EsuBft1036_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1036_6a-0001
Unique Name	EsuBft1036_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_73	contig	Scaffold_73:45377..46389 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005100548.1
ProteomeId	EsuBft1036_6
Protein domains	PTHR19446
Protein domains	SSF56672
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	transposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1013
Hectar predicted targeting category	other localisation
Evalue	3.88e-67
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3E41I@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1036_6a	EsuBft1036_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_73 45377..46389 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1036_6a-0001-exon	EsuBft1036_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_73 45377..46389 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1036_6a-0001-exon	agat-three_prime_utr-346	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_73 45377..45492 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1036_6a-0001-cds	EsuBft1036_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_73 45493..46389 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1036_6a-0001	EsuBft1036_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_73 45493..46389 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_73:45377..46389-
coding sequence from alignment at Scaffold_73:45377..46389-

spliced messenger RNA

>EsuBft1036_6a-0001 ID=EsuBft1036_6a-0001|Name=EsuBft1036_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1013bp|location=Sequence derived from alignment at Scaffold_73:45377..46389- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGACTGTACCAACACCTCAAGAGATCAGTGGGCCTCAGCGGGAG
ACAAGCGGGGGGACAGCAGTTCGTCGCGGATGAGAACGGCGTGTTGCTCC
GGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTA
CTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGAACGAGTGAC
GCAGCGGCCAGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAAC
TCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCC
GGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACC
CTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACAGAG
AAGATAACCCGCGAGATTGGAAGGATACAACCATCAAGGTGCTGTACAAG
AAGGGTAACCGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATC
TCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAAGCGCCT
TCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCC
GGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCT
GGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACA
AGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGG
GCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAGTTCCACGATGG
AATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCT
TCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACGCTAGTTC
AACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGA
GGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGG
AAGCGGGGGGGGG

protein sequence of EsuBft1036_6a-0001

>EsuBft1036_6 ID=EsuBft1036_6|Name=EsuBft1036_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=298bp
MRGLYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTL
LNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAP
GHDSLPAELLKIDDDEPFVLGHLHTILVKVWNREDNPRDWKDTTIKVLYK
KGNRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRP
GRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLAR
AGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPR

mRNA from alignment at Scaffold_73:45377..46389-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1036_6a-0001 ID=EsuBft1036_6a-0001|Name=EsuBft1036_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1013bp|location=Sequence derived from alignment at Scaffold_73:45377..46389- (Ectocarpus subulatus male Bft15b)
ATGAGAGGACTGTACCAACACCTCAAGAGATCAGTGGGCCTCAGCGGGAG
ACAAGCGGGGGGACAGCAGTTCGTCGCGGATGAGAACGGCGTGTTGCTCC
GGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTA
CTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGAACGAGTGAC
GCAGCGGCCAGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAAC
TCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCC
GGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACC
CTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACAGAG
AAGATAACCCGCGAGATTGGAAGGATACAACCATCAAGGTGCTGTACAAG
AAGGGTAACCGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATC
TCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAAGCGCCT
TCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCC
GGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCT
GGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACA
AGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGG
GCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAGTTCCACGATGG
AATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCT
TCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACGCTAGTTC
AACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGA
GGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGG
AAGCGGGGGGGGG

Coding sequence (CDS) from alignment at Scaffold_73:45377..46389-

>EsuBft1036_6a-0001 ID=EsuBft1036_6a-0001|Name=EsuBft1036_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=897bp|location=Sequence derived from alignment at Scaffold_73:45377..46389- (Ectocarpus subulatus male Bft15b)
ATGAGAGGACTGTACCAACACCTCAAGAGATCAGTGGGCCTCAGCGGGAG
ACAAGCGGGGGGACAGCAGTTCGTCGCGGATGAGAACGGCGTGTTGCTCC
GGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTA
CTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGAACGAGTGAC
GCAGCGGCCAGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAAC
TCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCC
GGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACC
CTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACAGAG
AAGATAACCCGCGAGATTGGAAGGATACAACCATCAAGGTGCTGTACAAG
AAGGGTAACCGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATC
TCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAAGCGCCT
TCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCC
GGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCT
GGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACA
AGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGG
GCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAGTTCCACGATGG
AATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCT
TCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACGCTAG