EsuBft1036_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1036_3a-0001
Unique NameEsuBft1036_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_73contigScaffold_73:67949..71096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1036_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length166
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001350.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_3aEsuBft1036_3aEctocarpus subulatus male Bft15bgeneScaffold_73 67949..71096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_3a-0001EsuBft1036_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_73 68871..71004 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_3a-0001-exonEsuBft1036_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_73 67949..69054 -
EsuBft1036_3a-0001-exonagat-exon-26855Ectocarpus subulatus male Bft15bexonScaffold_73 69980..70379 -
EsuBft1036_3a-0001-exonagat-exon-26854Ectocarpus subulatus male Bft15bexonScaffold_73 70935..71096 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_3a-0001-exonagat-three_prime_utr-343Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_73 67949..68870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_3a-0001-cdsEsuBft1036_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_73 68871..69054 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_3a-0001-exonagat-five_prime_utr-209Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_73 71005..71096 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1036_3a-0001 ID=EsuBft1036_3a-0001|Name=EsuBft1036_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1668bp|location=Sequence derived from alignment at Scaffold_73:67949..71096- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAAGCAAGCAAGCACTGCAAACTGAGACTAAAGTAAGGCGAAGCCAGCAG
GGCGAGGCAGGAGGCACAGGGGTGACGAGAGCATCGATCAGGATGGCCAC
CAGAAGGAGCCGAAGAGGAGCCGACGGCCAACCTACACCAGACATCGCAG
AAAAAGTTATAGACGCCACGGACGAAGAGCAAAGCAGCGACGACGAGGCG
CCGGAGGAGGTCAGCGCCGCGGCGGCAACCGCTCTTGCCGGTCGCCGCCG
AAAGGCGGAGCACCAGGCGCGCCAGGCGGCCGCCGCTCCGAAGAGGAAGC
GAGCGCGGACATCCTCGTCTTCGAAAGCCGTTGATGACGGCGGCGGCGAC
AAGAAGGCCTCGTCCGGGGAAGGTGAGCCGGCAGACGGGCTCGAGCTCCC
CTCGGACTTGCTGCTGAGGGTCAAGTCCGGTGGGTTGCAGCGCATGGAAG
CGGACGTGTTGGAGGCGGAGGAGCAGGCGGAGGCGGCGGCGGCGGCAGCG
GCGGCGACCGCACCGGGCGGAAGGAGGAAGGCGAGAGCCAAGGCTGGGGA
TGCCTCGCGGAGCGACAATTTCCGACTGGTGGTGTTGGACGAGGATGACG
GTGGCGATGATGCCGATGCTGAGAGTAAGGCCCACGCCGCGGAAAGTGCC
AAGAACTTTCTTCGCGACCGCTTGGGGAGCCGGAAACGAGTCAGCCATAG
CTTGTTCAAAGCTCGCAAGCGGCTCGGCCCTTCGCCGAATTTCTGATCCC
ACGTTTTATCTCGTCTCACTTTCAGTGTACTCTGCCGTTGATTTAGTTGT
AAATGTCCGTTCGCAGCTGTTTATTCCGTCGCTCCTTTGGCACCCTACAC
AGGCGCAGGTTTGACTTTCCCTGAGATTGTCCATGAAAATGAATCAGCCT
GCTCAAACCTCTTTCGCGGGTGAAAAGTCGTGCGGCTTGGATAGGGTTTC
AGAGTTTTGTTCACTCGTTTCATTGTGGTGATACATACACCTGCAGGTCA
AGCATATCTTTTGGGGGGGGGTATAGTGATAGACCACGTCGACCGCTCTT
TTGGACAAGGTGTGTAGCAGTGGCTGCCGGTGCGGTGATTGCTGGCGCCC
