EsuBft1039_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1039_9a-0001
Unique NameEsuBft1039_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_324contigScaffold_324:1196088..1201023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1039_9
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon8
Length173
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001170.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1039_9aEsuBft1039_9aEctocarpus subulatus male Bft15bgeneScaffold_324 1196088..1201023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1039_9a-0001EsuBft1039_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_324 1196088..1201023 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1039_9a-0001-exonEsuBft1039_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_324 1196088..1196795 -
EsuBft1039_9a-0001-exonagat-exon-107263Ectocarpus subulatus male Bft15bexonScaffold_324 1197077..1197212 -
EsuBft1039_9a-0001-exonagat-exon-107260Ectocarpus subulatus male Bft15bexonScaffold_324 1197391..1197407 -
EsuBft1039_9a-0001-exonagat-exon-107258Ectocarpus subulatus male Bft15bexonScaffold_324 1197826..1198146 -
EsuBft1039_9a-0001-exonagat-exon-107259Ectocarpus subulatus male Bft15bexonScaffold_324 1198839..1198949 -
EsuBft1039_9a-0001-exonagat-exon-107261Ectocarpus subulatus male Bft15bexonScaffold_324 1199065..1199085 -
EsuBft1039_9a-0001-exonagat-exon-107264Ectocarpus subulatus male Bft15bexonScaffold_324 1199943..1200231 -
EsuBft1039_9a-0001-exonagat-exon-107262Ectocarpus subulatus male Bft15bexonScaffold_324 1200896..1201023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1039_9a-0001-cdsEsuBft1039_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_324 1196088..1196795 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1039_9a-0001 ID=EsuBft1039_9a-0001|Name=EsuBft1039_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1731bp|location=Sequence derived from alignment at Scaffold_324:1196088..1201023- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCCTCATGGATCGCGCCCCAAACGATTGGCGCAGTCTCCATGGTA
