subunit TTDA/Tfb5
Ec32 orthologEc-01_011510.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameGTF2H5
KEGG rclassRC00037,RC00094
KEGG koko:K10845,ko:K11663,ko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,ko03022,ko03420,map00565,map01100,map03022,map03420
KEGG ModuleM00290
GOsGO:0000182,GO:0000428,GO:0000439,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006362,GO:0006363,GO:0006364,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009987,GO:0010212,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0022613,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036211,GO:0036260,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070816,GO:0070911,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0104004,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990837,GO:2000112,GO:2001141
Descriptionnucleotide-excision repair
COG categoryEG
BRITEko00000,ko00001,ko00002,ko03021,ko03036,ko03400,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0006364
GO0006362
GO0005829
GO0006294
GO0000439
GO0000182
GO0000990
GO0005675
GO0070816
GO0005730
GO0071480
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_7aEsuBft103_7aEctocarpus subulatus male Bft15bgeneScaffold_344 70437..73031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_7a-0001EsuBft103_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 70479..72248 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_7a-0001-exonagat-exon-345Ectocarpus subulatus male Bft15bexonScaffold_344 70437..70522 +
EsuBft103_7a-0001-exonEsuBft103_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 71718..71831 +
EsuBft103_7a-0001-exonagat-exon-346Ectocarpus subulatus male Bft15bexonScaffold_344 72194..73031 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_7a-0001-exonagat-five_prime_utr-246Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 70437..70478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_7a-0001-cdsEsuBft103_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 70479..70522 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_7a-0001-exonagat-three_prime_utr-397Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 72249..73031 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_7a-0001 ID=EsuBft103_7a-0001|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1038bp|location=Sequence derived from alignment at Scaffold_344:70437..73031+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGATCCGACCACTAGCACACAGCACGCTGCCGCGTTGTGCGATGAGCAC
AGGATACCGGAGCAGCAAGGGCGTTCTCATCACCTGCGATGTGCCCACGA
AGCAGTTCATTATGAGCCTGGACGCACGGCTGGCGTGCGTGGTGTCGGAT
CTGGACGCCACACATGTCTTCGTCAAGAAAGACAGCGTCAAAGAGATACA
GCGCGAGCTGGAGCAGCTACACGAGAAAAACGTTTACGTGCGGCCTCGAA
CATAGCAACAACGGCGGTGCACAGCAGTGCGCAACAGCGTCGGAAGACGG
CACCGGCACAATGGCTACAGGACCGTTGTGCTCTCCACGCGGACGTTTCA
TTTCGCATGGCAAATTGCAGGGAAACTGGCGAAGAGAGGGGCGGTTTTGA
TTTTTTTTTTGTGGGAGCAACCAGTGTTCAAGAGACGGTAGAAATCGTGC
AGCTTTATTGAGAGGGAGGTTCGCGATATCTACTGTGATTGCACCGTCTG
GGTGATCGCCAGTAGTATTATCACACGCTTCATTGATGGTACATGGCCTT
CTCGTACAGCGACAAGGGTGTCTCAATCCTCCACAACACGGATCTCCACA
CCACATTCATGGTCACGATGGGTGTGAGATGCTGCATGCGCTTGGTCATG
GTCCTTTTGATTGTACGCTAAACCAATGTCATTCTTCGACGAGGTAGCAC
CACGTTAACACGGCACGGCGATTGCAAACTCGTCAAACTGATGCATAGCT
TGTCCAGCGACACACTAATAGCAAAAGCCTCCGTCTAACAATGGTTGAAA
GGGAAGTCAAGACCCCAGGTGCTCTTCAAGCATGACTACGGTGGGAGGTG
AACAATCCTTGCACCGCACCAAGCACGTGATACGCGCCAACACACGGACG
ACGAGTCGTGGGCGCACACAAGAATACATGGCCTTGACTAACCACTGCGC
CCTGGCAACAATTCACCCGTATGCAGCGTCGTGCCTAGTTTATTTATATC
CACACGAGCTTTTGTCATTTCTACTGCAACATGCCGAA
back to top

protein sequence of EsuBft103_7a-0001

>EsuBft103_7 ID=EsuBft103_7|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVK
EIQRELEQLHEKNVYVRPRT
back to top

