EsuBft1039_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1039_2a-0001
Unique Name	EsuBft1039_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_324	contig	Scaffold_324:1132270..1134326 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4538.ORGLA02G0045100.1
ProteomeId	EsuBft1039_2
Protein domains	Coil
Protein domains	IPR001584
Protein domains	IPR012337
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	2057
Hectar predicted targeting category	other localisation
Evalue	3.92e-36
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M2IR@4447\|Liliopsida,3IKX9@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_2a	EsuBft1039_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_324 1132270..1134326 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_2a-0001-exon	EsuBft1039_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_324 1132270..1134326 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_2a-0001-exon	agat-three_prime_utr-368	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_324 1132270..1132623 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_2a-0001-cds	EsuBft1039_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_324 1132624..1134066 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_2a-0001-exon	agat-five_prime_utr-226	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_324 1134067..1134326 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1039_2a-0001	EsuBft1039_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_324 1132624..1134066 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_324:1132270..1134326-
coding sequence from alignment at Scaffold_324:1132270..1134326-

spliced messenger RNA

>EsuBft1039_2a-0001 ID=EsuBft1039_2a-0001|Name=EsuBft1039_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2057bp|location=Sequence derived from alignment at Scaffold_324:1132270..1134326- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTTTACGCTAGTGAGCGCGGACACCTAGCACAGGAGGCTTGGACATCT
CAATACTCGGAGCCTGGACATCCTTCAGAAGGACACGGGTACCGGGGTGG
ACTATCACGACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAAAGAC
AAGCAGTCCCCCCACCCGAAGCAATCGACTCGCGAACTATCACGGCCTGG
ACAGCTTGTGGTCATCGACAACATGGGGCCTGTTAATCCACCTGCGANGA
CTACACGAAGATGAAAGAAGTTTACCTGCTTCGCAAGAAATCTGACACGA
CCGAGGCGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTAC
CGGATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAACACCGGATTCGA
ATTTCGGGACTACTGCAAGAATTCAGTGATCAAGCTCGAATACGCCGCCA
CCAACACCCCTCAACAAATTGGTGTATCGGAACGGGACGGACAAACCCTG
GCCGGAGTCACCCGGTGTCTTCTGAAGGATGGAGATTTTCCGCCGTCCAT
GTGGGGGGAGTTAATGCTGACTGTAGCATACCTGTTGAACAGGTCCCCAC
ACTCAGCACTGGGAGGAGCTACGCCATACTCGAAGTTGCACAATAAGTCA
CCTGATCTCTCGGGACTTCGGGTCATTGGAGCGCGCGCCTTCGTACACCA
CGAGAGATACCGAAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTAT
GTGGTTTCGGCCTCGACAGCCAGACCTACCGGGTATTGAATCCATCCAAC
GGGGCCGTGGTCGAGAGCCGGAATGTGACTTTCATCGAATCTCCACCCCG
CTCAGTGCCCTTCCAGTATTCCACTGAAGCAAACGGGCAAGAGAGCGAAG
TGCTGAGCTTCACCTCCCTGCTGGACAGCCCCCGCTCGACGAGCGACCTG
GACTTCACGGCGCAGAACGAACTCCTTCGGCAAGAAGTCCGGAAGATGCA
GAAAGTCAATCTCGCTCGGGAGGAGCTTCGCCTAGAACTGGACGGGCACA
AGGATGAACATGGAAACGGGCAAGATTTCGGCGACGGGGACGCTCCATCA
CCACATCTCCCATCGACGCCAGCTGGACCGTCATCCGAGACCCACGCATC
TAGCCCCAGTCCATCATCGTCGAACCCGCCTGAACCGGACACTTCTGCAT
CAACTGGATCCTCCGGCATGCGGCGCCTGCAAGTCACCAGAGCCAGCACG
CGCGGGAAGCCCACCAGCGACGATCATATCGACGTCAACTTGGTTCCTGC
CAATCTGGAAGTCACCATGAACGACCGCGGTCGAGCCCATGCTACAACGG
GCCGCGTGGAGCCATCCGGTCTTTCCTTCACTCAGCTGGCTGAGATAGCC
GATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGGATTTCGCCCACGT
TGCGGAAGACCCCTTCACGGTGCCGCGTGCTCACGCCTACGTCACGACCA
CTCACGAACACCACGGGATCTTGGAGGAGACGAATCAAGCGATCAAAATC
CCCAACACCTACGACGAAGCCATGAGCTCTCCCCAGCGCGAAGAATGCAA
AGGAGCGTGCAGCAAGGAAATGGACAATCTGAGGAAACACAACGTCTACA
ATCTGGTGCCCCTCAGCAGCGTTCCCGAGGGAGAGAAGATCCTAGGAACG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTAGTCGGAGGACATCGTCAAGAGCCAGGACAGGACTACGGACGCAGCTA
CGCACCAGTATGCCGTATCGGGAGCATTCGCATGACGTGCACCATTGGCT
GCCACAACAACTGGCCCATCTACCAACTGGACGTTGTCGGTGCCTTCCTT
AACGCCCTCTGCGACAGAGATGTGTACGTCAGACCCGCCCCCGGTACATC
CGCCAAGAACTCCGAAACGGGAGAACCCATGGTGTACAAACTAGAACGGA
GCCTCTA