CGACGGCGAAACGACGGCGAACGATGTTCGGGCGTCCACTGCCGGGCCTG
GGATGAGGCGCGCCGCGGCCAGCCATGGGGTGACCATGTCCATTCTAGGG
CGGAACGCTCTCCTCGACACCACGAACGCCGGAGCGGCTTCGCCGCAACG
GTTGCGGTCGCTGAGGGGTTCCGCATTGAGGTCAGCTACCGCTGCCTGGG
GTGAAGGAGGCGGGAGGGGTTCGACGGGTGGAAGAACTAGTCCTAATGTG
GTTCACGTGCGCACCACCAAAAGGATGGACCAGGAGATGGGGTTCCTCAG
AGTAGGCACGTACTTTACGGTGAGAAACATGCACCGGGAGTCGGAGAATG
TCACCGCAGCACTATGGGAAATAAATATGCTAATCCAGGCATCCAAAGAC
CCTCTGAGGCACGGTTTGACTACTGCACTGGCCGGAAGGCTTGTTCGACA
GACGGACCATGACGGTCTGAAGTGGGACCTGCTCAAGCAAGTCCTCAAGG
TGATCACAGGGTCGCAGCACGGACTACCGCTACAGGCTGTGAAAGAAGTA
GCCGCTGCATTTGGAACGGTCGTCGGCACCTCCAAATTGGCCACCAAGGC
TCAGGTATGGAAGGCGGTGACGAAGGACATATCTGTATCGTTGCCCGTAC
GTGGTCAGCGATATCCCGTCCAGTTATCGATGAAGCGTCCGCGCCCGGAG
AGGGAGTCGGTGCTGTTCCACAAGTTGTTGGGGATTGCGCCACCGGTGCC
TACTGCGACGGGTTCCGCGTCTAGGAGCGCGATGGCCAGCGAAAGCCCTC
GTCGGGAACAGACAAACGCTGCCGCGAACATCCCCAGGATGCGCCACAGG
CATCGCTTGGAGCAGGAGAGGCTCGAGAAAGAGAGGCAGGCGCACCTGGA
GGAGGAGCGAGAGAGGTGGAAGCGCAGGCGTAGGCGGGAACAAGAGAAGG
GGATCGCGCCTTCCATACAGCAGGGTCTTGCCGGTCCGGAATCTCACAGT
GCTTTCGCACTGTCCAGCGCGGACGGCATCGGCGGCGGCGGCGGCAACCG
CCATGGCGGGGACGACGACCGCGGAAATTCCAGCTTAGAATGGAACCGCG
TTTGCTTCGCCGAGACGGCCCGCATGTTCACCCTGGTGTGCAGCAACGAC
CAGGAGCGGCACGCCGTGACGACGACGTATCGCCACCGCTTCTGCCTGGA
GCTGAGAGCGGTCATGCAGGAAGGGAGGGACCCCCTCCGTTTCAGGAACA
ACCAGAACAACGGTGGCGACGGCGGTTACGACTCGCCTAATATGATAGAG
TCCGACCGATTTCTTTCGCCACCACACCGCCCCAGCAATCGCTCGTCGGA
AGATGGAAAAGCCTCCTCGCTGCAGCCCGACGCATACTCTTCTACCGAGA
CGCCACATGTCTTGCCCACCGGCGGTCGGCCGACAACAGCAAAACCCGCG
AAGGAACGACCTGGTATTCGGCTGCAAAAGGGAGAAAGACATGGTCGAGG
AGGGGACAGCGGGATGGGTTCGCCCGGGCCAGAAGAGAATGGCATCACGG
CGGAAGAGTTTTCGGAGGCTTTGGCGCGATGCCCCGAAATGCTCGAAGCG
TTCGGGAGCCAGCTAGACGCGAGGCTACGACACCGACATCGGCCTATTTG
GATGGCGCCGTTCATGAGGCAGGGGGGCTAG
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protein sequence of EsuBft1039_9a-0001

>EsuBft1039_9 ID=EsuBft1039_9|Name=EsuBft1039_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=576bp
MYPHGSRPKRLAQSPWYDGETTANDVRASTAGPGMRRAAASHGVTMSILG
RNALLDTTNAGAASPQRLRSLRGSALRSATAAWGEGGGRGSTGGRTSPNV
