EsuBft1038_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1038_5a-0001
Unique NameEsuBft1038_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_640contigScaffold_640:48181..49974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
SymbolkatG
StatusManually annotated
Seed ortholog2880.D7G523
ProteomeIdEsuBft1038_5
Protein domainsTMhelix
Protein domainsPS51257
Protein domainsIPR010255
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR002016
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR019793
Protein domainsG3DSA
Protein domainsSIGNAL_PEPTIDE
Protein domainsPTHR30555
Protein domainsIPR002207
Protein domainsSignalP-noTM
Protein domainsIPR019794
Ownerapollo_admin@sb-roscoff.fr
Notecatalase-peroxidase os:escherichia coli gn:katg pe:3 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length810
Hectar predicted targeting categorysignal peptide
Evalue7.4e-153
EggNOG OGsCOG0685@1|root,2QTDY@2759|Eukaryota
Date last modified2016-08-23
Date creation2016-06-13
Preferred namekatG
KEGG rclassRC00034,RC00213,RC00767,RC02141
KEGG koko:K03782
KEGG ReactionR00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906
KEGG Pathwayko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110
GOsGO:0000003,GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009267,GO:0009408,GO:0009605,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019953,GO:0020037,GO:0022414,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034599,GO:0034605,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042594,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051704,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0071496,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748
EC1.11.1.21
Descriptioncatalase-peroxidase
Descriptioncatalase activity
COG categoryE
BRITEko00000,ko00001,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0004601
GO0020037
EC1.11.1.21
GO0055114
GO0006979
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1038_5aEsuBft1038_5aEctocarpus subulatus male Bft15bgeneScaffold_640 48181..49974 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1038_5a-0001-exonagat-exon-88578Ectocarpus subulatus male Bft15bexonScaffold_640 48181..48273 +
EsuBft1038_5a-0001-exonagat-exon-88579Ectocarpus subulatus male Bft15bexonScaffold_640 48734..49307 +