protein sequence of EsuBft1039_2a-0001

>EsuBft1039_2 ID=EsuBft1039_2|Name=EsuBft1039_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=481bp
MKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGFEFRD
YCKNSVIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGE
LMLTVAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY
RKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPPRSVP
FQYSTEANGQESEVLSFTSLLDSPRSTSDLDFTAQNELLRQEVRKMQKVN
LAREELRLELDGHKDEHGNGQDFGDGDAPSPHLPSTPAGPSSETHASSPS
PSSSNPPEPDTSASTGSSGMRRLQVTRASTRGKPTSDDHIDVNLVPANLE
VTMNDRGRAHATTGRVEPSGLSFTQLAEIADQAQLPCPGDTEDFAHVAED
PFTVPRAHAYVTTTHEHHGILEETNQAIKIPNTYDEAMSSPQREECKGAC
SKEMDNLRKHNVYNLVPLSSVPEGEKILGTX

mRNA from alignment at Scaffold_324:1132270..1134326-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1039_2a-0001 ID=EsuBft1039_2a-0001|Name=EsuBft1039_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2057bp|location=Sequence derived from alignment at Scaffold_324:1132270..1134326- (Ectocarpus subulatus male Bft15b)
TGCTTTACGCTAGTGAGCGCGGACACCTAGCACAGGAGGCTTGGACATCT
CAATACTCGGAGCCTGGACATCCTTCAGAAGGACACGGGTACCGGGGTGG
ACTATCACGACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAAAGAC
AAGCAGTCCCCCCACCCGAAGCAATCGACTCGCGAACTATCACGGCCTGG
ACAGCTTGTGGTCATCGACAACATGGGGCCTGTTAATCCACCTGCGANGA
CTACACGAAGATGAAAGAAGTTTACCTGCTTCGCAAGAAATCTGACACGA
CCGAGGCGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTAC
CGGATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAACACCGGATTCGA
ATTTCGGGACTACTGCAAGAATTCAGTGATCAAGCTCGAATACGCCGCCA
CCAACACCCCTCAACAAATTGGTGTATCGGAACGGGACGGACAAACCCTG
GCCGGAGTCACCCGGTGTCTTCTGAAGGATGGAGATTTTCCGCCGTCCAT
GTGGGGGGAGTTAATGCTGACTGTAGCATACCTGTTGAACAGGTCCCCAC
ACTCAGCACTGGGAGGAGCTACGCCATACTCGAAGTTGCACAATAAGTCA
CCTGATCTCTCGGGACTTCGGGTCATTGGAGCGCGCGCCTTCGTACACCA
CGAGAGATACCGAAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTAT
GTGGTTTCGGCCTCGACAGCCAGACCTACCGGGTATTGAATCCATCCAAC
GGGGCCGTGGTCGAGAGCCGGAATGTGACTTTCATCGAATCTCCACCCCG
CTCAGTGCCCTTCCAGTATTCCACTGAAGCAAACGGGCAAGAGAGCGAAG
TGCTGAGCTTCACCTCCCTGCTGGACAGCCCCCGCTCGACGAGCGACCTG
GACTTCACGGCGCAGAACGAACTCCTTCGGCAAGAAGTCCGGAAGATGCA
GAAAGTCAATCTCGCTCGGGAGGAGCTTCGCCTAGAACTGGACGGGCACA
AGGATGAACATGGAAACGGGCAAGATTTCGGCGACGGGGACGCTCCATCA
CCACATCTCCCATCGACGCCAGCTGGACCGTCATCCGAGACCCACGCATC
TAGCCCCAGTCCATCATCGTCGAACCCGCCTGAACCGGACACTTCTGCAT
CAACTGGATCCTCCGGCATGCGGCGCCTGCAAGTCACCAGAGCCAGCACG
CGCGGGAAGCCCACCAGCGACGATCATATCGACGTCAACTTGGTTCCTGC
CAATCTGGAAGTCACCATGAACGACCGCGGTCGAGCCCATGCTACAACGG
GCCGCGTGGAGCCATCCGGTCTTTCCTTCACTCAGCTGGCTGAGATAGCC
GATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGGATTTCGCCCACGT
TGCGGAAGACCCCTTCACGGTGCCGCGTGCTCACGCCTACGTCACGACCA
CTCACGAACACCACGGGATCTTGGAGGAGACGAATCAAGCGATCAAAATC
CCCAACACCTACGACGAAGCCATGAGCTCTCCCCAGCGCGAAGAATGCAA
AGGAGCGTGCAGCAAGGAAATGGACAATCTGAGGAAACACAACGTCTACA
ATCTGGTGCCCCTCAGCAGCGTTCCCGAGGGAGAGAAGATCCTAGGAACG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTAGTCGGAGGACATCGTCAAGAGCCAGGACAGGACTACGGACGCAGCTA
CGCACCAGTATGCCGTATCGGGAGCATTCGCATGACGTGCACCATTGGCT
GCCACAACAACTGGCCCATCTACCAACTGGACGTTGTCGGTGCCTTCCTT
AACGCCCTCTGCGACAGAGATGTGTACGTCAGACCCGCCCCCGGTACATC
CGCCAAGAACTCCGAAACGGGAGAACCCATGGTGTACAAACTAGAACGGA
GCCTCTA

