EsuBft1036_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1036_8a-0001
Unique NameEsuBft1036_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_73contigScaffold_73:38484..43498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIB9
ProteomeIdEsuBft1036_8
Protein domainsPF13489
Protein domainsIPR029063
Protein domainsPTHR10108
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized methyltransferase os:schizosaccharomyces pombe (strain 972 atcc 24843) gn: pe:3 sv:1 [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length1189
Hectar predicted targeting categoryother localisation
Evalue5.15e-233
EggNOG OGs2AQCE@1|root,2RZIN@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-11_001320.1
Date last modified2016-06-14
Date creation2016-06-14
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044464
DescriptionMethyltransferase domain
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0030638
GO1901661
GO0006807
GO0017000
GO0016740
GO0016137
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_8aEsuBft1036_8aEctocarpus subulatus male Bft15bgeneScaffold_73 38484..43498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_8a-0001EsuBft1036_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_73 38617..43498 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_8a-0001-exonagat-exon-26875Ectocarpus subulatus male Bft15bexonScaffold_73 38484..38804 -
EsuBft1036_8a-0001-exonagat-exon-26871Ectocarpus subulatus male Bft15bexonScaffold_73 39280..39415 -
EsuBft1036_8a-0001-exonagat-exon-26874Ectocarpus subulatus male Bft15bexonScaffold_73 39946..40093 -
EsuBft1036_8a-0001-exonagat-exon-26873Ectocarpus subulatus male Bft15bexonScaffold_73 41001..41302 -
EsuBft1036_8a-0001-exonagat-exon-26876Ectocarpus subulatus male Bft15bexonScaffold_73 42264..42390 -
EsuBft1036_8a-0001-exonagat-exon-26872Ectocarpus subulatus male Bft15bexonScaffold_73 43285..43394 -
EsuBft1036_8a-0001-exonEsuBft1036_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_73 43454..43498 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_8a-0001-exonagat-three_prime_utr-347Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_73 38484..38616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_8a-0001-cdsEsuBft1036_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_73 