Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LPL9 |
| ProteomeId | EsuBft103_25 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1360 |
| Hectar predicted targeting category | other localisation |
| Evalue | 7.17e-59 |
| EggNOG OGs | 2EUDG@1|root,2SWJG@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft103_25a-0001 ID=EsuBft103_25a-0001|Name=EsuBft103_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1360bp|location=Sequence derived from alignment at Scaffold_344:245171..254595+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCTGCTGACGCAGCCAGTACTCCAGTACATTCTTATATTCGCAGATTTCC
TCTGTATTACGCCTCAAGAACCAGCGGAAACCCATATACTCAGACCTCCT
CTGAGAGACACACCGCCACACGTCAAACACTAGCTACCAAACACGCCACA
GAGGTCGGGAGACCATACAACGATGGACAGGTTTGTAGTCTCCCCTGCCA
GCTCGCCGTCTGCTGCAGACCCCGGCAGTGGTGCTGATGATGCAGGGGGT
GGGACCGTAGTGTGCGCATCCACGAAGACACAGCCAGTGACGGCTCAGTC
GACCACGGAGGCAGAGTATATTGCAGCCGGGGAGTGCGTGAAGGAAGCGT
TGTTCGTGCGTGGTGTTCTGTCGTTCATTGCGCCCGAGACGAGCGGTGCC
ACGATCAGGGTCCGTGAGGACAACGAGGGGGCTCTCGCGTTGGTGCAGAA
CCCTTTCAGCTCGGCGGGGAGCAAGCATATCGACGTGCGGTTCCACTTCA
TCCGCGAGCTCTTCAAGGCGGGCAAGATCACCGCAGATTATATCTCGACA
GAAGAGCAGCGCGCCGATATGCTGACCAAGGTCCTTGGTAGGGGCAAGTT
GGAGTACCACCGGAAGGCTCTGATGAACCTGCCGATGGCGTACCAGAATT
TTGTTTTGGACCAGAGCCCTGCCAAAAAGCAACGGTCGGAAGCGCCGTTC
TGGTTCAATTTCGCATCGGGGGAGCAGAAGAGAGACTATGTGTCCGTCAT
GGCGAACAAAGCGATGACCTTGGAGCAGATGGACTTGTGCAAAACTCTGA
AGGATGAACTGCAGTCCGTCAACCAGTTCACCGGCCGCGACTCCATCGAA
TTTGCCGACAGAATCAAGGATATTCAGATGCGCGCCTTGGCGCCCAGCAA
CATGTTAGCTGCTGTCCCCATGGACGCGGACAACTCGATCGTTGCCGTGG
CAAGACCCGTGAACGACAGCATCGACCCCGAGACGGGGCTGCGCATCGCT
ACGGCGACATGCAGCGAGAGCGTGCGGGGCCCCGAGACGTCGATTTGCAA
CGAGGCGGCGAAAATGGGCTTCAAACTCGGCGAAAAAGCCGGACAGGTGG
GCAAAATGGCAAAGAGCCTGTACCGTAAGCGGCACGGGGTCGCAGCTGCT
GCCAACATCCCCAAGCGACACACTATTTTCCGGGGAAAGCCCTTCAGCGA
AAACACGCACTGGCAACGCGATGCCGACATAATTCAAGAAGCCATCCGCA
TCGTATGCGGCCTGGAGGACATTCCTCGGGGAAAGACCGCTCAAACGCTC
TTCAATTTTTTCCCGAGTGCGTGCCAATCTGAATGCCAAACTTGCGAGAT
GGAAATGTAG back to topprotein sequence of EsuBft103_25a-0001 >EsuBft103_25 ID=EsuBft103_25|Name=EsuBft103_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=395bp
MDRFVVSPASSPSAADPGSGADDAGGGTVVCASTKTQPVTAQSTTEAEYI
AAGECVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSAGS
KHIDVRFHFIRELFKAGKITADYISTEEQRADMLTKVLGRGKLEYHRKAL
MNLPMAYQNFVLDQSPAKKQRSEAPFWFNFASGEQKRDYVSVMANKAMTL
EQMDLCKTLKDELQSVNQFTGRDSIEFADRIKDIQMRALAPSNMLAAVPM
DADNSIVAVARPVNDSIDPETGLRIATATCSESVRGPETSICNEAAKMGF
KLGEKAGQVGKMAKSLYRKRHGVAAAANIPKRHTIFRGKPFSENTHWQRD
