EsuBft1035_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1035_3a-0001
Unique NameEsuBft1035_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_486contigScaffold_486:112636..115449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2903.EOD04670
ProteomeIdEsuBft1035_3
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length215
Hectar predicted targeting categorysignal peptide
Evalue5.11e-15
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K07088
Descriptionauxin efflux carrier
COG categoryB
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1035_3aEsuBft1035_3aEctocarpus subulatus male Bft15bgeneScaffold_486 112636..115449 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1035_3a-0001-exonEsuBft1035_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_486 112636..112751 +
EsuBft1035_3a-0001-exonagat-exon-54193Ectocarpus subulatus male Bft15bexonScaffold_486 113411..115449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1035_3a-0001-cdsEsuBft1035_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_486 112636..112751 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1035_3a-0001-exonagat-three_prime_utr-335Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_486 113571..115449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1035_3a-0001EsuBft1035_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_486 112636..113570 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1035_3a-0001 ID=EsuBft1035_3a-0001|Name=EsuBft1035_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2155bp|location=Sequence derived from alignment at Scaffold_486:112636..115449+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCGAGGTTCATGGTGATGCCACTGGTCGCGGCTATGCTTCTCTT
TTCCGGCGCCAAGGCAAAGCTGATCCCGTATGACAAGCTGGTCTGGTTCG
TCCTCCTCATGGAAGGGTGCATGCCGTCGGCGCAGAACAGCGTGGTGATC
CTGCAGATGGAGAAGAAGCCGGAGCTGGCCTCTTCGATGGCCAAGACCCT
GACGGCGGTGTATCTCCTCTCGGCGGTGCCCATCGCCTTCCTGCTGTCCG
CCATCCTACAGTTCGTGCAGCTCTGATTGGTTCGTATTTCTCCCCTCTTT
TTTTTAATATAACGCAGTAAATCCATCTCTTTTCAAACATGAGGATCTGC
TCGGATTGGATCGTGTTTTTATTCTATTGTCATCATATACAGCGAATCCA
CCTCTATCCATAGATGAGGGTCTGCTCTGACTGGTCCGTTCGTTTTTTTT
TTCGTTCCGAACGATCTGATATCTTGGGGGTGAAAACAACACCGATGAGC
GGCACTCTTGCCGGCGTGCACCTACCGGCCGTTTTCTTTTTATGATGTGG
TTCCGGTTCGGGATGATTTAGAGGTCAGGCTTGGTTCATTTCCTGTTCTC
GGGGGGAGGGGGGGGTGGTTCTGTGCGGTCCGATTGTTGCCGACTCGTTG
GCAGACAAATTCGAATCTGAGAGATTCGACGCGCGGCGGCTCGTCTGGCG
TCCGATCACGTGACTTCTCTGGTTGTCCCCCCATCGGCACACCCTTTGTG
GTGGTGGTGCTGCTGCTGCTGTTGCTGCTATGCTATTGACTAGTTGTACC
GCGCTGTAAGAATTGTATCGGGGACTCGATTTTTGTTTAGAACGAACACG
ACATGAAAGGAAGTCGATTGCTGAAGTCTTAGCCCACTTGACCAGAGAAG
ACGTGTCGACGTTCGTCCTTCCGGTTGAACAAGGTGCAGCAATGCTTCGC
CGATGGTTGGATTTTGCTGGAATGATCGGAGGTTCCTTCAGAAGTCATTT
GAGACAGATGCGAGTTTGGACGCTGCATGGTTTTTTGTTTTTTTTTTCTT
CTGATACTGGCTTGGTGCTTTTCTGCGAAAAAAGGTGGAGGTGTTTTGAG
TCGGGCAGCGCTTACAAAAAAGAACGAAAATGAAGCGGCCATCACGCTGT
TGGGGGGTGCTTTGGCCTTGGGTCAGGCCTTGCGACGGTCGGCACGCTAG
CCGGATACACTACTAATTCGTTTGTATTGGTTCACAAACAAAAAAGTTAC
GATTTAAAACTTGGCTCTTCGTTCTCAACGGGTCCCAACGGGACGGACGA
TCAGCCATTATCCTGTTGGGGATGCTTCGGGGCGTGGGATAGACAGCCCT
GCGGTCGGTTTCACGGTATATTGTACCCTGGCGGCACAGTAGGACTGTAG
TCTGCCTCCTACTGCCTAGAAGCAGTGCAGGCTTCCGGGGAAAGGGTCAA
TCTTCCCTGCTCTCCTGTCCGAACGCCGCGTACGTTCTGGCCGTGTGTTG
TGTTTTTTATCGTAGACTTAAAAATCAGGGGTTTTGGCTTCACCCCTCTC
TATCTCTCTGTGTGGTGGATCATCGATTTCGTTTCCTTTGTTTGTTGCTC
GCTGTTCGGATTTCTTGTCTTTTCATTTTTTTACTTTTTTTTTTCTTTTA
TTTTTTTACGAGCTGCTCTAATAACAGAGAGATGCTGTATTCGACTGTTC
AAGGTTTTCGATGTTGGGTGTCTTCTCTTTGTAGCACTGTTGTCTGTTTC
GTTTAGTCTTCCCGGCGTTACCAGGGAGAACGAAGCGTGTGGTCTCGTGC
TGTTTGCCACACGTACGCCGCTGCTGCTGCTACTGCTGCTCTGCTGCTGT
TGGTGGTGGTGCCGTACGCTACTGCTACGTGCTGCTGCGTGCTGCGGCGT
ACCAGTTTTGTTTTGTTTTTCGGGGGAGACTTGCGGCTGCTGTGTTTAGT
GCTGTAGTGCTCGCTTGTAGTGCTTGTGGCCTTGTGTAGTCGGGGGGCGA
AACTGATGTCCTTCTTGTGATCGTCTCGTCCAAAAGGGAGGTGAGGGCGA
GATTGGGGAGAAAGTGAGAGCGAGAAAGAGAGAGACAGAAAGACAGGAGG
TCCTCATATTCGTTGTTTGTGATTTTCTCTTGGCGAGGGAGAGAGACAGG
GCGGA
back to top