38617..38804 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1036_8a-0001 ID=EsuBft1036_8a-0001|Name=EsuBft1036_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1189bp|location=Sequence derived from alignment at Scaffold_73:38484..43498- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCGACCTCTGAGCTCACGTTTGTCTTGGGGCGCTTTGTCGTTCA
CGGGGCCCGGACTAAGGCGGAAGACTGGGACGCGGAACGCTACTCCACCA
ACGCAGCCTTCGTCCCCGAGCTAGGCAAAAACCTTTTGGACTTACTAGCG
CCAAGGGTCGGGGAACGCATTCTGGACGTCGGGTGCGGGGATGGCGTCTT
GACCGCGGAGATCAAGGCCAGGGGCTGCAGGGTGGTGGGCATAGACTTCG
CCCCCGACATGGTCGACGCGGCTGCCAGAAAGGATATCGAAGCGTACGTC
ATGGATGCGTCGGCCATCAACGCCCCGTTCCTCCTCGCGAAGCTCTCCGC
CCACGACCACAACGACAACTGCAGCAGCCCTCCCTCGCCTCCGTCCCAAA
CGACAGCCACGGAGGGAGATCCCGCCGCCCCGCTGCCCCCCCCCCACAGA
GAGGGCAACAGAGCAGAGAGGGGAGAGGCGCCAGTGGCGTTCGACGCTGT
GTTCACGAATGCCGCTCTGCACTGGGTCAGGGCGCCGCAGACTGTGATCG
AGGGGGCCAAGCGGGTCCTGAGACCAGGGGGAAGGTTTGTGGGAGAGTTT
GGAGGCCACGGAAACATGGCGGCGGTCCGAGTTGCCATGCACGCTGCCTT
GTGGAGGAGAGGGGTGGATCCCTTGGCCGTTGATCCGTGGTACTTTCCGA
CGCCGCGCGAGTATCGACAGCTGCTAGAGGCGGCCGGTTTTATCGTCGAT
GACGTTTGGCTCGTGCCGCGGCCCACAGTCCTGCCGGCGGGAACCGGCAT
GCGTGGGTGGCTTTCCACCTTCACGAAGGCGTTCCTGAACGCGATACCGG
AGGAAGCTTCAAGCAACCGCGGCACGACCAATGAGAACGGTCTGACCCAG
ACCAAGGCCACGGTGGTCGACGAGGCCCTCGCAGCCTTGCAGCCCGCGCT
GCGAGACAAGGACGGCTTCTGGACCGCGGACTACGTGCGCCTACGCTTTA
GGGCACACCTTCCTCACGACAGCGCCAGCGGCACGGGAGTGGAGAGAACA
TATTAAGGCTGAACATAAGGGTTTGCTCGTGTTGTTAGTATTTGGTCCCG
CGAAGAAGCGCGGACGAAACGAGTAGTGCCGTCAAGTTCTGGCGCGCTCT
CCCCCTGGTTGCTTTTTGGCTGTTTGGCAGATAGGAAGC
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protein sequence of EsuBft1036_8a-0001

>EsuBft1036_8 ID=EsuBft1036_8|Name=EsuBft1036_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=351bp
MTSTSELTFVLGRFVVHGARTKAEDWDAERYSTNAAFVPELGKNLLDLLA
PRVGERILDVGCGDGVLTAEIKARGCRVVGIDFAPDMVDAAARKDIEAYV
MDASAINAPFLLAKLSAHDHNDNCSSPPSPPSQTTATEGDPAAPLPPPHR
EGNRAERGEAPVAFDAVFTNAALHWVRAPQTVIEGAKRVLRPGGRFVGEF
GGHGNMAAVRVAMHAALWRRGVDPLAVDPWYFPTPREYRQLLEAAGFIVD
DVWLVPRPTVLPAGTGMRGWLSTFTKAFLNAIPEEASSNRGTTNENGLTQ
TKATVVDEALAALQPALRDKDGFWTADYVRLRFRAHLPHDSASGTGVERT
Y
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mRNA from alignment at Scaffold_73:38484..43498-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1036_8a-0001 ID=EsuBft1036_8a-0001|Name=EsuBft1036_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5015bp|location=Sequence derived from alignment at Scaffold_73:38484..43498- (Ectocarpus subulatus male Bft15b)