VHVRTTKRMDQEMGFLRVGTYFTVRNMHRESENVTAALWEINMLIQASKD
PLRHGLTTALAGRLVRQTDHDGLKWDLLKQVLKVITGSQHGLPLQAVKEV
AAAFGTVVGTSKLATKAQVWKAVTKDISVSLPVRGQRYPVQLSMKRPRPE
RESVLFHKLLGIAPPVPTATGSASRSAMASESPRREQTNAAANIPRMRHR
HRLEQERLEKERQAHLEEERERWKRRRRREQEKGIAPSIQQGLAGPESHS
AFALSSADGIGGGGGNRHGGDDDRGNSSLEWNRVCFAETARMFTLVCSND
QERHAVTTTYRHRFCLELRAVMQEGRDPLRFRNNQNNGGDGGYDSPNMIE
SDRFLSPPHRPSNRSSEDGKASSLQPDAYSSTETPHVLPTGGRPTTAKPA
KERPGIRLQKGERHGRGGDSGMGSPGPEENGITAEEFSEALARCPEMLEA
FGSQLDARLRHRHRPIWMAPFMRQGG
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mRNA from alignment at Scaffold_324:1196088..1201023-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1039_9a-0001 ID=EsuBft1039_9a-0001|Name=EsuBft1039_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4936bp|location=Sequence derived from alignment at Scaffold_324:1196088..1201023- (Ectocarpus subulatus male Bft15b)
ATGTACCCTCATGGATCGCGCCCCAAACGATTGGCGCAGTCTCCATGGTA
CGACGGCGAAACGACGGCGAACGATGTTCGGGCGTCCACTGCCGGGCCTG
GGATGAGGCGCGCCGCGGCCAGCCATGGGTAAGAACCGTAATAAACGTTG
TTTCCGTCCCCGCAGTACAGTGCTTCAACCGTTGTTGTCTCTCTGTTGGT
GAGTATTTGGTTTTGGCGGGCGGTATGTTCCAATGGTCTCTTAGCCAAGG
TGCTCTCCAAACGACTACCGTACTTGATGCACATGCCGGACTTGGTTGTT
GGACCTATGTATACCTTCGTGTGGTCCACCCCAATGGCATTTATTGGTAA
GTTCTGTTTCGGTCGTTTCATGAAAACTTGCTCAGGTTCTGCAGTCTCTT
GTCGTCCACAGTTTTTCGAAACCCAATAACCTTGTGTCCGTATTCTTCGG
TGTTGTGCCCTCGGGACAAAATTTGGTCACCGAGGTAGAAAATGTATATC
CATGTACAGTGTAGGCCAGTTTAACAAGATACCGGTGAGAAAAACAGCCA
AAATGCTCACGAGTAATATACAAAATATGAGAAACATAGTTCAGCCAAAC
AACCTGCACTAAAACAACTACAAGTATCAAGTACCCTTGCTCAACGTTGG
TGAAAACATAACCAAATGATCTTCGACCCGAAACTGACTTTGCCGGACCT
CGTACTGTATACCATCTCCTCACCCCCCACCCCCCAGGTACTTACCTGAC
AAATCGACCCCCCTCTCCTACCGTTCTTGCCTCGGAAACCAGGGTGACCA
TGTCCATTCTAGGGCGGAACGCTCTCCTCGACACCACGAACGCCGGAGCG
GCTTCGCCGCAACGGTTGCGGTCGCTGAGGGGTTCCGCATTGAGGTCAGC
TACCGCTGCCTGGGGTGAAGGAGGCGGGAGGGGTTCGACGGGTGGAAGAA
CTAGTCCTAATGTGGTTCACGTGCGCACCACCAAAAGGATGGACCAGGAG
ATGGGGTTCCTCAGAGTAGGCACGTACTTTACGGTGAGAAACATGCACCG
GGAGTCGGAGAATGTCACCGCAGCACTATGGGTAACTTATTTTTGTTGGG
