Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G708 |
| ProteomeId | EsuBft103_3 |
| Protein domains | PF09335 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | TMhelix |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | PTHR12677 |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | tvp38 tmem64 family membrane protein slr0305 os:synechocystis (strain pcc 6803 kazusa) gn:slr0305 pe:3 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 947 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 2.75e-179 |
| EggNOG OGs | COG0398@1|root,KOG3140@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-01_011530.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | canonical Wnt signaling pathway involved in osteoblast differentiation |
| COG category | O |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft103_3a-0001 ID=EsuBft103_3a-0001|Name=EsuBft103_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=947bp|location=Sequence derived from alignment at Scaffold_344:42204..44693- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ACCTGGCTAGACGGTGAGAACATGCTCGCATTCATCGTGATATTCATCGT
CTTCGGGGCCCTGTCCATCGTCATGCTGCTGCCGCAAACGGTGCTCTTCC
TGGCGGCGGGCTACGCGTGTGCAGACCGCCTCCGTAACCAGTACCTGGCG
TTCGCCGTGGCGTTGAACCTGTCCCTGGTCACCTTCATCATCGGAGCATC
CATCGCCTTCCTGCTGGCCAGGAGTGTTCTACCGCCTTCGTGCACGCGCA
AGTTCTTCAAGCACTTCGCCATCCTCGAAGGCCTGGACCATGCTCTCCAG
CACAAAGGGCGCCGAATCATTTTCTTGTTGCGCATCAATCCCATGTCGCC
CTACAACGCGCTGAACTACGGGCTCGGTCTCAGCTCTTGCACGTTCCGAG
CTTACCTGCAGGGGATGGTGGGCGCGTTCCCTTTCACGTGCATCGCCGTG
TACGCCGGGATGCTCATTAGCAGCGTGGACGACATTGACTCGCTCTTCAC
CTACACGAGCACCGGTTGGTACTGCGTCTACGCGGCCCTGGGCGTGGCCT
GCGTCGTGTCCTTCGTGGCCATCGTCCGCTACACCTCGGCCGAGATGAAG
GCCGCCGTGCGCTCGGCGCCAAGACCCGCTGGTGGGGACAGGGTCGACGG
GGAGGAAGAGTTCGGGGAGCTTCCGCCGGACTCTACCATGTTCGGGACGT
TCACGTCTCGGTCGGAGTGTTACGGCGGCGAGGAGGGGCGCGGAGGAAAT
GCCGGTGCGGGAGGCGATGAGAAGGAAGAGGGGGAAGCGATGGAGACCTT
CGACGAGATTGTAGTTGCAAGAGCGCCGTTGTTAGGCGGGGACCCACGCC
GGAAAAACGGCGTCGCGGCGGAAAGAACGAGTAAGAGAGCTGCACGGTTA
TTTCCGGTTGTTGATGTTTGAGCGTAGAAAGAGCGGGGCTTGTCGAT back to topprotein sequence of EsuBft103_3a-0001 >EsuBft103_3 ID=EsuBft103_3|Name=EsuBft103_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=299bp
MLAFIVIFIVFGALSIVMLLPQTVLFLAAGYACADRLRNQYLAFAVALNL