EsuBft1038_5a-0001-exonEsuBft1038_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_640 49832..49974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1038_5a-0001-cdsEsuBft1038_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_640 48181..48273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1038_5a-0001EsuBft1038_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_640 48181..49974 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1038_5a-0001 ID=EsuBft1038_5a-0001|Name=EsuBft1038_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=810bp|location=Sequence derived from alignment at Scaffold_640:48181..49974+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCACAAGTGTAAGCTCGGGGTCCTGGCCGCGTTGGCGTTCATCGC
TTCGCCTGCATCTGCCGGCTGCCCGTTCCTCTCTGGCGAAAAGGGCTCGC
AAGCCGACCTGAACCCCAGCGTGGACCGTGCTCTGGGGTCCTACGAGGAT
GACAGCAGCTACTACGGAGGGGCGGACTTCTCCCGCGAGACCTACGAGGC
TCTTCAAGAGGACATCACGGCCATGTTCACCAACTCCATGGAGTTCTGGC
CGGCCGACTTCGGCAACTACGCTCCCCTGATGATCCGCCTCGCCTGGCAC
TGCAGCGGCACCTACCGCCAGTCGGACGGCCGCGGCGGCTGCGACGGTGG
CCGGATCCGCTTCAACCCGGAACGCAGCTGGGCGGATAACATCAACCTGG
ACAAGGCGCTGACGCTCCTGCAGCCCGTCAAGCTCAAGTACGGCGACGCC
GTCTCGTGGGGAGACCTCATCACCCTGACGGGGAACGAGGCGATCCGGTC
GATGGGCGGGCCCGTGCTGGGGTTCTGCGCCGGAAGGCTTGATGATGCCA
ACGGCGTGGACAGCCTCGCGCTGGGCCCCTCTGACGAGCAGGAGGCCGTC
GCTCCTTGCGCCGTGAACGGGACTTGCGAAGCCCCTCTTGGCACCAGCAC
GGTGGGCTTGATCTACGTGAACCCCGAGGGGCCCTCCGGCGTTCCAGACC
CCGCGGGCAGCGCTGAAAGCATTCGGGATATCTTCGGGCGGATGGGCATG
AACGACAGCGAGACAGTGGCTCTCATCGGTGGAGGGCACGCCTTCGGTGG
GTTAACGTAG
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protein sequence of EsuBft1038_5a-0001

>EsuBft1038_5 ID=EsuBft1038_5|Name=EsuBft1038_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=269bp
MRHKCKLGVLAALAFIASPASAGCPFLSGEKGSQADLNPSVDRALGSYED
DSSYYGGADFSRETYEALQEDITAMFTNSMEFWPADFGNYAPLMIRLAWH
CSGTYRQSDGRGGCDGGRIRFNPERSWADNINLDKALTLLQPVKLKYGDA
VSWGDLITLTGNEAIRSMGGPVLGFCAGRLDDANGVDSLALGPSDEQEAV
APCAVNGTCEAPLGTSTVGLIYVNPEGPSGVPDPAGSAESIRDIFGRMGM
NDSETVALIGGGHAFGGLT
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mRNA from alignment at Scaffold_640:48181..49974+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1038_5a-0001 ID=EsuBft1038_5a-0001|Name=EsuBft1038_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1794bp|location=Sequence derived from alignment at Scaffold_640:48181..49974+ (Ectocarpus subulatus male Bft15b)
ATGCGTCACAAGTGTAAGCTCGGGGTCCTGGCCGCGTTGGCGTTCATCGC
TTCGCCTGCATCTGCCGGCTGCCCGTTCCTCTCTGGCGAAAAGGTAAGGT
ATTATCATGCGTGTAGTGCGGACGGACGCATACCCTCGATGTAGAAACTA
CGAGTTTGTTTTTTGTGTGCTTTTCGTTTACTCCAGCTGTGGGCGGCGGG
AAACTGAACAAGTTTGGGTCAAATGAGAAATCATCGGGAACTGCCGTAGC
GTGTCGTTTCGGCGTTGCTACTGCTATTTTCAACCCACGTTACTTACTTG
CTGGGGGAAAGTGTTTTTCGTGCCATTCGTTCGCTCTGTCACGCTGTAGT
GGTGGGGCGCAGGTGCTTTGCCCGTTCTGTTTTGGATCGGGCAAAATGCC
TCGAGCGTCGAATCGTCGCACATCAACGGGGATTATCACACCGAATCTTT
CACCAGGCTTCCCGGTAAAATACACTGGACAACGTTGTGTGTGCACCTCC