ADIIQEAIRIVCGLEDIPRGKTAQTLFNFFPSACQSECQTCEMEM back to topmRNA from alignment at Scaffold_344:245171..254595+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft103_25a-0001 ID=EsuBft103_25a-0001|Name=EsuBft103_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=9425bp|location=Sequence derived from alignment at Scaffold_344:245171..254595+ (Ectocarpus subulatus male Bft15b)
GCTGCTGACGCAGCCAGTACTCCAGTACATTCTTATATTCGCAGATTTCC
TCTGTATTACGCCTCAAGAACCAGCGGAAACCCATATACTCAGACCTCCT
CTGAGAGACACACCGCCACACGTCAAACACTAGCTACCAAACACGCCACA
GAGGTCGGGAGACCATACAACGATGGACAGGTTTGTAGTCTCCCCTGCCA
GCTCGCCGTCTGCTGCAGACCCCGGCAGTGGTGCTGATGATGCAGGGGGT
ATACGATAGCGTCGCTCATCAACCCAACTGATGGATGCCACTTGGTTGCT
TGGGAGTAATATTATAATGTTTCAATATTTCCTCATGTCCAAAACCAACA
AATTCAGTCGTTGAACTCGAACTTTCTATCGTTTTCCCCGCGATAGTGCC
TCTGTCAGATGGGCCAAAATCACTCATTTTTTTTGCTCTNCGCGGCGCAG
CCGCGACCGCGCGGCTTCGCCGCGCCACCAGTGTACTGATCGGATCCAGT
TTACTGGCTGCTGACGCAGCCAGTATACTTTTTTCTGGCGCGCAGCGCCA
GTACCCAACCCTACAAAAATAACCCATGGCGGGTCATCATCGCCAACAAC
AACGAAATTTGCAAGAATTGTTCGACACCACAGGCGGTCGGTCGCCGTGG
ACGTGAGCATGGCATGCCACGCCACGTTACACTTGCTGCGGTCATGGGAG
CTTTTCCCCTGTCTTCTTCATCGAGTCGGCAATGACTGCTAACACAGCCA
GCTTCTTCCACCTCGTCTTCATACCCACCTGCAACGAACATCGAACGTGG
TTTTCTCAGCGGTAGTGCCAGGCCTTCGCGCGATCGTCCCGCACGAGGCT
TGCCTGCAAGACGGCCCAAAGCGTGCACGAACCTCCTCTCGCACAAATTC
CAGGTCACTCCGAGTACCAGCCGTGTCCGGGTGGTTATCTCCAAACTTCA
TGGTACTGATTCTGAGGGCCCTCCCCAACAGCGAAAATGCCTCCGTGTAC
TCCTCCTGTGGGCGATTGAGACGCATGGTCGAGAAACCAAATCGCGTGCG
CAAACCGCTTTTACGACGACTGGGGCAACACAGCGATTTGCTCACTGTTC
GTATATGTCCTTTACTTGGAAGGGGAAGACGTTTTATCTCTTGTATTAGA
CACGCAAGGGGAGTAGGGAGAAGTGAAGCACTCTTTGGAGTTCGAGGGGT
CCCCGCACATGCAACCATTTCAAGGTGTACGTATGCCCCATCTGCGTGCC
CTCTGCTGTTGCCGGTAGATCTAACCAGTCCGTATCCAAACACACGACCA
CCCTCCCCGGTGTGCACGCGAATGGCAAACCTAACGTGGGGCATGGATAC
CCCTGATCTACCAAAGGGACTCAAAACAACAACAGGCTCGAGGGAAAATC
GGCCAACCAGAACAAAAACCGTTGTCTAACACCCAAAATATAGAAAACCG
TCGCTATCACGGAGGATTCCAACGGCCGCACTTCCAAGACAAGACCAAGG
CAGGACAGATTGAACCGGTCACGCTGATNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTGCCAAGGACCTTGGT
CAGCATGTCGGCGTGCTGCTCTCCAGTCGGAACATACTCTGCAGTGATCT
TGCCCGACTTGAATAGCTCTCGTGATGGAACCGCACGTCGATGTGCTTGC
TCCTCGCTAAGCTGAACGGGTTCTCGATTAAGGCGAGAGCCCCCTTGTTG
TCCTCAAGGACCTTGATCTTCGCCCCACTCGTCTCGGGCGCTATGAACGA
CAGAACGCCACGCACAAACAACGCCTNNNNNNNNNNNNNNNNNNNNNNNN
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AATGGTACCACCAAGCTGTCCCAGACGGCTTATATCGAGAGCATGCTCAA
CCGCTTCAATGTCACGACCACTGCTCCCACGCCCGCTGTCGTCGACGATG
ACCTAGGGCCGAAGAGAGACGACGAGTCCTCGGTGGACAAGCCCGTGAGG
GAAGCGATCGGATGCCTGATGTGGTTGTTGTTCACGAGGCCGAATATCGC
TGTTCGTCGATTCTAGTTACGCCGACAGCACCGTTAACAGGCGTTCGACG
ATGGGGCTAGCCGTGACTGTAGGTGGGACCGTAGTGTGCGCATCCACGAA
GACACAGCCAGTGACGGCTCAGTCGACCACGGAGGCAGAGTATATTGCAG
CCGGGGAGTGCGTGAAGGAAGCGTTGTTCGTGCGTGGTGTTCTGTCGTTC