ATGACCTCGACCTCTGAGCTCACGTTTGTCTTGGGGCGCTTTGTCGTGAT
GGCTTTTTTGGTCTTTGGTATGTGCAACACGGGTGTTGGATCATTTTCGC
ACAGGTTCACGGGGCCCGGACTAAGGCGGAAGACTGGGACGCGGAACGCT
ACTCCACCAACGCAGCCTTCGTCCCCGAGCTAGGCAAAAACCTTTTGGAC
TTACTAGCGCCAAGGTGAGCCGCCGCCGCCGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTACTGCTGCTGCTGCTGCTACAGCACCCCTGGCCTTTCATA
CGGTGATGCCTGTCGAGGCCTTGTTGGACTATTGAACGGGGGGGGTCCCC
CCCAGATTGCTGGGTGATGCTTCTCAATCTGAATCTCGTACTTGCTGCTG
CGTGTGATTGTCTCTAGGCAGCCCTAACTGGTGCACGCCACATGGACCAG
TTTTAGTGGTCAGCCCGGCGGCTGCAGCACCCTCCACCCGCCGGCCACTA
TCCACCTGTCGTATCTTCCGTTATCATCCGGTCCCTTTCGGCCGGATCTA
TTACTACAGACGTCCGTGAAAAGCTGTCGGGCGAGAATTTGCGGGGGTTC
CGATATGTTTTTGCGGCAGCGGTGCTGAGAGTAATCGCATCCGCTTCGCA
TATGAAAAAAAATGACGGTGCCAGCGGTGTACCGAGCGTTCAACTCACTT
TCCGCAAGCCTCAGCGCACAAGCTGCAGGTTCTGTCCAGGTTGTGTAGAG
GTGCAGTACCGCAATAACTTTCTGCCCTTAGCGCTAGGTCCCGACATGGG
TGCGGATGATCGACGTCTCAGATTTGCCGAATCACAACATTTCTTAGTTC
TTCTGCCATGCAGTTCTTCGGCAGCATCGGCGTCATGAAATAATTTTGTG
AACTATTGAGTCCGGGTACAAACGCGGCTTCGTTCAAGTCTCCCACTACA
CGGCTAGCCTTAGGATAACCTGAGGTTAATTCGTTGTTTCATTTTGGTTC
CCCGTGTTTGTATTTTTTTTTTGTTCTCTATTCCGTTCCGTTGGCTGAAG
TGTGCCCCCTTTTCTGTTTCAACCGTGCCACTTCGTCGGTACCTGCTCCC
ATCCAAAGGGTCGGGGAACGCATTCTGGACGTCGGGTGCGGGGATGGCGT
CTTGACCGCGGAGATCAAGGCCAGGGGCTGCAGGGTGGTGGGCATAGACT
TCGCCCCCGACATGGTCGACGCGGCTGCCAGAAAGGTCGAGCCCTAGATT
TTTCCTCTGATGCGTCGGAGGATGCGATGTGGTGGTGAATAGTCTGGAGG
CTGTGGTGTAGAAGTGGCTGAACAGGTGTTTAGATAATAGCGGCAGTGAC
ATGGCAGCAGTGCGGTTGAGAGGGAACAATGGACGACGCGGTTGTGTGCG
AATACGGATGCGATTTTTTCCACCGCCGTTGTACATACCGTAGGCACAGC
CGTCAGCATCATACCGTTTTCAGCCTTCCCCGCCGCTACTGGATACCGCG
AGGAATGGGCCGCTGATCCCGTTGCTTCATTTCAATGCGTGTGACATAAG
AGCCCTTCTGAGGTGTTGCCGGATCGTAACAGCTATCTTAGCGATTCGAA
TTCTTTCAGCTAGACGTCTCAGCCCTGAGCAACATATTTTCTCGCGTCAG
GTGCGGATGAATTTTTGTCGACCCGCCGCTGCTTGTCATTGTGCTGTTCG
TGGCACTCCCCGCAGCGTCTACAGCAGTCATGTAAACTGGCCCGTAGACG
GGAGGATCGGTGCTAATCTTAGAGCGTGCTTCAAGTGCTGTGATGTAGTC
GTTTGTGTCCGCCAATAGCGGAACAGAAGAAGGAGACCTTGTAGCTTCTT
GTGTACTCTGATGTGAACGTGGATGGAGCACACGGTTACCCCCCAAGGCT
TCGTTGACGACAGCACCACCGTCTCTTTTGTGGATATCTACGATATCCCT
ACCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCCCCCCCCCCCCCCGTAGTCGACTGCGACAACCCATCTTACCCGCAAAC
