Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4792.ETI53028 |
| ProteomeId | EsuBft103_19 |
| Protein domains | IPR027806 |
| Protein domains | PTHR22930 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 4776|Peronosporales |
| Length | 92 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.02e-11 |
| EggNOG OGs | KOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | nuclease activity |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft103_19a-0001 ID=EsuBft103_19a-0001|Name=EsuBft103_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=928bp|location=Sequence derived from alignment at Scaffold_344:184878..186614+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCCCAGGTGATCTGCGACGCGGACTACATCGTCACTGCCGCCTGCTG
CAACACCCCGGGAAGCACCAACGTTCGGCAGGCATACAAGGAGGCCGAGT
TCGACCAGCTTGTCGAGGGTCTTCCAGGCAACTATGACGTCGTGGGAGAT
ACGGCTTACGGGGCAACGGACAAGATGCTTGTACCGTACCCAGGATGCGA
CCTCGACGCAGACCAACAGGCCTTCAACTTCTTCCAGTCGCAAGGGCGCA
TGTGCATCGAGCAGACGTTTGGGATCATGGTGCATCTGCGCAACACCGCG
AGCGTTGTGCACGCTATCACTCGGCTTCACAACTACCTCCGAAGGTGTCG
TTCTGAACCGCCACCTGCCACCGCCCGGTTCTTGAATGAGAACGGAACCA
TCAGGAGCAACCGCTGGGCAACACCATCAGACTCGCGGAACATCAGGGAG
AACATTCGGAATCGAACTTTCATGCGGCCGGCGGAAAACATCCCGCGAAA
CAGGCGATGGAGGACGGCCATCACTCGTCGTTGCACCGGCGAATGGGCCT
CACCAGAGTGCCCACTTCTGTCCGACATCGTGGTGGGTGTACCCACCGGC
GCCAACTAATTTTTGCATGTACTTATGTCTATATTTTGACGCACTTCTGT
CCAAATTGTACCCACATCTGTCCACTTACGGACGGCCGAAATCGAGTGGA
AATCGAGCGGAAATCGACCCCCACGTCACCGCACGGCAGAACATCGAATA
GCCTCGGAATGTCTCAGAACCTCCCAACACCGTATCCATGGCATCTTTGG
TATCCATGGCTGCCGACTGCGGACCGACCGCGGAGGAACATGTCAGACAC
ATGCCAGGCCCCTTCGGTACCGGCACGGGAGGATGCCAGGCACGGGAAGT
TGCCCGCGGCAAGCCCGGCGAGCAGCGC back to topprotein sequence of EsuBft103_19a-0001 >EsuBft103_19 ID=EsuBft103_19|Name=EsuBft103_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=202bp
MPQVICDADYIVTAACCNTPGSTNVRQAYKEAEFDQLVEGLPGNYDVVGD
TAYGATDKMLVPYPGCDLDADQQAFNFFQSQGRMCIEQTFGIMVHLRNTA
SVVHAITRLHNYLRRCRSEPPPATARFLNENGTIRSNRWATPSDSRNIRE
NIRNRTFMRPAENIPRNRRWRTAITRRCTGEWASPECPLLSDIVVGVPTG
AN back to topmRNA from alignment at Scaffold_344:184878..186614+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft103_19a-0001 ID=EsuBft103_19a-0001|Name=EsuBft103_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1737bp|location=Sequence derived from alignment at Scaffold_344:184878..186614+ (Ectocarpus subulatus male Bft15b)
ATGCCCCAGGTATTTGTATATGTTGTATATGTATATGTGTGTGTTTCCCG
ACTCAGGTGATCTGCGACGCGGACTACATCGTCACTGCCGCCTGCTGCAA
CACCCCGGGAAGCACCAACGTTCGGCAGGCATACAAGGAGGCCGAGTTCG
ACCAGCTTGTCGAGGGTCTTCCAGGCAACTATGACGTCGTGGGAGATACG