SLVTFIIGASIAFLLARSVLPPSCTRKFFKHFAILEGLDHALQHKGRRII
FLLRINPMSPYNALNYGLGLSSCTFRAYLQGMVGAFPFTCIAVYAGMLIS
SVDDIDSLFTYTSTGWYCVYAALGVACVVSFVAIVRYTSAEMKAAVRSAP
RPAGGDRVDGEEEFGELPPDSTMFGTFTSRSECYGGEEGRGGNAGAGGDE
KEEGEAMETFDEIVVARAPLLGGDPRRKNGVAAERTSKRAARLFPVVDV back to topmRNA from alignment at Scaffold_344:42204..44693- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft103_3a-0001 ID=EsuBft103_3a-0001|Name=EsuBft103_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2490bp|location=Sequence derived from alignment at Scaffold_344:42204..44693- (Ectocarpus subulatus male Bft15b)
ACCTGGCTAGACGGTGAGAACATGCTCGCATTCATCGTGATATTCATCGT
CTTCGGGGCCCTGTCCATCGTCATGCTGCTGCCGCAAACGGTACGTGTAT
GGAGCCGTTTGTGTGTGTGCCGTCCCTGCGCTTGGGATGTTCTCTGTGAA
CCCCCGTTGTGATTTTTTTCTGATCCGAACGCGAGTGATCTGCATGCAAG
TCACGAGAGAGGAGTCTAGACGGTGGATGTACACAAGTGAATGTACTCGT
CTTTTGGAGTGTAGGTGCTGTGCTGTTCGTCCGCCCGTTTTGTTCCCACG
CTGATATCGACGTCTACAGCAGTGTTGCCTCATCTACGTGTCGGTTGTGA
AACTGTGTGCTCTTGTGTGCCTAAAACATTGTACGTGTCTCTCATGAGCT
TTACTTCAAGCACATACGTCGCGTGCCCTCAAACGTACATGGGAGAGAAG
TCGGTGTCGTTTCGCTGTTGCCCACCGACGCTGACACAGCTTACTTCGCA
CGCTAGGTTTATCTGCACTGAAGCTAGTGCGCTCGACCCTGGAGGTACTT
TTGATTTGTTGCACACGCATCCTCTTGTTGGCTTTGGCGTTTTGGTGAAT
CAAACCCCTCAATGACTTGCGGGGAGAACCGACATTGCCTCTCGCCCGTC
ATCTCGTCTTGTCTTTGTTCCGCATGGGGCGAAAAAATCCTCAACCGACA
GACTTAATGTGGAAGCACGTGTGGTTGGCGTGTCTGCGGGTCAACCACGA
TTCCGGAGCAAGGCTTGGAATTCCGACCGACGTCGTACTTGCGCAAGCAA
CTCAACCAAAACCAACCCCATTCTGACCGTGTGTTTGTTTTACAGGTGCT
CTTCCTGGCGGCGGGCTACGCGTGTGCAGACCGCCTCCGTAACCAGTACC
TGGCGTTCGCCGTGGCGTTGAACCTGTCCCTGGTCACCTTCATCATCGGA
GCATCCATCGCCTTCCTGCTGGCCAGGAGTGTTCTACCGCCTTCGTGCAC
GCGCAAGTTCTTCAAGCACTTCGCCATCCTCGAAGGTGATGAAGGAGGCG
CCGGCGCCGCGAATACATTTATTTTTTGCGTGTTGGGTGGTGGTGCTGCC
TCCCGGGCATGCCCATCTTCGGCCGGGTTCGGGCATTTGTTCCCGAGAGA
AATTCATTCCATCGATCGAAAGCGGAAGTTTTATTTTGATATAAGCACCG
CCGTGTTTTTCCCGCCACAACGGACGGATATCCGTCATGATAGTGATGCG
ATACGAATTTTGTGGTGTTTTGTGTGAACCATCGTCCCGAAACGCTTCGC
CGCAGCACTACACGGACACCCGAGCCATCGCTCGGAGAGGGATATCCGTA
CGTGTCTGGCCATGTGCGCGCACTATTTAATCTGCAGTGTCTTATCCTCT
CCCCTCCTCCGTGATACACCCCCTGCCACACGCTATATTCCTGTGTCGTA
TTATCACAGGCCTGGACCATGCTCTCCAGCACAAAGGGCGCCGAATCATT
TTCTTGTGAGTGGAAATGTATGCTGCGAAGTATTCGTTTCGAATTGGTCT
CAGCAGCAGTGTACAAAGTATGTGCGAGGGAGTATAATTTTTTCGCCGCT