protein sequence of EsuBft1035_3a-0001

>EsuBft1035_3 ID=EsuBft1035_3|Name=EsuBft1035_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=91bp
MVSRFMVMPLVAAMLLFSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVI
LQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQFVQL
back to top

mRNA from alignment at Scaffold_486:112636..115449+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1035_3a-0001 ID=EsuBft1035_3a-0001|Name=EsuBft1035_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2814bp|location=Sequence derived from alignment at Scaffold_486:112636..115449+ (Ectocarpus subulatus male Bft15b)
ATGGTGTCGAGGTTCATGGTGATGCCACTGGTCGCGGCTATGCTTCTCTT
TTCCGGCGCCAAGGCAAAGCTGATCCCGTATGACAAGCTGGTCTGGTTCG
TCCTCCTCATGGAAGGGTGAGAGCTAGAAGAAACAAATATTTCATGAGTA
GGAGAAACGTCCATGAGAAAGAAAGAAAAATTGTTATATATACATATATA
TTTTTTCACAGTAGTGTTTTGCGAAAGGAATTACTTCATGAACCAGCATG
TTTTTTGTTGCGTACGACAAGCTGGTCTGGTTCGTCCTCTTCATGGAAGG
GTGAAGAAACAAATACTCCACGAGTAGGGAAAACGAAAAACGTCCAATAC
AAGGAGCAGTGTTTTGTGAGAGGAATATTTTCACAACCTAAACACCTATG
GTAATAGCGTATTTTTGTTGGATACGACAAGCTGGTCTGGTTCGTCCTCC
GCATGGAAGGGTGAGAGAGAGAAGAAAAACAAAACAAGGGGAGAATTTTT
TTTCTTGTAAGCAAAGCAAACGTTTCGTTGCAGGCAACTTCTATTATTTT
TGGATGAAGAATGTTTTTTGAAAAGGACCCCCACAAACTCATCTCCGCTG
TCTGCTGCTGCGAAGTGCTTTCGCCCGAGGCTGTACTTGTGTCCGTGTGT
TGCTATCCTCACTTACTCCGCTGCCTGCTGCGAAACTGATCACGCCCGAG
GCTCGACTTGTGTCCATATGTTTCGATCTCCACCAACTCAGGTGCCCCCC
CCTCCCTGTTTCGGCATTTTTTCAGGTGCATGCCGTCGGCGCAGAACAGC
GTGGTGATCCTGCAGATGGAGAAGAAGCCGGAGCTGGCCTCTTCGATGGC
CAAGACCCTGACGGCGGTGTATCTCCTCTCGGCGGTGCCCATCGCCTTCC
TGCTGTCCGCCATCCTACAGTTCGTGCAGCTCTGATTGGTTCGTATTTCT
CCCCTCTTTTTTTTAATATAACGCAGTAAATCCATCTCTTTTCAAACATG
AGGATCTGCTCGGATTGGATCGTGTTTTTATTCTATTGTCATCATATACA
GCGAATCCACCTCTATCCATAGATGAGGGTCTGCTCTGACTGGTCCGTTC
GTTTTTTTTTTCGTTCCGAACGATCTGATATCTTGGGGGTGAAAACAACA
CCGATGAGCGGCACTCTTGCCGGCGTGCACCTACCGGCCGTTTTCTTTTT
ATGATGTGGTTCCGGTTCGGGATGATTTAGAGGTCAGGCTTGGTTCATTT
CCTGTTCTCGGGGGGAGGGGGGGGTGGTTCTGTGCGGTCCGATTGTTGCC
GACTCGTTGGCAGACAAATTCGAATCTGAGAGATTCGACGCGCGGCGGCT
CGTCTGGCGTCCGATCACGTGACTTCTCTGGTTGTCCCCCCATCGGCACA
