EsuBft1039_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1039_3a-0001
Unique Name	EsuBft1039_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_324	contig	Scaffold_324:1134328..1135970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1039_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	164
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_3a	EsuBft1039_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_324 1134328..1135970 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_3a-0001-exon	EsuBft1039_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_324 1134328..1135970 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_3a-0001-exon	agat-five_prime_utr-227	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_324 1134328..1134353 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_3a-0001-cds	EsuBft1039_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_324 1134354..1134710 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_3a-0001-exon	agat-three_prime_utr-369	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_324 1134711..1135970 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_3a-0001	EsuBft1039_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_324 1134354..1134710 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_324:1134328..1135970+
coding sequence from alignment at Scaffold_324:1134328..1135970+

spliced messenger RNA

>EsuBft1039_3a-0001 ID=EsuBft1039_3a-0001|Name=EsuBft1039_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1643bp|location=Sequence derived from alignment at Scaffold_324:1134328..1135970+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGGCGTTCGCCGTGTGGGTCTGTGAATGCTTCTGGTGGGGCACGAGGGA
TCTCTTGCCAGATGGCTGGACGTTCTGCTCGAACGTGATGTCGAGGGTGC
ACATGCCTTGGTCTCGCGGATCTTGTGTGAGTGGAATCACCTTGCCTTGG
ATAGTGATGTGCGGAGTGCTCTCTTCGACGACGCAGCGCAGTCCCTTGTT
CAGGAGGGAGGTTGGCGAAAAAATGTTGCGACCAAGCCCCGGAACGATGA
GTCCCTGAATCTGACGCGCAATTGCTGTCCTCGATTGTACTTGACGGTGC
AGTGTAGGATGCCCGTGGCCGTGCCTTTGAGTTGGCTTTCTCCGGCCACG
TCCACGATCTTTGGAGAGTTTCGCTGGGTGTAATCGTGGAGGTTTCCGTC
GGGGATGAGGCGATTGTCAAACATGGTCTCCGATACTCCCGTGTCTACCA
GGAGGCCTACCCCGGTGGAGCTCGCGGCGAAGTTGCGTCCTGAGATGCGG
GAACACGTGGCGAACATGAAGCCGCTGTCAAAGGCGTCCTCGTCCCGGGT
GAAGTCGACAACTGCCACTTCATTGTTTGAGTCGTGCTTGTTGGACGCCG
ACGAGCAGTGAGTGCAGTTGGAGCACGCGGTGAATGCTTTACTTGAGTCC
TTGGTGTCTTCCGGGCGCTTTCCTCCTTGCTGGTAGCATTCCTCGTCCGA
GTGAGACGTGGTGTTGTGCTTGGAGCACCACTTGGTAGCTCCGGCGGGCT
TCGTTTTCTTCATCGCCCTGTTCTTGATCTTGGGGCAGTTCCTCCTGATG
TGCCCCGGCTCGTAGCAGCTGTGGCAGATGATGTCAGACGCGGTCGTTGC
CATGGCAAATCCTCGACCAGCTATGCGTCCCTTCCATCCCTTGCGCGATT
GTTCGTCCAAGAAGATGTTGCGCATGGTGGATTGCATGTCCAGGACGTTG
AAGGTTGGGTCTCTGAACACCATCAGTTTGACGTCCTTGTATTCGTCGGA
GAAGCCCTGTACGCAGATGTCCTTGAAGCGGCGGTCGGAGATGGGTTCTC
CCATCTTATCCAGCTGGGTGCGAAGTAGGTGCTTCTGGTTGAAGTAGTCG
TCGGGATTTTCACAAGGGTTCATGGGGTTGTTCTCCAGCTCCTCCATCTT
GGCCCTGATGACCTCGTCCGTTACCCTGTCATAGTTGTTGCAGAGCTCCT
CGAAGGCAGCTTGTCCGTCGCCGCTGATGCCAGTGTCGTCTTCGTGCTTC
TGTATCGACAAGGCGGCTGGAAGTTCCACTAGGAGGAAAAGAATGGCGTA
GAGATCTTCGTTTGCCCTTGTGTAGGAGTCGAAGGCCGCTGTGTCTGCGG
GATCTGGCTTCCTTTGTTTCTTCAGCAGTGGCAGGATGTCCTTCCTGGTC
ACACCTAACACCACGCAGAATTTCTTCATCCATGTCTTGAACTCAGCTGG
GTCCTTTCCGTCGAATTTCTTGAGGCCTTTGATCACGGTTGCCAGGTTCG
TAGAACTATCGCTGGCGAACGCGCTTCCACCTCCTGTGTTGCTCGTTGCA
GTATCCATTGCTCGTTCCAGCTTTATTTTCTTCGTCTTGATAAAAGTACT
TCCTGCTGTAGGAGTAAGTTTGCTCGTGTTACTACTGCCTGTA

protein sequence of EsuBft1039_3a-0001

>EsuBft1039_3 ID=EsuBft1039_3|Name=EsuBft1039_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MLLVGHEGSLARWLDVLLERDVEGAHALVSRILCEWNHLALDSDVRSALF
DDAAQSLVQEGGWRKNVATKPRNDESLNLTRNCCPRLYLTVQCRMPVAVP
LSWLSPATSTIFGEFRWV