TGCCCCGTCGGGGTACTGCGCCTGTTGGTTTGCTTCAACACCGCACGCGT
CCTCGGTTTCCTATGTGTTGACTTGCCTACCGAGCGATCAGGCCCTTGTT
GAGGCGCGGATGGTTTCGTCTCACACCACCTCGGAACAACCAAAGCCTGA
CCAACAATCTGGCCGAAGTCAACTAAGTTCACAAGAGTTTTTTTTTCCCG
GATTGAGCCCTTGCCTGTCCCGCGTCATCGAAACACCGCTTCGCCACCAC
CCCCGGCACGCGCCGCCAGGTTGCGCATCAATCCCATGTCGCCCTACAAC
GCGCTGAACTACGGGCTCGGTCTCAGCTCTTGCACGTTCCGAGCTTACCT
GCAGGGGATGGTGGGCGCGTTCCCTTTCACGTGCATCGCCGTGTACGCCG
GGATGCTCATTAGCAGCGTGGACGACATTGACTCGCTCTTCACCTACACG
AGCACCGGTTGGTACTGCGTCTACGCGGCCCTGGGCGTGGCCTGCGTCGT
GTCCTTCGTGGCCATCGTCCGCTACACCTCGGCCGAGATGAAGGCCGCCG
TGCGCTCGGCGCCAAGACCCGCTGGTGGGGACAGGGTCGACGGGGAGGAA
GAGTTCGGGGAGCTTCCGCCGGACTCTACCATGTTCGGGACGTTCACGTC
TCGGTCGGAGTGTTACGGCGGCGAGGAGGGGCGCGGAGGAAATGCCGGTG
CGGGAGGCGATGAGAAGGAAGAGGGGGAAGCGATGGAGACCTTCGACGAG
ATTGTAGTTGCAAGAGCGCCGTTGTTAGGCGGGGACCCACGCCGGAAAAA
CGGCGTCGCGGCGGAAAGAACGAGTAAGAGAGCTGCACGGTTATTTCCGG
TTGTTGATGTTTGAGCGTAGAAAGAGCGGGGCTTGTCGAT back to topCoding sequence (CDS) from alignment at Scaffold_344:42204..44693- >EsuBft103_3a-0001 ID=EsuBft103_3a-0001|Name=EsuBft103_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=900bp|location=Sequence derived from alignment at Scaffold_344:42204..44693- (Ectocarpus subulatus male Bft15b)
ATGCTCGCATTCATCGTGATATTCATCGTCTTCGGGGCCCTGTCCATCGT
CATGCTGCTGCCGCAAACGGTGCTCTTCCTGGCGGCGGGCTACGCGTGTG
CAGACCGCCTCCGTAACCAGTACCTGGCGTTCGCCGTGGCGTTGAACCTG
TCCCTGGTCACCTTCATCATCGGAGCATCCATCGCCTTCCTGCTGGCCAG
GAGTGTTCTACCGCCTTCGTGCACGCGCAAGTTCTTCAAGCACTTCGCCA
TCCTCGAAGGCCTGGACCATGCTCTCCAGCACAAAGGGCGCCGAATCATT
TTCTTGTTGCGCATCAATCCCATGTCGCCCTACAACGCGCTGAACTACGG
GCTCGGTCTCAGCTCTTGCACGTTCCGAGCTTACCTGCAGGGGATGGTGG
GCGCGTTCCCTTTCACGTGCATCGCCGTGTACGCCGGGATGCTCATTAGC
AGCGTGGACGACATTGACTCGCTCTTCACCTACACGAGCACCGGTTGGTA
CTGCGTCTACGCGGCCCTGGGCGTGGCCTGCGTCGTGTCCTTCGTGGCCA
TCGTCCGCTACACCTCGGCCGAGATGAAGGCCGCCGTGCGCTCGGCGCCA
AGACCCGCTGGTGGGGACAGGGTCGACGGGGAGGAAGAGTTCGGGGAGCT
TCCGCCGGACTCTACCATGTTCGGGACGTTCACGTCTCGGTCGGAGTGTT
ACGGCGGCGAGGAGGGGCGCGGAGGAAATGCCGGTGCGGGAGGCGATGAG
AAGGAAGAGGGGGAAGCGATGGAGACCTTCGACGAGATTGTAGTTGCAAG
AGCGCCGTTGTTAGGCGGGGACCCACGCCGGAAAAACGGCGTCGCGGCGG
AAAGAACGAGTAAGAGAGCTGCACGGTTATTTCCGGTTGTTGATGTTTGA back to top
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