TGAATTGATGATATAGCGGGTAGCCTTTCAACGACGTGCGACAACACGGT
ACGAGCGAGCATGGAAGAAATCCAAACCAATCGAGAGTGGGTCATGGGGC
GTGAGACGATGGGTTAAACTGGTAAGAATTAAGCGTGCTTGAGCACAACA
AGGGATGTCGCTTTGGGACGGCGTGCAGGACGACCGTCACCACCGTGGCG
TGGAGAGCATCGCTGGCCTTGTCTAACTGAATTGCTGTAGCGAAGGTGTC
GTTGTCGTACCCGCTTTGCTTGCGCCTTCTGGGCTCGCAATATTCAGGCT
CGTAATAACGAGGTTGGGGGTGGATGTCGCTTGGTGGAGGTCATGACTTC
ACATTGGTGACTTTCCGCCATGCGTACAAGTCGTTCAGCTTCGCAGCATG
GTTCTATCAAACCTTCGTTTGTGCCCCCAAGCGAAAGTTTTCCTTCCCCG
TCCAATGCCTCAAAAGACCTCCGTACGCGGTTGAAGCTCCAAGCATCCTA
CATCCGTGATGGTTGTGGCTTGAAACTTTGACTGTCTCCTTGAACGCGCC
GTCACTATCCATCGAATGATAGATCGTGCCTGGCGTTTGCACCGACGTTC
GAGATTTCTAGCCATGGTAGACTCATAGCATCAAAAGCCATGGATACGTG
CTCCGCCTGGTTTGGCTCACAGCGAGGTTGTGAGTAGCCTGGTTTGTTGC
AGCAGTTTGTTTTCTACCCTTCGTGTGCAGACCCCGTCGCCATGTAGAAC
TGAACGTGAATGCAAGTCCCGGGGGGGGAAAGGGAACAGCCTGAAAGAAT
TTACTGCGATGTGGCACTACGGGAATAAGCTAGTTTAGGAAATAAATATG
CTAATCCAGGTATGTTACGCAACACCCTTCCAGCACGGAACATACAATTA
TATGAGTTGTTCCTGCAACTTGCCCCCGACTACGTGCGACTGCTGCGGCT
GCTGCTGTCGGCTGTATTCCGCAGGCATCCAAAGACCCTCTGAGGCACGG
TTTGACTACTGCACTGGCCGGAAGGCTTGTTCGACAGACGGACCATGACG
GTCTGAAGTGGGACCTGCTCAAGCAAGTCCTCAAGGTTTGTAGTATCTTT
GTGTGATGTTGTCGTTGTGCCTAGTCTGCTCTATTCATGTCTTGACCATG
TGTGAGTCGCGATAGCCAGCTACAACCTCATGTGAGCCTCGTGCTGCAAG
GGTGCGATTTGGTCGCAAGTGGAGGTTTGATTGCGTTCGACTCTCTCTGG
AGGGATGGTGCGTCAGTAAGCAGCCGCGTGAAGCTCAACCCTCCCCCCCT
GTAGCCAACACAAATCCGCTCAACCGCAGACGAAATATAATGCCGTACGG
CTTCTTGGCTCTTGCCGCAGTGTGAGACCTGAGGTTGTGTCCGCTTATCG
CCCAAAAGTGGAACAGGCTGGCGTGCATGCCTTTTCGCCTGATGCATTTC
ACGTTGCGCCAGGTCTTTCAGCTCCATCTGTGACGTTAGCTCAGCAGTAT
GCACTCGCTCGTATCAGTTGACCCATATCGAACTATTGCTGTTGATGTTG
TCTTTACACAACCTAAAAACTGTTCCGATTTCTCCATCCAGTACCTCCCT
CTGCCCATATGGTCGCGCTTATTGATCACTCATTTTGCAAGAAAGCTGCC
CCACTCAGCATAATTCGCTCCTTTGGACCTGGCTGGGTCTTTGTATTGTA
TGGTGAGTTGACGGGCAGCTCCTTGCCTCGGCTACTGCTACGGCTGCGCC
GCCTCTGATATGCTTCACTGATGCCAGGTGATCACAGGGTCGCAGCACGG
ACTACCGCTACAGGCTGTGAAAGAAGTAGCCGCTGCATTTGGAACGGTCG
TCGGCACCTCCAAATTGGCCACCAAGGCTCAGGTATGGAAGGCGGTGACG
AAGGACATATCTGTATCGTTGCCCGTACGTGGTCAGCGATATCCCGTCCA
GTTATCGATGAAGCGTCCGCGCCCGGAGAGGGAGTCGGTGCTGTTCCACA
