EsuBft1038_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1038_4a-0001
Unique Name	EsuBft1038_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_640	contig	Scaffold_640:43656..45049 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FXD3
ProteomeId	EsuBft1038_4
Protein domains	IPR004875
Protein domains	PTHR19303
Owner	apollo_admin@sb-roscoff.fr
Note	pogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	1192
Hectar predicted targeting category	other localisation
Evalue	2.07e-73
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	POGK
KEGG ko	ko:K09228
Description	DNA binding
COG category	CH
BRITE	ko00000,ko03000

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1038_4a	EsuBft1038_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_640 43656..45049 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1038_4a-0001	EsuBft1038_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_640 43676..44698 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1038_4a-0001-exon	EsuBft1038_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_640 43656..44788 +
EsuBft1038_4a-0001-exon	agat-exon-88577	Ectocarpus subulatus male Bft15b	exon	Scaffold_640 44991..45049 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1038_4a-0001-exon	agat-five_prime_utr-225	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_640 43656..43675 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1038_4a-0001-cds	EsuBft1038_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_640 43676..44698 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1038_4a-0001-exon	agat-three_prime_utr-365	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_640 44699..44788 +
EsuBft1038_4a-0001-exon	agat-three_prime_utr-366	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_640 44991..45049 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_640:43656..45049+
coding sequence from alignment at Scaffold_640:43656..45049+

spliced messenger RNA

>EsuBft1038_4a-0001 ID=EsuBft1038_4a-0001|Name=EsuBft1038_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1192bp|location=Sequence derived from alignment at Scaffold_640:43656..45049+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAAAGAGGAGGAACGCTTCATGCTCGTTCTGGCTGTCATGGCGGACGGC
AAAAAGGTTTCACCGCGCATCATCTTCAAGGGCACGCCGTTCACCTCCCC
AACCGTGAGCGGCAATGGGAAGAGCACCCTGCCGCGGAAGAACTCCGTCG
CGTGGGAGATCCATCCTGCGAACCGCGCCAAGCACGGCCACCCTGCCAAC
GGCATGTCCTTCGGCGTGCAGGAGAAGAGCTGGAGTGACCAGCGGGAGTG
CAACGGGTGGACCTCGGGCAGCTGGAAGCTCCGTCCCAACAACGGCAGCA
TCGTCCAGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCCAC
AAGGACGAGGGTTTCATCGCCGCCCTCAAGAGAGACGCCAACACCATCGT
CATCTTCATCCCAGGCGGGTTGACGCCCTTACTCCAACCGCTCGACCTCA
ACAAGCAGATGAAGCGGCTGCTGCGGGGCAAGCACACCGCCTACAGCTCG
TCGGCGGTCGCAGACGCCCGGTCGGGTAAGCTGAAGCCACCGGAGCGTGG
GATCGTCTCTACGTGGTGCAAGGAAGAGTGGGAGTCCATCACCCCCGAGA
CGGTGAAGACTTGCTTTAAGATCTGTGGTCTCACGCTCGCGCTCGACGGC
AGCGAAGACCACGCCTGGTGCGCGCACAACTTCGGGGAAGACTACCGCGA
CCTTCTCGAGGAGCAGCACGCCGTGTGGCTCGCTGAGCACCCCAATGTGA
CTCTCCCGCCGCTCAAGCTGCCGAAGGTACCAGGGGGGTTCGACTCCAAC
CCCATCACGGCTGCTCAGAAGGAGGTCGAGGGGAAGTTGCTGCCTACGTC
GCTGATGGGAGCGACAGCGAGGTGGAGGTCGTGGAGGGCGACAGCGACGT
GGAAGTCGTGGAGGGGCAGGAGGGGGGGTCTCCGAAGGAGAAGTAATCGA
AGTTTGAATCATAGTTCTTTGGGATTGCCAGTGAGATTGGATGTGTTTGC
GATGGTAGGGGCGCGGGCACGAAGTAGAGTTCAACCCGCCTAGGTAATAC
AGTAGTAGGACGTTGGTAGCTCGTAGTGGTAGTTTGGTGTGATTTATTAC
TTCGTTTTAGGTTTCATCTGCGTTTAGATTTTTTTGTTGAGTGGATGCCG
TTTGCCGATTTGCAGATCTTGATTCTTCAGAACGAAAAGACG

protein sequence of EsuBft1038_4a-0001

>EsuBft1038_4 ID=EsuBft1038_4|Name=EsuBft1038_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=340bp
MLVLAVMADGKKVSPRIIFKGTPFTSPTVSGNGKSTLPRKNSVAWEIHPA
NRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPC
ILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDLNKQMKRL
LRGKHTAYSSSAVADARSGKLKPPERGIVSTWCKEEWESITPETVKTCFK
ICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKL
PKVPGGFDSNPITAAQKEVEGKLLPTSLMGATARWRSWRATATWKSWRGR
RGGLRRRSNRSLNHSSLGLPVRLDVFAMVGARARSRVQPA