mRNA from alignment at Scaffold_324:1134328..1135970+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1039_3a-0001 ID=EsuBft1039_3a-0001|Name=EsuBft1039_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1643bp|location=Sequence derived from alignment at Scaffold_324:1134328..1135970+ (Ectocarpus subulatus male Bft15b)
ACGGCGTTCGCCGTGTGGGTCTGTGAATGCTTCTGGTGGGGCACGAGGGA
TCTCTTGCCAGATGGCTGGACGTTCTGCTCGAACGTGATGTCGAGGGTGC
ACATGCCTTGGTCTCGCGGATCTTGTGTGAGTGGAATCACCTTGCCTTGG
ATAGTGATGTGCGGAGTGCTCTCTTCGACGACGCAGCGCAGTCCCTTGTT
CAGGAGGGAGGTTGGCGAAAAAATGTTGCGACCAAGCCCCGGAACGATGA
GTCCCTGAATCTGACGCGCAATTGCTGTCCTCGATTGTACTTGACGGTGC
AGTGTAGGATGCCCGTGGCCGTGCCTTTGAGTTGGCTTTCTCCGGCCACG
TCCACGATCTTTGGAGAGTTTCGCTGGGTGTAATCGTGGAGGTTTCCGTC
GGGGATGAGGCGATTGTCAAACATGGTCTCCGATACTCCCGTGTCTACCA
GGAGGCCTACCCCGGTGGAGCTCGCGGCGAAGTTGCGTCCTGAGATGCGG
GAACACGTGGCGAACATGAAGCCGCTGTCAAAGGCGTCCTCGTCCCGGGT
GAAGTCGACAACTGCCACTTCATTGTTTGAGTCGTGCTTGTTGGACGCCG
ACGAGCAGTGAGTGCAGTTGGAGCACGCGGTGAATGCTTTACTTGAGTCC
TTGGTGTCTTCCGGGCGCTTTCCTCCTTGCTGGTAGCATTCCTCGTCCGA
GTGAGACGTGGTGTTGTGCTTGGAGCACCACTTGGTAGCTCCGGCGGGCT
TCGTTTTCTTCATCGCCCTGTTCTTGATCTTGGGGCAGTTCCTCCTGATG
TGCCCCGGCTCGTAGCAGCTGTGGCAGATGATGTCAGACGCGGTCGTTGC
CATGGCAAATCCTCGACCAGCTATGCGTCCCTTCCATCCCTTGCGCGATT
GTTCGTCCAAGAAGATGTTGCGCATGGTGGATTGCATGTCCAGGACGTTG
AAGGTTGGGTCTCTGAACACCATCAGTTTGACGTCCTTGTATTCGTCGGA
GAAGCCCTGTACGCAGATGTCCTTGAAGCGGCGGTCGGAGATGGGTTCTC
CCATCTTATCCAGCTGGGTGCGAAGTAGGTGCTTCTGGTTGAAGTAGTCG
TCGGGATTTTCACAAGGGTTCATGGGGTTGTTCTCCAGCTCCTCCATCTT
GGCCCTGATGACCTCGTCCGTTACCCTGTCATAGTTGTTGCAGAGCTCCT
CGAAGGCAGCTTGTCCGTCGCCGCTGATGCCAGTGTCGTCTTCGTGCTTC
TGTATCGACAAGGCGGCTGGAAGTTCCACTAGGAGGAAAAGAATGGCGTA
GAGATCTTCGTTTGCCCTTGTGTAGGAGTCGAAGGCCGCTGTGTCTGCGG
GATCTGGCTTCCTTTGTTTCTTCAGCAGTGGCAGGATGTCCTTCCTGGTC
ACACCTAACACCACGCAGAATTTCTTCATCCATGTCTTGAACTCAGCTGG
GTCCTTTCCGTCGAATTTCTTGAGGCCTTTGATCACGGTTGCCAGGTTCG
TAGAACTATCGCTGGCGAACGCGCTTCCACCTCCTGTGTTGCTCGTTGCA
GTATCCATTGCTCGTTCCAGCTTTATTTTCTTCGTCTTGATAAAAGTACT
TCCTGCTGTAGGAGTAAGTTTGCTCGTGTTACTACTGCCTGTA

Coding sequence (CDS) from alignment at Scaffold_324:1134328..1135970+

>EsuBft1039_3a-0001 ID=EsuBft1039_3a-0001|Name=EsuBft1039_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_324:1134328..1135970+ (Ectocarpus subulatus male Bft15b)
ATGCTTCTGGTGGGGCACGAGGGATCTCTTGCCAGATGGCTGGACGTTCT
GCTCGAACGTGATGTCGAGGGTGCACATGCCTTGGTCTCGCGGATCTTGT
GTGAGTGGAATCACCTTGCCTTGGATAGTGATGTGCGGAGTGCTCTCTTC
GACGACGCAGCGCAGTCCCTTGTTCAGGAGGGAGGTTGGCGAAAAAATGT
TGCGACCAAGCCCCGGAACGATGAGTCCCTGAATCTGACGCGCAATTGCT
GTCCTCGATTGTACTTGACGGTGCAGTGTAGGATGCCCGTGGCCGTGCCT
TTGAGTTGGCTTTCTCCGGCCACGTCCACGATCTTTGGAGAGTTTCGCTG
GGTGTAA