EsuBft1036_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1036_11a-0001
Unique NameEsuBft1036_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_73contigScaffold_73:16902..19396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1036_11
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length238
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_11aEsuBft1036_11aEctocarpus subulatus male Bft15bgeneScaffold_73 16902..19396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_11a-0001EsuBft1036_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_73 16902..17051 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_11a-0001-exonagat-exon-26890Ectocarpus subulatus male Bft15bexonScaffold_73 16902..17972 +
EsuBft1036_11a-0001-exonagat-exon-26889Ectocarpus subulatus male Bft15bexonScaffold_73 18022..19319 +
EsuBft1036_11a-0001-exonEsuBft1036_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_73 19377..19396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_11a-0001-cdsEsuBft1036_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_73 16902..17051 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1036_11a-0001-exonagat-three_prime_utr-339Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_73 17052..17972 +
EsuBft1036_11a-0001-exonagat-three_prime_utr-340Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_73 18022..19319 +
EsuBft1036_11a-0001-exonagat-three_prime_utr-341Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_73 19377..19396 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1036_11a-0001 ID=EsuBft1036_11a-0001|Name=EsuBft1036_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2389bp|location=Sequence derived from alignment at Scaffold_73:16902..19396+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCACCCGGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTACAGTTGGACCGGTCACCCTTCTTGTACAG
CACCTTGATGGTTGTATCCTTCCCCTCTCGCGGGTTATCTCCTCCGTTCC
ACACCTTGACGAGGATGGTATGGAGGTGTCCCANTAATCTTGATGGGGAC
CTTGCCTACGTGAGATAGTACCGAAATCCCCCTGTAGTTGTTACAGTTGG
ACCGGTCACCCTTCTTGTACAGCACCTTGATGGTTGCATCCTTCCACTCT
CGCGGAATATCTCCTCCGTTCCACACCTTGACGAGGATGGTATGGAGGTG
TCCCAGGACGAAGGGTTCGTCGTCATCGATCTTGAGCAACTCGGCAGGGA
GGGAGTCATGGCCGGGTGCCTTCCAGTTCTTGAGGCCTTTCGTTGCCCGT
GCCACCTCCTCGAGTTCTGGCACATCTCCCAACCGTTGAGTGTCACGTGT
CGCTGGCCGCTGCGTCACTCGTTCGATGATGTCTGGGTTCAGGGTGGGGG
ATTTGGTGTTGAGTAGGGTGCTGAAGAATCTCGCCCACCGCTGGAGGATG
TCGTCCCTGTTCCGGAGCAACACGCCGTTCTCATCCGCGACGAACTGCTG
TCCCCCCGGTTGTCTCCCGCTGAGGCCCACTGATCTCTTGAGGTGTTGGT
ACAGTCCTCTCATGTCGCGATCTTTGTAGATTGCTTCGAGCTCAGTCACA
TATCCGTCCAGGTGGGCATAAATGCCCGTTTGCCTGCTGTAGCCACTCCC
TTTCACGCTGCTGTGAGAACCCTCCACGTCGCTGAGTTCCAGTTGCCCCT
CATTGTCTCTGGGGTCTCACACCACTCCTGCGTGCGGCGTCTCCGCGGTT
CCTCCCCCAGGGTCGTCCGCGCTGCGTCGAGGCGAGCATTGGTAAACTCG
GTCGCCAATTCCGCGGCGGTGTCACCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC
GTTAGATACCCGGCCGTGATGTGCCTACCTTGTCAGGATGTAGTCAAGGC
GCTTGCAATCGTTTCCCGACACACCGTTGTATGTGTGCAATATTCCGCTG
TTGCGTGTCTCGAAGAACGTGTTCGTGAGAGCTAGCCTGTTTTCCGTTGC
AAATTTCAACAGCAGTAGTAGCATGCCATTGTCGTTGAGCTCATCACGCC
CGTACATTCCTAATACCCTCCCGTCCCCTCCGTCCGACCTATCTCCCGTC
CGCGCGTTGGCGTCCAGTAGCACATACACACATTTTTTGGAAGGGATCCT
CGGTACGAGACTGTAAATTTTTCCCCAGAACACTCGCTTACTGTCGGCGG
TTGAAGGTTCGGTTGGAGCATACGCGGCTACGAAGTTGACCGCTCCACGG
TGGCCTGCCAACAGAAACCTCATGGCCATAAGGCGTTCGTCGATAAACTT
CGTAGTGAACGTGGATGTCTTGCACAGTGACTCTTTGACGGCTATCCCCA
CACCATGGACTCCACCAGTCTCCGTGCCACAGTAGAACACCCGGAAACCC
GCTGCTGCAAATTTCGTTCGACCTGCCCTCCCTGTCTCGTGCATTCCTAC
CACCGATACGTCTCGTCTCGCTGCCTCGTGTAGAACGCTGTAAGCTCGCC
CGTATCCATTGGCCCCGTTTACAGCCAAAGTTCGCACATTCCAGGTTGCT