AGTGTAGCCGTTCACGCCTAGGCGGGGCGATGCATGCCATCCGGGAGGAA
CTAAGTGGCAGTTGACACGGCAACACGAAACGAACAACAACTTCGAACAC
CAACAATTGTTGTGTGCCCGTCTAGGTACCGTAGTCGGTGGGTTTCAGTG
AGGAAGAGAGGGTTTAGTCATGTTACGGAAGCGTGCGTTCAGCACATTTC
CATTTGCGTCAACTATGTGCTTCAGTGCACATGTTTTTTATGGTTTTTGA
AAAGGGGTGTGATGTGAAATGTCGCCTCACTGATGTCACGTCCTACCGTA
CAATGTCCATTGATGTGCGTAGTTGAATGGCTTGCGTGATCGGCCAACTA
TTGTTCTTGCTTGCGCATGTCGAATTTTTCTCTCTGACAGAGAACTCCGC
CTTCGTTCGTGCTCGCCATGCACGCCACCACGGCAACGTTGGTGTAGCAA
GCCTTAAGCCTTGTGGCGGCGTTATGCTGGCACAAACTAACGCCTACCTT
AACTTCCTCTTTTCGGTCGGGAAGCGAATGGCAAACGATGTTTTCGAGCC
CGAGCAAGTACCTTCGCT
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protein sequence of EsuBft1036_3a-0001

>EsuBft1036_3 ID=EsuBft1036_3|Name=EsuBft1036_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=217bp
MATRRSRRGADGQPTPDIAEKVIDATDEEQSSDDEAPEEVSAAAATALAG
RRRKAEHQARQAAAAPKRKRARTSSSSKAVDDGGGDKKASSGEGEPADGL
ELPSDLLLRVKSGGLQRMEADVLEAEEQAEAAAAAAAATAPGGRRKARAK
AGDASRSDNFRLVVLDEDDGGDDADAESKAHAAESAKNFLRDRLGSRKRV
SHSLFKARKRLGPSPNF
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mRNA from alignment at Scaffold_73:67949..71096-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1036_3a-0001 ID=EsuBft1036_3a-0001|Name=EsuBft1036_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3148bp|location=Sequence derived from alignment at Scaffold_73:67949..71096- (Ectocarpus subulatus male Bft15b)
CAAGCAAGCAAGCACTGCAAACTGAGACTAAAGTAAGGCGAAGCCAGCAG
GGCGAGGCAGGAGGCACAGGGGTGACGAGAGCATCGATCAGGATGGCCAC
CAGAAGGAGCCGAAGAGGAGCCGACGGCCAACCTACACCAGACATCGCAG
AAAAAGTTATAGGTCAGTGGGCCGCGCAAGGTCGGCGACATCCTTCATTG
GACGGACCAACCACAACTACGTCTGGGAGCAGGCAGCCGCCTGACATTCT
CGGCTACCACACGAGAATTATATCTGCTCACCATGGGCACGTATATTTTG
TCGTGTGACTACTGATGAGGCAGAGAGTAAATGCTGATTTTCAGAGAGTC
GCCCGAGGGGGTGAGGGCGTCTTGTCTGCAGGGCGCGTAGGTGGCCCGGC
CGAGACCATCCCCTAGTGCAAGCAGGATGCTGTAGTCTACATAATCCTCG
AGACACGCTGTTAGCTAGAGAACACTTGTCGTTCCCATGGATCTATGTAA
ACAAGACTTGACCTTTGTAGCAGTCCTTGGCGTACGAATGCAATCTCACA
CATGGTGCACAAAATCTCGCTGCGTTCAAGACGCGAGTTCACGGCATGTC
CAGCACATCACTTGTTCTCGGGTCAGGCGGCAGCTCTTACCTCTTTATTG
TTGTACAAAAAATAATACGAACACACGCGACCCTGTGGTCCCGCTTGCTG
CCCGCGCCAAACAGCAGACGCCACGGACGAAGAGCAAAGCAGCGACGACG
AGGCGCCGGAGGAGGTCAGCGCCGCGGCGGCAACCGCTCTTGCCGGTCGC
CGCCGAAAGGCGGAGCACCAGGCGCGCCAGGCGGCCGCCGCTCCGAAGAG
GAAGCGAGCGCGGACATCCTCGTCTTCGAAAGCCGTTGATGACGGCGGCG
GCGACAAGAAGGCCTCGTCCGGGGAAGGTGAGCCGGCAGACGGGCTCGAG
CTCCCCTCGGACTTGCTGCTGAGGGTCAAGTCCGGTGGGTTGCAGCGCAT
GGAAGCGGACGTGTTGGAGGCGGAGGAGCAGGCGGAGGCGGCGGCGGCGG
CAGCGGCGGCGACCGCACCGGGCGGAAGGAGGAAGGCGAGAGCCAAGGCT
GGGGATGCCTCGCGGAGGTGAACATTTGATGCGGATCTTGCCAGTTGTAT
ATGTTTCGACGCATGTTTGGTTTGGGGTTTTACAGTGCGACAGTCAAGTT
CCCTGCTCGTTCCATGCCATGTTTTTGAGAGAAAGCCGTGTACCACAATT
TAGTTGCTGCGGTAGCGACAAGTTGAGTTTTCAGAGGAATATGCGAGGCT
ACTTCTATGTACATTTTCGCGCTACTATGTCACGTGGATTCATCTCATGG
ATGGGCAAGTGTACGATGGGTATTCAATCCGTTGGTGCTTTTTGATGCTG