CTCCAACCTCCAACCGCCTCTCCGCCCTGCCCTCCCGTACCCACGCTCCA
CAGGGCTCGCAAGCCGACCTGAACCCCAGCGTGGACCGTGCTCTGGGGTC
CTACGAGGATGACAGCAGCTACTACGGAGGGGCGGACTTCTCCCGCGAGA
CCTACGAGGCTCTTCAAGAGGACATCACGGCCATGTTCACCAACTCCATG
GAGTTCTGGCCGGCCGACTTCGGCAACTACGCTCCCCTGATGATCCGCCT
CGCCTGGCACTGCAGCGGCACCTACCGCCAGTCGGACGGCCGCGGCGGCT
GCGACGGTGGCCGGATCCGCTTCAACCCGGAACGCAGCTGGGCGGATAAC
ATCAACCTGGACAAGGCGCTGACGCTCCTGCAGCCCGTCAAGCTCAAGTA
CGGCGACGCCGTCTCGTGGGGAGACCTCATCACCCTGACGGGGAACGAGG
CGATCCGGTCGATGGGCGGGCCCGTGCTGGGGTTCTGCGCCGGAAGGCTT
GATGATGCCAACGGCGTGGACAGCCTCGCGCTGGGCCCCTCTGACGAGCA
GGAGGCCGTCGCTCCTTGCGCCGTGAACGGGACTTGCGAAGCCCCTCTTG
GCACCAGCACGGTGGGCTTGATCTACGGTGAGCAGTCTACTCCTGTAATT
CGTTTTTTGTGGCAATAGTTGGTGATATATTAAAGCCGCAAAGCTCCAAC
ACACCAGAAGCCTTCAAGGTTGGTTTGGCTTTTGAAGGCACTTACCCCAA
CAACCTAGAGCAAGTGTTGGAGCTTGCCCCCCCTTCAGCGACGTGTACCA
TAACACACGATTTCATGATTTCGACGGCGTCAAACACGCGGGGCCCCGAT
CTCGCGACACTCCCGAGGACTCACGATCATATCTCCGTCCGCCAGCCAAG
CTAGATAGCCTTAGCTCGGGTATTGTTCAGTACTATTGACGAGTCAACCA
TTCCTTATGACCGTCGTAGAACCACGTACAACCTCGGAAGGCGTCCGCAT
CAGTTGGGCCCGTACGGACAATGGAATCTACGGAGCGGAGACCGTAGCGT
TTTTGTTAATGTCGACAACAATATCACGTTTCTGACGCATAATCACTCCA
ATGTACCTCCCCATTTGAACCCCTTACTGCAATTGTTTGGATGTACCCCA
GTGAACCCCGAGGGGCCCTCCGGCGTTCCAGACCCCGCGGGCAGCGCTGA
AAGCATTCGGGATATCTTCGGGCGGATGGGCATGAACGACAGCGAGACAG
TGGCTCTCATCGGTGGAGGGCACGCCTTCGGTGGGTTAACGTAG
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Coding sequence (CDS) from alignment at Scaffold_640:48181..49974+

>EsuBft1038_5a-0001 ID=EsuBft1038_5a-0001|Name=EsuBft1038_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=810bp|location=Sequence derived from alignment at Scaffold_640:48181..49974+ (Ectocarpus subulatus male Bft15b)
ATGCGTCACAAGTGTAAGCTCGGGGTCCTGGCCGCGTTGGCGTTCATCGC
TTCGCCTGCATCTGCCGGCTGCCCGTTCCTCTCTGGCGAAAAGGGCTCGC
AAGCCGACCTGAACCCCAGCGTGGACCGTGCTCTGGGGTCCTACGAGGAT
GACAGCAGCTACTACGGAGGGGCGGACTTCTCCCGCGAGACCTACGAGGC
TCTTCAAGAGGACATCACGGCCATGTTCACCAACTCCATGGAGTTCTGGC
CGGCCGACTTCGGCAACTACGCTCCCCTGATGATCCGCCTCGCCTGGCAC
TGCAGCGGCACCTACCGCCAGTCGGACGGCCGCGGCGGCTGCGACGGTGG
CCGGATCCGCTTCAACCCGGAACGCAGCTGGGCGGATAACATCAACCTGG
ACAAGGCGCTGACGCTCCTGCAGCCCGTCAAGCTCAAGTACGGCGACGCC
GTCTCGTGGGGAGACCTCATCACCCTGACGGGGAACGAGGCGATCCGGTC
GATGGGCGGGCCCGTGCTGGGGTTCTGCGCCGGAAGGCTTGATGATGCCA
ACGGCGTGGACAGCCTCGCGCTGGGCCCCTCTGACGAGCAGGAGGCCGTC
GCTCCTTGCGCCGTGAACGGGACTTGCGAAGCCCCTCTTGGCACCAGCAC
GGTGGGCTTGATCTACGTGAACCCCGAGGGGCCCTCCGGCGTTCCAGACC
CCGCGGGCAGCGCTGAAAGCATTCGGGATATCTTCGGGCGGATGGGCATG
AACGACAGCGAGACAGTGGCTCTCATCGGTGGAGGGCACGCCTTCGGTGG
GTTAACGTAG
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