AGTTGTTGGGGATTGCGCCACCGGTGCCTACTGCGACGGGTTCCGCGTCT
AGGAGCGCGATGGCCAGCGAAAGCCCTCGTCGGGAACAGACAAACGCTGT
ATGTTTCCATGCCAAAAGGATTACCGAGAGTATGGACCATCAAGAACCGT
CCAAGCACACGGTAGTCAGCTAACATCCAGTGTGGTAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGACTCACCCCCTCCCAGGTCTTCTTGTCCACCC
CTGCCGTTCCGCGTTCGTGCCCTTTCCCGTCCTGGTCCCGTTCCGTCGGG
AACGCTCAACCTCCCTCCCGCCTACCATCCCCAGTTCGTCGACAATATCA
CGGGGAAGCACGAGGGATTTCCCGAGAGCGAGCTGAACACCCTCTTCGGG
TTCTTCCGGGGACCGATGGCACCCGGTCCCACCACGGCCGCCACCTTTTC
CGAGGAAAACCGCAACAAATGCATACAATCACAGCAACGCGGAGGAGTCG
GAACCAATAGCAGTAGGCCGCGAACATCCCCAGGTAATTTCAGTAGAGCT
GGTAAAAGCGGTAGTCGTGGCGGCAAGGAGAAAGAGCGTGCCCAGGGAGC
AGACTGGACTATGGCCGTGGCGTGCTTGAGGCTACTCGCGAAACCGAAGG
AGCCGGTAAAGGCGGCGGTGCTTGGAGTGTTTGATGTGTTTGCGCGTGCC
CGGGGGGACAGGATGCGCCACAGGCATCGCTTGGAGCAGGAGAGGCTCGA
GAAAGAGAGGCAGGCGCACCTGGAGGAGGAGCGAGAGAGGTGGAAGCGCA
GGCGTAGGCGGGAACAAGAGAAGGGGATCGCGCCTTCCATACAGCAGGTG
CGAAGAGCCCTTCTCAAAACACTAAAACCCTAAGGTCCCACCCAAAATTA
TCTCCGAAGCTTAGCGGTTTTTAATGGTAGGTCATCGTCAATAGCTTTTT
CCGAGAGGGGTAGAACCGTCCGGGGCATGCCATTACGACCAGGACCTATT
CCGCAAGCTTCAGTCAAACGCGAACGCGAGGTAGCGCGACGCCTGCTTTG
GTGTTTTCTGGTGCAGTGTAGCAAACCTAAACCCTACCTCTCGCCATGCT
GCTGCCACTGCCGGTGCTCCTCCCCAAGGGTCTTGCCGGTCCGGAATCTC
ACAGTGCTTTCGCACTGTCCAGCGCGGACGGCATCGGCGGCGGCGGCGGC
AACCGCCATGGCGGGGACGACGACCGCGGAAATTCCAGCTTAGAATGGAA
CCGCGTTTGCTTCGCCGAGACGGCCCGCATGTTCACCCTGGTGTGCAGCA
ACGACCAGGAGCGGCACGCCGTGACGACGACGTATCGCCACCGCTTCTGC
CTGGAGCTGAGAGCGGTCATGCAGGAAGGGAGGGACCCCCTCCGTTTCAG
GAACAACCAGAACAACGGTGGCGACGGCGGTTACGACTCGCCTAATATGA
TAGAGTCCGACCGATTTCTTTCGCCACCACACCGCCCCAGCAATCGCTCG
TCGGAAGATGGAAAAGCCTCCTCGCTGCAGCCCGACGCATACTCTTCTAC
CGAGACGCCACATGTCTTGCCCACCGGCGGTCGGCCGACAACAGCAAAAC
CCGCGAAGGAACGACCTGGTATTCGGCTGCAAAAGGGAGAAAGACATGGT
CGAGGAGGGGACAGCGGGATGGGTTCGCCCGGGCCAGAAGAGAATGGCAT
CACGGCGGAAGAGTTTTCGGAGGCTTTGGCGCGATGCCCCGAAATGCTCG
AAGCGTTCGGGAGCCAGCTAGACGCGAGGCTACGACACCGACATCGGCCT
ATTTGGATGGCGCCGTTCATGAGGCAGGGGGGCTAG
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Coding sequence (CDS) from alignment at Scaffold_324:1196088..1201023-