ATTGCGCCCGAGACGAGCGGTGCCACGATCAGGGTCCGTGAGGACAACGA
GGGGGCTCTCGCGTTGGTGCAGAACCCTTTCAGCTCGGCGGGGAGCAAGC
ATATCGACGTGCGGTTCCACTTCATCCGCGAGCTCTTCAAGGCGGGCAAG
ATCACCGCAGATTATATCTCGACAGAAGAGCAGCGCGCCGATATGCTGAC
CAAGGTCCTTGGTAGGGGCAAGTTGGAGTACCACCGGAAGGCTCTGATGA
ACCTGCCGATGTAGGGTTCTGGTCTCGCCTACAGAGTACTGAGGAAGGCA
GGGCGTACCAGAATTTTGTTTTGGACCAGAGCCCTGCCAAAAAGCAACGG
TCGGAAGCGCCGTTCTGGTTCAATTTCGCATCGGGGGAGCAGAAGAGAGA
CTATGTGTCCGTCATGGCGAACAAAGCGATGACCTTGGAGCAGATGGACT
TGTGCAAAACTCTGAAGGATGAACTGCAGTCCGTCAACCAGTTCACCGGC
CGCGACTCCATCGAATTTGCCGACAGAATCAAGGATATTCAGATGCGCGC
CTTGGCGCCCAGCAACATGTTAGCTGCTGTCCCCATGGACGCGGACAACT
CGATCGTTGCCGTGGCAAGACCCGTGAACGACAGCATCGACCCCGAGACG
GGGCTGCGCATCGCTACGGCGACATGCAGCGAGAGCGTGCGGGGCCCCGA
GACGTCGATTTGCAACGAGGCGGCGAAAATGGGCTTCAAACTCGGCGAAA
AAGCCGGACAGGTGGGCAAAATGGCAAAGAGCCTGTACCGTAAGCGGCAC
GGGGTCGCAGCTGCTGCCAACATCCCCAAGCGACACACTATTTTCCGGGG
AAAGCCCTTCAGCGAAAACACGCACTGGCAACGCGATGCCGACATAATTC
AAGAAGCCATCCGCATCGTATGCGGCCTGGAGGACATTCCTCGGGGAAAG
ACCGCTCAAACGCTCTTCAATTTTTTCCCGAGTGCGTGCCAATCTGAATG
CCAAACTTGCGAGATGGAAATGTAG back to topCoding sequence (CDS) from alignment at Scaffold_344:245171..254595+ >EsuBft103_25a-0001 ID=EsuBft103_25a-0001|Name=EsuBft103_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1188bp|location=Sequence derived from alignment at Scaffold_344:245171..254595+ (Ectocarpus subulatus male Bft15b)
ATGGACAGGTTTGTAGTCTCCCCTGCCAGCTCGCCGTCTGCTGCAGACCC
CGGCAGTGGTGCTGATGATGCAGGGGGTGGGACCGTAGTGTGCGCATCCA
CGAAGACACAGCCAGTGACGGCTCAGTCGACCACGGAGGCAGAGTATATT
GCAGCCGGGGAGTGCGTGAAGGAAGCGTTGTTCGTGCGTGGTGTTCTGTC
GTTCATTGCGCCCGAGACGAGCGGTGCCACGATCAGGGTCCGTGAGGACA
ACGAGGGGGCTCTCGCGTTGGTGCAGAACCCTTTCAGCTCGGCGGGGAGC
AAGCATATCGACGTGCGGTTCCACTTCATCCGCGAGCTCTTCAAGGCGGG
CAAGATCACCGCAGATTATATCTCGACAGAAGAGCAGCGCGCCGATATGC
TGACCAAGGTCCTTGGTAGGGGCAAGTTGGAGTACCACCGGAAGGCTCTG
ATGAACCTGCCGATGGCGTACCAGAATTTTGTTTTGGACCAGAGCCCTGC
CAAAAAGCAACGGTCGGAAGCGCCGTTCTGGTTCAATTTCGCATCGGGGG
AGCAGAAGAGAGACTATGTGTCCGTCATGGCGAACAAAGCGATGACCTTG
GAGCAGATGGACTTGTGCAAAACTCTGAAGGATGAACTGCAGTCCGTCAA
CCAGTTCACCGGCCGCGACTCCATCGAATTTGCCGACAGAATCAAGGATA
TTCAGATGCGCGCCTTGGCGCCCAGCAACATGTTAGCTGCTGTCCCCATG
GACGCGGACAACTCGATCGTTGCCGTGGCAAGACCCGTGAACGACAGCAT
CGACCCCGAGACGGGGCTGCGCATCGCTACGGCGACATGCAGCGAGAGCG
TGCGGGGCCCCGAGACGTCGATTTGCAACGAGGCGGCGAAAATGGGCTTC
AAACTCGGCGAAAAAGCCGGACAGGTGGGCAAAATGGCAAAGAGCCTGTA
CCGTAAGCGGCACGGGGTCGCAGCTGCTGCCAACATCCCCAAGCGACACA
CTATTTTCCGGGGAAAGCCCTTCAGCGAAAACACGCACTGGCAACGCGAT
GCCGACATAATTCAAGAAGCCATCCGCATCGTATGCGGCCTGGAGGACAT
TCCTCGGGGAAAGACCGCTCAAACGCTCTTCAATTTTTTCCCGAGTGCGT
GCCAATCTGAATGCCAAACTTGCGAGATGGAAATGTAG back to top
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