CCCTTTGTGGTGGTGGTGCTGCTGCTGCTGTTGCTGCTATGCTATTGACT
AGTTGTACCGCGCTGTAAGAATTGTATCGGGGACTCGATTTTTGTTTAGA
ACGAACACGACATGAAAGGAAGTCGATTGCTGAAGTCTTAGCCCACTTGA
CCAGAGAAGACGTGTCGACGTTCGTCCTTCCGGTTGAACAAGGTGCAGCA
ATGCTTCGCCGATGGTTGGATTTTGCTGGAATGATCGGAGGTTCCTTCAG
AAGTCATTTGAGACAGATGCGAGTTTGGACGCTGCATGGTTTTTTGTTTT
TTTTTTCTTCTGATACTGGCTTGGTGCTTTTCTGCGAAAAAAGGTGGAGG
TGTTTTGAGTCGGGCAGCGCTTACAAAAAAGAACGAAAATGAAGCGGCCA
TCACGCTGTTGGGGGGTGCTTTGGCCTTGGGTCAGGCCTTGCGACGGTCG
GCACGCTAGCCGGATACACTACTAATTCGTTTGTATTGGTTCACAAACAA
AAAAGTTACGATTTAAAACTTGGCTCTTCGTTCTCAACGGGTCCCAACGG
GACGGACGATCAGCCATTATCCTGTTGGGGATGCTTCGGGGCGTGGGATA
GACAGCCCTGCGGTCGGTTTCACGGTATATTGTACCCTGGCGGCACAGTA
GGACTGTAGTCTGCCTCCTACTGCCTAGAAGCAGTGCAGGCTTCCGGGGA
AAGGGTCAATCTTCCCTGCTCTCCTGTCCGAACGCCGCGTACGTTCTGGC
CGTGTGTTGTGTTTTTTATCGTAGACTTAAAAATCAGGGGTTTTGGCTTC
ACCCCTCTCTATCTCTCTGTGTGGTGGATCATCGATTTCGTTTCCTTTGT
TTGTTGCTCGCTGTTCGGATTTCTTGTCTTTTCATTTTTTTACTTTTTTT
TTTCTTTTATTTTTTTACGAGCTGCTCTAATAACAGAGAGATGCTGTATT
CGACTGTTCAAGGTTTTCGATGTTGGGTGTCTTCTCTTTGTAGCACTGTT
GTCTGTTTCGTTTAGTCTTCCCGGCGTTACCAGGGAGAACGAAGCGTGTG
GTCTCGTGCTGTTTGCCACACGTACGCCGCTGCTGCTGCTACTGCTGCTC
TGCTGCTGTTGGTGGTGGTGCCGTACGCTACTGCTACGTGCTGCTGCGTG
CTGCGGCGTACCAGTTTTGTTTTGTTTTTCGGGGGAGACTTGCGGCTGCT
GTGTTTAGTGCTGTAGTGCTCGCTTGTAGTGCTTGTGGCCTTGTGTAGTC
GGGGGGCGAAACTGATGTCCTTCTTGTGATCGTCTCGTCCAAAAGGGAGG
TGAGGGCGAGATTGGGGAGAAAGTGAGAGCGAGAAAGAGAGAGACAGAAA
GACAGGAGGTCCTCATATTCGTTGTTTGTGATTTTCTCTTGGCGAGGGAG
AGAGACAGGGCGGA
back to top

Coding sequence (CDS) from alignment at Scaffold_486:112636..115449+

>EsuBft1035_3a-0001 ID=EsuBft1035_3a-0001|Name=EsuBft1035_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=276bp|location=Sequence derived from alignment at Scaffold_486:112636..115449+ (Ectocarpus subulatus male Bft15b)
ATGGTGTCGAGGTTCATGGTGATGCCACTGGTCGCGGCTATGCTTCTCTT
TTCCGGCGCCAAGGCAAAGCTGATCCCGTATGACAAGCTGGTCTGGTTCG
TCCTCCTCATGGAAGGGTGCATGCCGTCGGCGCAGAACAGCGTGGTGATC
CTGCAGATGGAGAAGAAGCCGGAGCTGGCCTCTTCGATGGCCAAGACCCT
GACGGCGGTGTATCTCCTCTCGGCGGTGCCCATCGCCTTCCTGCTGTCCG
CCATCCTACAGTTCGTGCAGCTCTGA
back to top