CCGTCCACCTCGTAGGCCTTAGTCTCGACATCCACATCCGCAAGGCGCTA
TCTTCTCGTAGGCTCTCAACAATCGACTCCGTCCACGAACGCTAACTCGA
CCCCCCCCCCGGTGTCAACGAAACTTTTCTTATTTTCGTGTCGAAGGATA
TCGAAGCGTACGTCATGGATGCGTCGGCCATCAACGCCCCGTTCCTCCTC
GCGAAGCTCTCCGCCCACGACCACAACGACAACTGCAGCAGCCCTCCCTC
GCCTCCGTCCCAAACGACAGCCACGGAGGGAGATCCCGCCGCCCCGCTGC
CCCCCCCCCACAGAGAGGGCAACAGAGCAGAGAGGGGAGAGGCGCCAGTG
GCGTTCGACGCTGTGTTCACGAATGCCGCTCTGCACTGGGTCAGGGCGCC
GCAGACTGTGATCGAGGGGGCCAAGCGGGTCCTGAGACCAGGGGGAAGGT
ATAGAACCTATTCTGGGTTGCAGATCTGCACACGTCGCACGCCAATTGTT
TCGGGAACTTTTTGTAGAAATACATACGTGTTGTTGGGGACGGCTTTCTC
GTCCTTCGCTGACTGATACTGCTGCGTCGGGAGGGGTGTGAGCTCATAGC
CGTGCATGCCGTAGTCGATATATCATATGACCCTAGCATCCCTACAAAGC
CGGGACGGAGCACGCCGGGTTCTCACCGGACCAGGTTCTCAAATCACCAA
GCGCGAAGCTCTGTCAGGAGTGGGGGGGGGCACTGAGCGTGAATTCGATG
GGATGCTCGAGACTTGTAAGGAAGTGCTTGTGTAGTTCTACACCTTGCGC
CGGCTCCCCTCGCAATCGCTACATTCAACCTGGCACAAGAAAAACGTGTT
CGATGAAATCCCGAAACAGGTTTGATACACATATTTCCCGTGTATTGATC
CCGCTGCTATGTACCAGATGGGTGTTTCCACACGAAAATGTACTCCGGAG
TACTTGTTTACGCTACGGACATCCTCCGTGACAGATAGAGTACTTGTTGG
CTAGGGTCCCAACAAGCATGGGAATCGAGATCTCGTGACGGGGCGCACGA
CTGGTGCGTCACGAAACTCAAACCTCGATGGTGCCAGCGCCAACGCTGGC
CCTCATGAGTGCGTGCAGGCCCTGCTGCGCTGTTTCAAGCGGATTTAGCC
GCTTCTGTTGGACGACCCGTGTTTTGTCTTCTATGGATGGATGTGCCGCA
CACGTGTGTGAAGTGTGTGTGTTTCCTGGTTGGTGTCCTCACATGGTGCA
ACGCTTGATAATGCATAGACCACTGAATACTAGGGGTGTTGATGGTGCGA
TCGATGTACCCGCCGATGCCTGGTTGACCCAAACAACAAAAATTGTGTCC
TGAAGGTTTGTGGGAGAGTTTGGAGGCCACGGAAACATGGCGGCGGTCCG
AGTTGCCATGCACGCTGCCTTGTGGAGGAGAGGGGTGGATCCCTTGGCCG
TTGATCCGTGGTACTTTCCGACGCCGCGCGAGTATCGACAGCTGCTAGAG
GCGGTGAGTGTCTATTAGTCTATTAGCTTCTTTCTTTTTTTCATTCTCTT
TGTTCTTGTAGGGTACGGTCTGGTTAACCCTTTCGCTGAAATGAGTTGTC
GGGATTCGAGGGAAGATCTAGCCTCTGCCTGATCGTATGCATTGTCGGAG
AGAACCGCGGGTGGCATTTCCCAGGTACACCCGACTAATTTTTTTCTGTG
GCCATTGTGGCGGGTGCGGTAATTTAGATATGTACCGGCTGATTTGGGTG
TAGAACGTACCGCAGAACGCCTTCGCCAACGCCTTGGAGACCTTCACCGG
GGACTACCATGGTTATTTTCCGTGACAAGCTGAACAAAAAATAGATTCCG
CGAGCTGGCCCGTGCGGTCCGGATGGTATGTGGCGCCGGGGGCGTTGCTC
TCAGCACACGTTTGTGCCGCTCATGATCACACCCCTACCCCTTGCCCGCC
CACATCTTCTAACCCCCCCAGCTCTTCACGAAGGCAAGCTAGCTCACGTT
TGCTCCGCACCCTCCTACGCTTGTGCTGCTCAGGCCGGTTTTATCGTCGA
TGACGTTTGGCTCGTGCCGCGGCCCACAGTCCTGCCGGCGGGAACCGGCA
TGCGTGGGTGGCTTTCCACCTTCACGAAGGCGTTCCTGAACGCGATACCG
GAGGAAGCTTCAAGCAACCGTGAGAGACCGCCTTCCCTTGTTTCTGTTCT