ACCCTAAGAAGTTGACCCTGCTGTCTCTTTCGCGCGGCGCGCGCTGCTCT
CTTAGCTAGCCTACGCGCCGCCCGACCCCTCCTTTTCCTCCATCTTCCCC
TCTTTTTTTGTGTTTTTTTTACTATTTTCTTGCGAACACTCGGGCTAACG
TGATATTTACCCCGGTTCTTGCCTTGTTTCCCATAGAGTTGTCCTCTTGT
CCCGGAGCGGTGTGACCCTCCATCTCTGGACTGTCTCCTTTCCGCTCTCT
GGGGCATACCCCCACGACGTGCGGCCACTCCGCCATCCTCACCGTGCTCT
CTGCTGCTGCATAGCCCCGCTCGGCCATGACGGGCCGTT
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protein sequence of EsuBft1036_11a-0001

>EsuBft1036_11 ID=EsuBft1036_11|Name=EsuBft1036_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MRTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_73:16902..19396+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1036_11a-0001 ID=EsuBft1036_11a-0001|Name=EsuBft1036_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2495bp|location=Sequence derived from alignment at Scaffold_73:16902..19396+ (Ectocarpus subulatus male Bft15b)
ATGCGCACCCGGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTACAGTTGGACCGGTCACCCTTCTTGTACAG
CACCTTGATGGTTGTATCCTTCCCCTCTCGCGGGTTATCTCCTCCGTTCC
ACACCTTGACGAGGATGGTATGGAGGTGTCCCANTAATCTTGATGGGGAC
CTTGCCTACGTGAGATAGTACCGAAATCCCCCTGTAGTTGTTACAGTTGG
ACCGGTCACCCTTCTTGTACAGCACCTTGATGGTTGCATCCTTCCACTCT
CGCGGAATATCTCCTCCGTTCCACACCTTGACGAGGATGGTATGGAGGTG
TCCCAGGACGAAGGGTTCGTCGTCATCGATCTTGAGCAACTCGGCAGGGA
GGGAGTCATGGCCGGGTGCCTTCCAGTTCTTGAGGCCTTTCGTTGCCCGT
GCCACCTCCTCGAGTTCTGGCACATCTCCCAACCGTTGAGTGTCACGTGT
CGCTGGCCGCTGCGTCACTCGTTCGATGATGTCTGGGTTCAGGGTGGGGG
ATTTGGTGTTGAGTAGGGTGCTGAAGAATCTCGCCCACCGCTGGAGGATG
TCGTCCCTGTTCCGGAGCAACACGCCGTTCTCATCCGCGACGAACTGCTG
TCCCCCCGGTTGTCTCCCGCTGAGGCCCACTGATCTCTTGAGGTGTTGGT
ACAGTCCTCTCATGTCGCGATCTTTGTAGATTGCTTCGAGCTCAGTCACA
TATCCGTCCAGGTGGGCATAAATGCCCGTTTGCCTGCTGTAGCCACTCCC
TTTCACGCTGCTGTGAGAACCCTCCACGTCGCTGAGTTCCAGTTGCCCCT
CATTGTCTCTGGGGTCTCACACCACTCCTGCGTGCGGCGTCTCCGCGGTT
CCTCCCCCAGGGTCGTCCGCGCTGCGTCGAGGCGAGCATTGGTAAACTCG
GTCGCCAATTCCGCGGCGGTGGTTGTTCGCTCATCCAGTCGTGTGTCGAG
GTTGAGGAGGAACCGATTAGTCACCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACG
TTAGATACCCGGCCGTGATGTGCCTACCTTGTCAGGATGTAGTCAAGGCG
CTTGCAATCGTTTCCCGACACACCGTTGTATGTGTGCAATATTCCGCTGT
TGCGTGTCTCGAAGAACGTGTTCGTGAGAGCTAGCCTGTTTTCCGTTGCA
AATTTCAACAGCAGTAGTAGCATGCCATTGTCGTTGAGCTCATCACGCCC
GTACATTCCTAATACCCTCCCGTCCCCTCCGTCCGACCTATCTCCCGTCC
GCGCGTTGGCGTCCAGTAGCACATACACACATTTTTTGGAAGGGATCCTC
GGTACGAGACTGTAAATTTTTCCCCAGAACACTCGCTTACTGTCGGCGGT
TGAAGGTTCGGTTGGAGCATACGCGGCTACGAAGTTGACCGCTCCACGGT
GGCCTGCCAACAGAAACCTCATGGCCATAAGGCGTTCGTCGATAAACTTC
GTAGTGAACGTGGATGTCTTGCACAGTGACTCTTTGACGGCTATCCCCAC
ACCATGGACTCCACCAGTCTCCGTGCCACAGTAGAACACCCGGAAACCCG
CTGCTGCAAATTTCGTTCGACCTGCCCTCCCTGTCTCGTGCATTCCTACC
ACCGATACGTCTCGTCTCGCTGCCTCGTGTAGAACGCTGTAAGCTCGCCC
GTATCCATTGGCCCCGTTTACAGCCAAAGTTCGCACATTCCAGGTTGCTA
CCCTAAGAAGTTGACCCTGCTGTCTCTTTCGCGCGGCGCGCGCTGCTCTC
TTAGCTAGCCTACGCGCCGCCCGACCCCTCCTTTTCCTCCATCTTCCCCT
CTTTTTTTGTGTTTTTTTTACTATTTTCTTGCGAACACTCGGGCTAACGT
GATATTTACCCCGGTTCTTGCCTTGTTTCCCATAGAGTTGTCCTCTTGTC
CCGGAGCGGTGTGACCCTCCATCTCTGGACTGTCTCCTTTCCGCTCTCTG
GGGCATACCCCCACGACGTGCGGCCACTCCGCCATCCTCACCGTGCTCTC
TGCTGCTGCATAGCCCCGGTTGATCGATAATTCGGGTGGCTCAGTTGTGT
GTGATGGGAGCATAGACTAGAGCAGCTCGGCCATGACGGGCCGTT
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Coding sequence (CDS) from alignment at Scaffold_73:16902..19396+

>EsuBft1036_11a-0001 ID=EsuBft1036_11a-0001|Name=EsuBft1036_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_73:16902..19396+ (Ectocarpus subulatus male Bft15b)
ATGCGCACCCGGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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