>EsuBft1039_9a-0001 ID=EsuBft1039_9a-0001|Name=EsuBft1039_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1731bp|location=Sequence derived from alignment at Scaffold_324:1196088..1201023- (Ectocarpus subulatus male Bft15b)
ATGTACCCTCATGGATCGCGCCCCAAACGATTGGCGCAGTCTCCATGGTA
CGACGGCGAAACGACGGCGAACGATGTTCGGGCGTCCACTGCCGGGCCTG
GGATGAGGCGCGCCGCGGCCAGCCATGGGGTGACCATGTCCATTCTAGGG
CGGAACGCTCTCCTCGACACCACGAACGCCGGAGCGGCTTCGCCGCAACG
GTTGCGGTCGCTGAGGGGTTCCGCATTGAGGTCAGCTACCGCTGCCTGGG
GTGAAGGAGGCGGGAGGGGTTCGACGGGTGGAAGAACTAGTCCTAATGTG
GTTCACGTGCGCACCACCAAAAGGATGGACCAGGAGATGGGGTTCCTCAG
AGTAGGCACGTACTTTACGGTGAGAAACATGCACCGGGAGTCGGAGAATG
TCACCGCAGCACTATGGGAAATAAATATGCTAATCCAGGCATCCAAAGAC
CCTCTGAGGCACGGTTTGACTACTGCACTGGCCGGAAGGCTTGTTCGACA
GACGGACCATGACGGTCTGAAGTGGGACCTGCTCAAGCAAGTCCTCAAGG
TGATCACAGGGTCGCAGCACGGACTACCGCTACAGGCTGTGAAAGAAGTA
GCCGCTGCATTTGGAACGGTCGTCGGCACCTCCAAATTGGCCACCAAGGC
TCAGGTATGGAAGGCGGTGACGAAGGACATATCTGTATCGTTGCCCGTAC
GTGGTCAGCGATATCCCGTCCAGTTATCGATGAAGCGTCCGCGCCCGGAG
AGGGAGTCGGTGCTGTTCCACAAGTTGTTGGGGATTGCGCCACCGGTGCC
TACTGCGACGGGTTCCGCGTCTAGGAGCGCGATGGCCAGCGAAAGCCCTC
GTCGGGAACAGACAAACGCTGCCGCGAACATCCCCAGGATGCGCCACAGG
CATCGCTTGGAGCAGGAGAGGCTCGAGAAAGAGAGGCAGGCGCACCTGGA
GGAGGAGCGAGAGAGGTGGAAGCGCAGGCGTAGGCGGGAACAAGAGAAGG
GGATCGCGCCTTCCATACAGCAGGGTCTTGCCGGTCCGGAATCTCACAGT
GCTTTCGCACTGTCCAGCGCGGACGGCATCGGCGGCGGCGGCGGCAACCG
CCATGGCGGGGACGACGACCGCGGAAATTCCAGCTTAGAATGGAACCGCG
TTTGCTTCGCCGAGACGGCCCGCATGTTCACCCTGGTGTGCAGCAACGAC
CAGGAGCGGCACGCCGTGACGACGACGTATCGCCACCGCTTCTGCCTGGA
GCTGAGAGCGGTCATGCAGGAAGGGAGGGACCCCCTCCGTTTCAGGAACA
ACCAGAACAACGGTGGCGACGGCGGTTACGACTCGCCTAATATGATAGAG
TCCGACCGATTTCTTTCGCCACCACACCGCCCCAGCAATCGCTCGTCGGA
AGATGGAAAAGCCTCCTCGCTGCAGCCCGACGCATACTCTTCTACCGAGA
CGCCACATGTCTTGCCCACCGGCGGTCGGCCGACAACAGCAAAACCCGCG
AAGGAACGACCTGGTATTCGGCTGCAAAAGGGAGAAAGACATGGTCGAGG
AGGGGACAGCGGGATGGGTTCGCCCGGGCCAGAAGAGAATGGCATCACGG
CGGAAGAGTTTTCGGAGGCTTTGGCGCGATGCCCCGAAATGCTCGAAGCG
TTCGGGAGCCAGCTAGACGCGAGGCTACGACACCGACATCGGCCTATTTG
GATGGCGCCGTTCATGAGGCAGGGGGGCTAG
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