TGTTCTAGCGTGGAATGGCGCCAAGAGAAGACATGGCGTTTATTGATGTA
GGCATGTTCATTGTCGTACTTTCTGTTGTTGTCAAGATGGTCGTCACGAG
AACCCTTTTTGTTCCCGCTTTTGCAAAGAGGCACGGAGGTTGTTGTAGTG
CCTCAATCGCTCGAGTGATGTCCAACCTGCGCGGCATAGTTATCATTGTA
CACAACCGCGACGTTGAGCATTGCATTGCTTGATAGGGACGGCAACAATT
TCCTCTAAAGTAAGTGGCGAGACAAGCGGACCACCAAGAGGCACTAAGTC
CGCGTTATCCTAGCACACATGACAGATCGCACGCAAGACGCACCCCCCCC
CTCCCCACCGTTTTTTCCCATATCCCGTTCCGTTTTGTCTTCCGACAATC
CTCCGTCCCACCCCAACAAAAAAATTGTAACTACATTCACAAAGGCGGCA
CGACCAATGAGAACGGTCTGACCCAGACCAAGGCCACGGTGGTCGACGAG
GCCCTCGCAGCCTTGCAGCCCGCGCTGCGAGACAAGGACGGCTTCTGGAC
CGCGGACTACGTGCGCCTACGCTTTAGGGCACACCTTCCTCACGACAGCG
CCAGCGGCACGGGAGTGGAGAGAACATATTAAGGCTGAACATAAGGGTTT
GCTCGTGTTGTTAGTATTTGGTCCCGCGAAGAAGCGCGGACGAAACGAGT
AGTGCCGTCAAGTTCTGGCGCGCTCTCCCCCTGGTTGCTTTTTGGCTGTT
TGGCAGATAGGAAGC
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Coding sequence (CDS) from alignment at Scaffold_73:38484..43498-

>EsuBft1036_8a-0001 ID=EsuBft1036_8a-0001|Name=EsuBft1036_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1056bp|location=Sequence derived from alignment at Scaffold_73:38484..43498- (Ectocarpus subulatus male Bft15b)
ATGACCTCGACCTCTGAGCTCACGTTTGTCTTGGGGCGCTTTGTCGTTCA
CGGGGCCCGGACTAAGGCGGAAGACTGGGACGCGGAACGCTACTCCACCA
ACGCAGCCTTCGTCCCCGAGCTAGGCAAAAACCTTTTGGACTTACTAGCG
CCAAGGGTCGGGGAACGCATTCTGGACGTCGGGTGCGGGGATGGCGTCTT
GACCGCGGAGATCAAGGCCAGGGGCTGCAGGGTGGTGGGCATAGACTTCG
CCCCCGACATGGTCGACGCGGCTGCCAGAAAGGATATCGAAGCGTACGTC
ATGGATGCGTCGGCCATCAACGCCCCGTTCCTCCTCGCGAAGCTCTCCGC
CCACGACCACAACGACAACTGCAGCAGCCCTCCCTCGCCTCCGTCCCAAA
CGACAGCCACGGAGGGAGATCCCGCCGCCCCGCTGCCCCCCCCCCACAGA
GAGGGCAACAGAGCAGAGAGGGGAGAGGCGCCAGTGGCGTTCGACGCTGT
GTTCACGAATGCCGCTCTGCACTGGGTCAGGGCGCCGCAGACTGTGATCG
AGGGGGCCAAGCGGGTCCTGAGACCAGGGGGAAGGTTTGTGGGAGAGTTT
GGAGGCCACGGAAACATGGCGGCGGTCCGAGTTGCCATGCACGCTGCCTT
GTGGAGGAGAGGGGTGGATCCCTTGGCCGTTGATCCGTGGTACTTTCCGA
CGCCGCGCGAGTATCGACAGCTGCTAGAGGCGGCCGGTTTTATCGTCGAT
GACGTTTGGCTCGTGCCGCGGCCCACAGTCCTGCCGGCGGGAACCGGCAT
GCGTGGGTGGCTTTCCACCTTCACGAAGGCGTTCCTGAACGCGATACCGG
AGGAAGCTTCAAGCAACCGCGGCACGACCAATGAGAACGGTCTGACCCAG
ACCAAGGCCACGGTGGTCGACGAGGCCCTCGCAGCCTTGCAGCCCGCGCT
GCGAGACAAGGACGGCTTCTGGACCGCGGACTACGTGCGCCTACGCTTTA
GGGCACACCTTCCTCACGACAGCGCCAGCGGCACGGGAGTGGAGAGAACA
TATTAA
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