mRNA from alignment at Scaffold_344:70437..73031+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_7a-0001 ID=EsuBft103_7a-0001|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2595bp|location=Sequence derived from alignment at Scaffold_344:70437..73031+ (Ectocarpus subulatus male Bft15b)
ACGATCCGACCACTAGCACACAGCACGCTGCCGCGTTGTGCGATGAGCAC
AGGATACCGGAGCAGCAAGGGCGTTCTCATCACCTGGTACGGTACGGAAT
GGGAACGGGTCTGTTACATGCCCTAAGTCGAAGCCTACCGCAATCGTTAG
CAGCTTTGTCAAGTGTCAAAAGTGCGTCGGTCACCGAGTAGGGTCGACTT
AATGTACTGCCGCACACTGCTGTAGACGCTAGACAGCAGTGCCCAAACGG
TCTAGTGCGCTAGAATACTGCTAGATCAAACGCGTTTTTCTTTCATAGGT
AGCTCTATTCACCGTACTGCCATTGTGACGTTCCTGACGCTGGTTCACCC
GTTTTTTGCTTAAGATACCACCCCCCTCGAACCGATTTACTTTTATCAAG
TACACATTGCAGCGCCACGGCCACATTCAGCAGCGACGTTGCCGGAAAAG
GCAACTTGGGCGCCGTATCGTCGAGAGCATTCCCAAATGTCCCATTTGAT
GGTGGCATCCTGTTCGTCGTGGAGTAGTCGAGCTTTGGAAATTTGTCACG
GTGTTGCATCTTACAACCTACATACGGTAGAGAAAGATGGAAGCTTGAAA
CCATGCGCGCCAGTGTTGCGGCCTACGTACTACATGCAGGAAGTGCAAAG
CGGTGGTTTCGTGAAGGCGTGTATTTATGCATGCGTGTGAAGCCAACAGG
TCGAAAATTTGCTTGACTCCTCATAGAGGTGCACATGCAAAGCAGCGGAG
CATATTGCATTTGGCGGTCTTCGGGTACAGGCACAGCAGTGATGATGACA
TTTCAGAAATGGGTTTCCCTTCCACGGTGACAAACAATTCGCTTTGGCAC
CTCTAGGGGGAACGCGCCGCCTACAATAACAGGGCCCAGAACATGTCGAT
GGGGTTGATCTATTTCATCGATCTCGGTTGCCTTGTCCTCATTCATGTCG
TCGCTGTTGTGCTGAGCATCGCGCGAACACGTGATGTTTCACTTGCCGCT
GCAAACTTTGCTTGATGTAGCTTTACGCGGAATCAAGGGAGATGAACACC
ATTTTTGTCTTTTTTCGAATAAGGTCCCGAAATCGCTTTGGTTCAGTCGT
CGCCGCTCGATATCGCTGTTATGACTGGTATTTTTTCCCCGCCTCCGCCC
CTTCCTACCTAAGGTTGTCCCTCGTTTTGTCGTTCATGATGGGTGTTCTG
ATACAAAAACGATGGCTGTGTGAACTTGAACCTTTTTCTTTGCAGTTTAT
TACCGCCGTATTTGTTCCCTGTTGTATCCAGCGATGTGCCCACGAAGCAG
TTCATTATGAGCCTGGACGCACGGCTGGCGTGCGTGGTGTCGGATCTGGA
CGCCACACATGTCTTCGTCAAGAAAGACAGCGTCAAAGAGATACAGTGAG
TGCTATCTGCCCACCTGATTTCTGTGCACGTATGGCAGGAACCGCCTAGG
AGAATGCGCGTGTGTCGAGCTAGAATTATGCGAGGCTCTCGGAGTTGATT
CAGTTCTATGTGTACTTTGCGTAATGTTTTCACGACAGTGATGCCGATGT
CACCGGCTGTTCCACATTGTGTTGGCTGTCCTCCCCATCTTGTCCGGAAG
TATTACTCGACAATGTTGATTTGGGGACGTGTTGATGGCGGAGGTGTGGA
GGTGAGGGAAGGGCGAAAGGACCACATCCGGCCGCCGTGATACTCGCTTC
GGGTGTACCTAGGCACCAACGAACGTTTTACACATGCCATGCTTCATCCC
TTTCCAGGCGCGAGCTGGAGCAGCTACACGAGAAAAACGTTTACGTGCGG
CCTCGAACATAGCAACAACGGCGGTGCACAGCAGTGCGCAACAGCGTCGG
AAGACGGCACCGGCACAATGGCTACAGGACCGTTGTGCTCTCCACGCGGA
CGTTTCATTTCGCATGGCAAATTGCAGGGAAACTGGCGAAGAGAGGGGCG
GTTTTGATTTTTTTTTTGTGGGAGCAACCAGTGTTCAAGAGACGGTAGAA
ATCGTGCAGCTTTATTGAGAGGGAGGTTCGCGATATCTACTGTGATTGCA
CCGTCTGGGTGATCGCCAGTAGTATTATCACACGCTTCATTGATGGTACA
TGGCCTTCTCGTACAGCGACAAGGGTGTCTCAATCCTCCACAACACGGAT
CTCCACACCACATTCATGGTCACGATGGGTGTGAGATGCTGCATGCGCTT
GGTCATGGTCCTTTTGATTGTACGCTAAACCAATGTCATTCTTCGACGAG
GTAGCACCACGTTAACACGGCACGGCGATTGCAAACTCGTCAAACTGATG
CATAGCTTGTCCAGCGACACACTAATAGCAAAAGCCTCCGTCTAACAATG
GTTGAAAGGGAAGTCAAGACCCCAGGTGCTCTTCAAGCATGACTACGGTG
GGAGGTGAACAATCCTTGCACCGCACCAAGCACGTGATACGCGCCAACAC
ACGGACGACGAGTCGTGGGCGCACACAAGAATACATGGCCTTGACTAACC
ACTGCGCCCTGGCAACAATTCACCCGTATGCAGCGTCGTGCCTAGTTTAT
TTATATCCACACGAGCTTTTGTCATTTCTACTGCAACATGCCGAA
back to top

Coding sequence (CDS) from alignment at Scaffold_344:70437..73031+

>EsuBft103_7a-0001 ID=EsuBft103_7a-0001|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=213bp|location=Sequence derived from alignment at Scaffold_344:70437..73031+ (Ectocarpus subulatus male Bft15b)
ATGAGCACAGGATACCGGAGCAGCAAGGGCGTTCTCATCACCTGCGATGT
GCCCACGAAGCAGTTCATTATGAGCCTGGACGCACGGCTGGCGTGCGTGG
TGTCGGATCTGGACGCCACACATGTCTTCGTCAAGAAAGACAGCGTCAAA
GAGATACAGCGCGAGCTGGAGCAGCTACACGAGAAAAACGTTTACGTGCG
GCCTCGAACATAG
back to top