AGGTATTTCTCATTTCCATGGAGGCTCCGTCGATTTTGGGCATGATACCC
GCAGCTGTCGGATTTTTCCATTCATGACCTCATGTGCCGGATGATTTCTT
TCGAACACTGCAACCCTGGTCGAGACTGCGTCAGGATGCTCACAACCGGC
TTTTGACATTCTCGAAGTTGGGAACGTCGTTGTCCTAGTACTGCTGTAAA
GTGTGTTAGCCGAGGTGGAGCCTTGCTCCTGAATTTTTTTCTCCCGCACG
GCCTCGTTGTCCCTTTGCGTTGCGTTGGGGCCTTCTCTACCGAGCCCTTG
CGTGCCATTGGGTCCAACTTCTTCTCGGCAGCCGCTAGACCGTCCCGCTC
CCGCGTAAATTTCTGTGCGTCTCACCATGCATCGGTACAACCGTTCGTGA
TTTCTCCTGGGCCAACGCCTCTCCAGTGCTTTGCCCGCCCACTTAATCTT
AACTCGGCAATACAGTACGTTTCAGTCTTAAATTTATGCGTCACTTGCTG
CAGCGTTCCCGCTCTCTGTCTGATACTCCCCATGCCTAGGTCCCACTCTC
TTTCGGAACCCCATCACCCCCCGCCGCCCCCCTGTTGTCAATCCCTCTGG
ATGTACCCTCCCTTCATGTCACTTGGCGCCTCTTCGTCTCAGCGACAATT
TCCGACTGGTGGTGTTGGACGAGGATGACGGTGGCGATGATGCCGATGCT
GAGAGTAAGGCCCACGCCGCGGAAAGTGCCAAGAACTTTCTTCGCGACCG
CTTGGGGAGCCGGAAACGAGTCAGCCATAGCTTGTTCAAAGCTCGCAAGC
GGCTCGGCCCTTCGCCGAATTTCTGATCCCACGTTTTATCTCGTCTCACT
TTCAGTGTACTCTGCCGTTGATTTAGTTGTAAATGTCCGTTCGCAGCTGT
TTATTCCGTCGCTCCTTTGGCACCCTACACAGGCGCAGGTTTGACTTTCC
CTGAGATTGTCCATGAAAATGAATCAGCCTGCTCAAACCTCTTTCGCGGG
TGAAAAGTCGTGCGGCTTGGATAGGGTTTCAGAGTTTTGTTCACTCGTTT
CATTGTGGTGATACATACACCTGCAGGTCAAGCATATCTTTTGGGGGGGG
GTATAGTGATAGACCACGTCGACCGCTCTTTTGGACAAGGTGTGTAGCAG
TGGCTGCCGGTGCGGTGATTGCTGGCGCCCAGTGTAGCCGTTCACGCCTA
GGCGGGGCGATGCATGCCATCCGGGAGGAACTAAGTGGCAGTTGACACGG
CAACACGAAACGAACAACAACTTCGAACACCAACAATTGTTGTGTGCCCG
TCTAGGTACCGTAGTCGGTGGGTTTCAGTGAGGAAGAGAGGGTTTAGTCA
TGTTACGGAAGCGTGCGTTCAGCACATTTCCATTTGCGTCAACTATGTGC
TTCAGTGCACATGTTTTTTATGGTTTTTGAAAAGGGGTGTGATGTGAAAT
GTCGCCTCACTGATGTCACGTCCTACCGTACAATGTCCATTGATGTGCGT
AGTTGAATGGCTTGCGTGATCGGCCAACTATTGTTCTTGCTTGCGCATGT
CGAATTTTTCTCTCTGACAGAGAACTCCGCCTTCGTTCGTGCTCGCCATG
CACGCCACCACGGCAACGTTGGTGTAGCAAGCCTTAAGCCTTGTGGCGGC
GTTATGCTGGCACAAACTAACGCCTACCTTAACTTCCTCTTTTCGGTCGG
GAAGCGAATGGCAAACGATGTTTTCGAGCCCGAGCAAGTACCTTCGCT
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Coding sequence (CDS) from alignment at Scaffold_73:67949..71096-

>EsuBft1036_3a-0001 ID=EsuBft1036_3a-0001|Name=EsuBft1036_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=654bp|location=Sequence derived from alignment at Scaffold_73:67949..71096- (Ectocarpus subulatus male Bft15b)
ATGGCCACCAGAAGGAGCCGAAGAGGAGCCGACGGCCAACCTACACCAGA
CATCGCAGAAAAAGTTATAGACGCCACGGACGAAGAGCAAAGCAGCGACG
ACGAGGCGCCGGAGGAGGTCAGCGCCGCGGCGGCAACCGCTCTTGCCGGT
CGCCGCCGAAAGGCGGAGCACCAGGCGCGCCAGGCGGCCGCCGCTCCGAA
GAGGAAGCGAGCGCGGACATCCTCGTCTTCGAAAGCCGTTGATGACGGCG
GCGGCGACAAGAAGGCCTCGTCCGGGGAAGGTGAGCCGGCAGACGGGCTC
GAGCTCCCCTCGGACTTGCTGCTGAGGGTCAAGTCCGGTGGGTTGCAGCG
CATGGAAGCGGACGTGTTGGAGGCGGAGGAGCAGGCGGAGGCGGCGGCGG
CGGCAGCGGCGGCGACCGCACCGGGCGGAAGGAGGAAGGCGAGAGCCAAG
GCTGGGGATGCCTCGCGGAGCGACAATTTCCGACTGGTGGTGTTGGACGA
GGATGACGGTGGCGATGATGCCGATGCTGAGAGTAAGGCCCACGCCGCGG
AAAGTGCCAAGAACTTTCTTCGCGACCGCTTGGGGAGCCGGAAACGAGTC
AGCCATAGCTTGTTCAAAGCTCGCAAGCGGCTCGGCCCTTCGCCGAATTT
CTGA
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