GCTTACGGGGCAACGGACAAGATGCTTGTACCGTACCCAGGATGCGACCT
CGACGCAGACCAACAGGCCTTCAACTTCTTCCAGTCGCAAGGGCGCATGT
GCATCGAGCAGACGTTTGGGATCATGGTGAGTGTTGGCGTAGGTAGTTCG
TGGGCATATCACGGGATCATTAGCCTGTTCGCGAATGGTGTGCACGATTG
GTGACAGATTCAGCTGGGTCGTGTCATGTTTTTTATAGCACGAGAACAAA
GTTTACAAAGTACATCCGGAGATATCGCACAAACATTGCTATGAAGTGGA
GAGGTGGCTGTGAAATCGCGGGATACTTGATACCTGAACGCCCCCCCGCT
CCCCGCCCTCGCCCTACATGTTGCAGATGAAGCAGTGGCCCATTCTGTGG
AGCCCGCTGCAGGTGCATCTGCGCAACACCGCGAGCGTTGTGCACGCTAT
CACTCGGCTTCACAACTACCTCCGAAGGTGTCGTTCTGAACCGCCACCTG
CCACCGCCCGGTTCTTGAATGAGAACGGAACCATCAGGAGCAACCGCTGG
GCAACACCATCAGACTCGCGGAACATCAGGGAGAACATTCGGAATCGAAC
TTTCATGCGGCCGGCGGAAAACATCCCGCGAAACAGGCGATGGAGGACGG
CCATCACTCGTCGTTGCACCGGCGAATGGTAAACTAGGGCGGGGGGGGGG
GGGTACTCATAGTCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCAT
CCCTACAAAGCCGGGACGGAGCACGCCGGGTTCTCACCGGACCAGGCCCT
CACATCACCAAGCGCGAAGCGCCGTGAGATATTCGGCGAGTCGCATGAAG
GGTGCGCTGCATCCTGCTAAGGGTGTTCGGCATCTTGTGCTTACTTCCTT
GCGTACGGATGACAGCTGCGAATGAGTTAATTTATTGGGAAACGGACACA
AGTGGATATGCCCACCCCTTTCTCGGACAAAAGTGGGTACTGTACTCGAT
AATCCAGCGCGAGCGCACTCCATAGGCGGCCCCCAAACGACTCAAAACCC
CATTCTGACACCTGCACGACACAGCCAGGCTGTACACAGCACGGGCATCG
ATTTTTTCCCACTTTCAGGCACACCTTTGGCCCTTATACCGCCGAGGCGC
GCAGGGCCTCACCAGAGTGCCCACTTCTGTCCGACATCGTGGTGGGTGTA
CCCACCGGCGCCAACTAATTTTTGCATGTACTTATGTCTATATTTTGACG
CACTTCTGTCCAAATTGTACCCACATCTGTCCACTTACGGACGGCCGAAA
TCGAGTGGAAATCGAGCGGAAATCGACCCCCACGTCACCGCACGGCAGAA
CATCGAATAGCCTCGGAATGTCTCAGAACCTCCCAACACCGTATCCATGG
CATCTTTGGTATCCATGGCTGCCGACTGCGGACCGACCGCGGAGGAACAT
GTCAGACACATGCCAGGCCCCTTCGGTACCGGCACGGGAGGATGCCAGGC
ACGGGAAGTTGCCCGCGGCAAGCCCGGCGAGCAGCGC back to topCoding sequence (CDS) from alignment at Scaffold_344:184878..186614+ >EsuBft103_19a-0001 ID=EsuBft103_19a-0001|Name=EsuBft103_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=609bp|location=Sequence derived from alignment at Scaffold_344:184878..186614+ (Ectocarpus subulatus male Bft15b)
ATGCCCCAGGTGATCTGCGACGCGGACTACATCGTCACTGCCGCCTGCTG
CAACACCCCGGGAAGCACCAACGTTCGGCAGGCATACAAGGAGGCCGAGT
TCGACCAGCTTGTCGAGGGTCTTCCAGGCAACTATGACGTCGTGGGAGAT
ACGGCTTACGGGGCAACGGACAAGATGCTTGTACCGTACCCAGGATGCGA
CCTCGACGCAGACCAACAGGCCTTCAACTTCTTCCAGTCGCAAGGGCGCA
TGTGCATCGAGCAGACGTTTGGGATCATGGTGCATCTGCGCAACACCGCG
AGCGTTGTGCACGCTATCACTCGGCTTCACAACTACCTCCGAAGGTGTCG
TTCTGAACCGCCACCTGCCACCGCCCGGTTCTTGAATGAGAACGGAACCA
TCAGGAGCAACCGCTGGGCAACACCATCAGACTCGCGGAACATCAGGGAG
AACATTCGGAATCGAACTTTCATGCGGCCGGCGGAAAACATCCCGCGAAA
CAGGCGATGGAGGACGGCCATCACTCGTCGTTGCACCGGCGAATGGGCCT
CACCAGAGTGCCCACTTCTGTCCGACATCGTGGTGGGTGTACCCACCGGC
GCCAACTAA back to top
|