mRNA from alignment at Scaffold_640:43656..45049+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1038_4a-0001 ID=EsuBft1038_4a-0001|Name=EsuBft1038_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1394bp|location=Sequence derived from alignment at Scaffold_640:43656..45049+ (Ectocarpus subulatus male Bft15b)
GCAAAGAGGAGGAACGCTTCATGCTCGTTCTGGCTGTCATGGCGGACGGC
AAAAAGGTTTCACCGCGCATCATCTTCAAGGGCACGCCGTTCACCTCCCC
AACCGTGAGCGGCAATGGGAAGAGCACCCTGCCGCGGAAGAACTCCGTCG
CGTGGGAGATCCATCCTGCGAACCGCGCCAAGCACGGCCACCCTGCCAAC
GGCATGTCCTTCGGCGTGCAGGAGAAGAGCTGGAGTGACCAGCGGGAGTG
CAACGGGTGGACCTCGGGCAGCTGGAAGCTCCGTCCCAACAACGGCAGCA
TCGTCCAGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCCAC
AAGGACGAGGGTTTCATCGCCGCCCTCAAGAGAGACGCCAACACCATCGT
CATCTTCATCCCAGGCGGGTTGACGCCCTTACTCCAACCGCTCGACCTCA
ACAAGCAGATGAAGCGGCTGCTGCGGGGCAAGCACACCGCCTACAGCTCG
TCGGCGGTCGCAGACGCCCGGTCGGGTAAGCTGAAGCCACCGGAGCGTGG
GATCGTCTCTACGTGGTGCAAGGAAGAGTGGGAGTCCATCACCCCCGAGA
CGGTGAAGACTTGCTTTAAGATCTGTGGTCTCACGCTCGCGCTCGACGGC
AGCGAAGACCACGCCTGGTGCGCGCACAACTTCGGGGAAGACTACCGCGA
CCTTCTCGAGGAGCAGCACGCCGTGTGGCTCGCTGAGCACCCCAATGTGA
CTCTCCCGCCGCTCAAGCTGCCGAAGGTACCAGGGGGGTTCGACTCCAAC
CCCATCACGGCTGCTCAGAAGGAGGTCGAGGGGAAGTTGCTGCCTACGTC
GCTGATGGGAGCGACAGCGAGGTGGAGGTCGTGGAGGGCGACAGCGACGT
GGAAGTCGTGGAGGGGCAGGAGGGGGGGTCTCCGAAGGAGAAGTAATCGA
AGTTTGAATCATAGTTCTTTGGGATTGCCAGTGAGATTGGATGTGTTTGC
GATGGTAGGGGCGCGGGCACGAAGTAGAGTTCAACCCGCCTAGGTAATAC
AGTAGTAGGACGTTGGTAGCTCGTAGTGGTAGTTTGGTGTGATTTATTAC
TTCGTTTTAGGTTTCATCTGCGTTTAGATTTTTGTTTTTTTGCCTTCCGA
CAATTGCAGATGTANAGTAGAGTTCAACCCGCCTAGGTAATACAGTAGTA
GGACGTTGGTAGCTCGTAGTGGTAGTTTGGTGTGATTTATTACTTCGTTT
TAGGTTTCATCTGCGTTTAGATTTTTGTTTTTTTGCCTTCCGACAATTGC
AGATGTACCTCAGAAAACTTTCAATTAATTTAGAGTTGTTGAGTGGATGC
CGTTTGCCGATTTGCAGATCTTGATTCTTCAGAACGAAAAGACG

Coding sequence (CDS) from alignment at Scaffold_640:43656..45049+

>EsuBft1038_4a-0001 ID=EsuBft1038_4a-0001|Name=EsuBft1038_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1023bp|location=Sequence derived from alignment at Scaffold_640:43656..45049+ (Ectocarpus subulatus male Bft15b)
ATGCTCGTTCTGGCTGTCATGGCGGACGGCAAAAAGGTTTCACCGCGCAT
CATCTTCAAGGGCACGCCGTTCACCTCCCCAACCGTGAGCGGCAATGGGA
AGAGCACCCTGCCGCGGAAGAACTCCGTCGCGTGGGAGATCCATCCTGCG
AACCGCGCCAAGCACGGCCACCCTGCCAACGGCATGTCCTTCGGCGTGCA
GGAGAAGAGCTGGAGTGACCAGCGGGAGTGCAACGGGTGGACCTCGGGCA
GCTGGAAGCTCCGTCCCAACAACGGCAGCATCGTCCAGCAGCGCCCGTGC
ATCCTGGTGCTGGACGACTTCAAGTGCCACAAGGACGAGGGTTTCATCGC
CGCCCTCAAGAGAGACGCCAACACCATCGTCATCTTCATCCCAGGCGGGT
TGACGCCCTTACTCCAACCGCTCGACCTCAACAAGCAGATGAAGCGGCTG
CTGCGGGGCAAGCACACCGCCTACAGCTCGTCGGCGGTCGCAGACGCCCG
GTCGGGTAAGCTGAAGCCACCGGAGCGTGGGATCGTCTCTACGTGGTGCA
AGGAAGAGTGGGAGTCCATCACCCCCGAGACGGTGAAGACTTGCTTTAAG
ATCTGTGGTCTCACGCTCGCGCTCGACGGCAGCGAAGACCACGCCTGGTG
CGCGCACAACTTCGGGGAAGACTACCGCGACCTTCTCGAGGAGCAGCACG
CCGTGTGGCTCGCTGAGCACCCCAATGTGACTCTCCCGCCGCTCAAGCTG
CCGAAGGTACCAGGGGGGTTCGACTCCAACCCCATCACGGCTGCTCAGAA
GGAGGTCGAGGGGAAGTTGCTGCCTACGTCGCTGATGGGAGCGACAGCGA
GGTGGAGGTCGTGGAGGGCGACAGCGACGTGGAAGTCGTGGAGGGGCAGG
AGGGGGGGTCTCCGAAGGAGAAGTAATCGAAGTTTGAATCATAGTTCTTT
GGGATTGCCAGTGAGATTGGATGTGTTTGCGATGGTAGGGGCGCGGGCAC
GAAGTAGAGTTCAACCCGCCTAG