Coding sequence (CDS) from alignment at Scaffold_324:1132270..1134326-

>EsuBft1039_2a-0001 ID=EsuBft1039_2a-0001|Name=EsuBft1039_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1443bp|location=Sequence derived from alignment at Scaffold_324:1132270..1134326- (Ectocarpus subulatus male Bft15b)
ATGAAAGAAGTTTACCTGCTTCGCAAGAAATCTGACACGACCGAGGCGGT
GCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTACCGGATCGAGA
CCATCCGCTGCGACAAGGGAGGCGAGAACACCGGATTCGAATTTCGGGAC
TACTGCAAGAATTCAGTGATCAAGCTCGAATACGCCGCCACCAACACCCC
TCAACAAATTGGTGTATCGGAACGGGACGGACAAACCCTGGCCGGAGTCA
CCCGGTGTCTTCTGAAGGATGGAGATTTTCCGCCGTCCATGTGGGGGGAG
TTAATGCTGACTGTAGCATACCTGTTGAACAGGTCCCCACACTCAGCACT
GGGAGGAGCTACGCCATACTCGAAGTTGCACAATAAGTCACCTGATCTCT
CGGGACTTCGGGTCATTGGAGCGCGCGCCTTCGTACACCACGAGAGATAC
CGAAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTATGTGGTTTCGG
CCTCGACAGCCAGACCTACCGGGTATTGAATCCATCCAACGGGGCCGTGG
TCGAGAGCCGGAATGTGACTTTCATCGAATCTCCACCCCGCTCAGTGCCC
TTCCAGTATTCCACTGAAGCAAACGGGCAAGAGAGCGAAGTGCTGAGCTT
CACCTCCCTGCTGGACAGCCCCCGCTCGACGAGCGACCTGGACTTCACGG
CGCAGAACGAACTCCTTCGGCAAGAAGTCCGGAAGATGCAGAAAGTCAAT
CTCGCTCGGGAGGAGCTTCGCCTAGAACTGGACGGGCACAAGGATGAACA
TGGAAACGGGCAAGATTTCGGCGACGGGGACGCTCCATCACCACATCTCC
CATCGACGCCAGCTGGACCGTCATCCGAGACCCACGCATCTAGCCCCAGT
CCATCATCGTCGAACCCGCCTGAACCGGACACTTCTGCATCAACTGGATC
CTCCGGCATGCGGCGCCTGCAAGTCACCAGAGCCAGCACGCGCGGGAAGC
CCACCAGCGACGATCATATCGACGTCAACTTGGTTCCTGCCAATCTGGAA
GTCACCATGAACGACCGCGGTCGAGCCCATGCTACAACGGGCCGCGTGGA
GCCATCCGGTCTTTCCTTCACTCAGCTGGCTGAGATAGCCGATCAAGCCC
AGCTCCCATGCCCTGGCGATACTGAGGATTTCGCCCACGTTGCGGAAGAC
CCCTTCACGGTGCCGCGTGCTCACGCCTACGTCACGACCACTCACGAACA
CCACGGGATCTTGGAGGAGACGAATCAAGCGATCAAAATCCCCAACACCT
ACGACGAAGCCATGAGCTCTCCCCAGCGCGAAGAATGCAAAGGAGCGTGC
AGCAAGGAAATGGACAATCTGAGGAAACACAACGTCTACAATCTGGTGCC
CCTCAGCAGCGTTCCCGAGGGAGAGAAGATCCTAGGAACGNNN