EsuBft1032_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1032_9a-0001
Unique NameEsuBft1032_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_578contigScaffold_578:148400..149518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1032_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length61
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_9aEsuBft1032_9aEctocarpus subulatus male Bft15bgeneScaffold_578 148400..149518 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_9a-0001-exonagat-exon-45741Ectocarpus subulatus male Bft15bexonScaffold_578 148400..148946 -
EsuBft1032_9a-0001-exonEsuBft1032_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_578 149447..149518 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_9a-0001-exonagat-three_prime_utr-326Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_578 148400..148469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_9a-0001-cdsEsuBft1032_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_578 148470..148946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_9a-0001EsuBft1032_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_578 148470..149518 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1032_9a-0001 ID=EsuBft1032_9a-0001|Name=EsuBft1032_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=619bp|location=Sequence derived from alignment at Scaffold_578:148400..149518- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTCGACTGCGGCCCTCACGCTGGAAACGGCACGCAGATCCCTAG
CGCTGTTTCCATCGGAACCCAGGCCAACGTCAACGACACCGTCGACCTTT
CTGCCGCCGACATTGAATGGGGCGGCTCGCCCAACGCCGCCGCCACCGCC
ATCCTGCGCAACCGGTTCATCCACAAGAAACGCAAACCTTCGCGGACCCG
CGACGGCAAGGGCAAAAAGCGTCGGGTCCAGCCCGACACCCCTTTTGTCG
ACGAAGAGTTCGAGGACGACGATGGCGACGAAGACTCAAGTCCGAACGCA
CTGACAGCAATGACGACGACGAAGACGAAGAGATTAACGGCGAGGAAGAA
CATGGATACGGAGCCCAGGAGGACGAACAAGGGGATGGAGGAGACGAAGA
TGACGATGAGGGCGAAGAGGATGAAGGAGAAGAAGAGGACGAAGAAGATG
GAGAAGATGACAGCGACGACAACAGCGACGACGACAGCGACGACGAACGA
GTCCTGTATTATGTGTACTTTGTCGTTGCGCGTACGGTTCACGTTGTGAT
CATGGTTGAAGACATCGTGTCCCTACTCGTCCCTGTCCGAACAAACTTGG
GTTCCTTTTCCGAGCTCGT
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protein sequence of EsuBft1032_9a-0001

>EsuBft1032_9 ID=EsuBft1032_9|Name=EsuBft1032_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=182bp
MAVDCGPHAGNGTQIPSAVSIGTQANVNDTVDLSAADIEWGGSPNAAATA
ILRNRFIHKKRKPSRTRDGKGKKRRVQPDTPFVDEEFEDDDGDEDSSPNA
LTAMTTTKTKRLTARKNMDTEPRRTNKGMEETKMTMRAKRMKEKKRTKKM
EKMTATTTATTTATTNESCIMCTLSLRVRFTL
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mRNA from alignment at Scaffold_578:148400..149518-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1032_9a-0001 ID=EsuBft1032_9a-0001|Name=EsuBft1032_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1119bp|location=Sequence derived from alignment at Scaffold_578:148400..149518- (Ectocarpus subulatus male Bft15b)
ATGGCGGTCGACTGCGGCCCTCACGCTGGAAACGGCACGCAGATCCCTAG
CGCTGTTTCCATCGGAACCCAGGTATATCAGTTTCTCACTGCACGCAATC
TTACGCTCTTTAAAGTATTGACTGAAGTTGGCGTCCTTCTTCCGCGTAGC
TTTTCAGTGCGATTGGACTTAAGCTCTGCATGACCCTCAACAGCCTAAAA
TCACCTCCCCTGCGTACTATCAACCCCACATGCCACGTTTGAGCAATCAC
CACCACCTGTCCTGCTTGCTTCTCCGTTCGATACTTCTTTATCGTTCCAC
AATCCTCGCTGTGCCTCTCACTACATTCCGTCGTGTCCTCCCACCCATTT
CCACCTTACGCAGGCCCTCAAGGAACTCTTCCGCTGTGACGATGAGGAGT
TCACCCTCATGGACGACGCCGGCAAGCAACAGCGTGCGCGCTGACCAGTC
GGCGTGACTTTCGTTGCGGCCGTCCAGAGAAAGAAGTTGGGTGTTCAAGG
GCGCTATGGGTATCACGTTGTTGCCCTCTCCAACGACATTGACGTTATCG
AGCGTCCCAACGACACCACAAGGCCAACGTCAACGACACCGTCGACCTTT
CTGCCGCCGACATTGAATGGGGCGGCTCGCCCAACGCCGCCGCCACCGCC
ATCCTGCGCAACCGGTTCATCCACAAGAAACGCAAACCTTCGCGGACCCG
CGACGGCAAGGGCAAAAAGCGTCGGGTCCAGCCCGACACCCCTTTTGTCG
ACGAAGAGTTCGAGGACGACGATGGCGACGAAGACTCAAGTCCGAACGCA
CTGACAGCAATGACGACGACGAAGACGAAGAGATTAACGGCGAGGAAGAA
CATGGATACGGAGCCCAGGAGGACGAACAAGGGGATGGAGGAGACGAAGA
TGACGATGAGGGCGAAGAGGATGAAGGAGAAGAAGAGGACGAAGAAGATG
GAGAAGATGACAGCGACGACAACAGCGACGACGACAGCGACGACGAACGA
GTCCTGTATTATGTGTACTTTGTCGTTGCGCGTACGGTTCACGTTGTGAT
CATGGTTGAAGACATCGTGTCCCTACTCGTCCCTGTCCGAACAAACTTGG
GTTCCTTTTCCGAGCTCGT
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Coding sequence (CDS) from alignment at Scaffold_578:148400..149518-

>EsuBft1032_9a-0001 ID=EsuBft1032_9a-0001|Name=EsuBft1032_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=549bp|location=Sequence derived from alignment at Scaffold_578:148400..149518- (Ectocarpus subulatus male Bft15b)
ATGGCGGTCGACTGCGGCCCTCACGCTGGAAACGGCACGCAGATCCCTAG
CGCTGTTTCCATCGGAACCCAGGCCAACGTCAACGACACCGTCGACCTTT
CTGCCGCCGACATTGAATGGGGCGGCTCGCCCAACGCCGCCGCCACCGCC
ATCCTGCGCAACCGGTTCATCCACAAGAAACGCAAACCTTCGCGGACCCG
CGACGGCAAGGGCAAAAAGCGTCGGGTCCAGCCCGACACCCCTTTTGTCG
ACGAAGAGTTCGAGGACGACGATGGCGACGAAGACTCAAGTCCGAACGCA
CTGACAGCAATGACGACGACGAAGACGAAGAGATTAACGGCGAGGAAGAA
CATGGATACGGAGCCCAGGAGGACGAACAAGGGGATGGAGGAGACGAAGA
TGACGATGAGGGCGAAGAGGATGAAGGAGAAGAAGAGGACGAAGAAGATG
GAGAAGATGACAGCGACGACAACAGCGACGACGACAGCGACGACGAACGA
GTCCTGTATTATGTGTACTTTGTCGTTGCGCGTACGGTTCACGTTGTGA
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