EsuBft1032_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1032_12a-0001
Unique NameEsuBft1032_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_578contigScaffold_578:186579..190760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1032_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length401
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_12aEsuBft1032_12aEctocarpus subulatus male Bft15bgeneScaffold_578 186579..190760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_12a-0001EsuBft1032_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_578 190490..190657 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_12a-0001-exonagat-exon-45753Ectocarpus subulatus male Bft15bexonScaffold_578 186579..188517 -
EsuBft1032_12a-0001-exonEsuBft1032_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_578 188645..189948 -
EsuBft1032_12a-0001-exonagat-exon-45754Ectocarpus subulatus male Bft15bexonScaffold_578 189991..190760 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_12a-0001-exonagat-three_prime_utr-315Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_578 186579..188517 -
EsuBft1032_12a-0001-exonagat-three_prime_utr-316Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_578 188645..189948 -
EsuBft1032_12a-0001-exonagat-three_prime_utr-317Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_578 189991..190489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_12a-0001-cdsEsuBft1032_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_578 190490..190657 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_12a-0001-exonagat-five_prime_utr-187Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_578 190658..190760 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1032_12a-0001 ID=EsuBft1032_12a-0001|Name=EsuBft1032_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4013bp|location=Sequence derived from alignment at Scaffold_578:186579..190760- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTCGATCAAGCAACTAGTTCACAATGGTCGACGACATCACCATATCCT
TGTCTACCTCGACCCCTCCGTTGGCATCGTATCGAAAATAAATTCCTTCT
GGTATGGCGGGTATGGAAGGAAGCTTCACAGATCTTCGATCAACACGAGA
AGTCCTTGATCTGCTGAATAATGGAGGCGAATCGGTGCTTTGGGAGGTAC
TTGGTCGCGACATCAGCCAACTGGTGCTCGCTGAGCCGGTGGTGAAGAGT
GATTTGTCCCCGCAGTACTAGCTCCCGGATGAAAAAGAACGGCCAGGGTG
TCGTTCCAGAGCGCCGGCGACTGCGATAGGTCGTAGAGGCTCCGTTCTAG
TTTGTACACCATGGGTTCTCCCGTCGCGGAGTTCTTGGCGGATGTACCGG
GGGCGGGTCTGACGTGCACATCTCTGTCGCAGAGGGCGTTCAGGAAGGCA
CCGACAACGTCCAGTTGGTAGATGGGCCAGTTGTTGTGGCAGCCAATGGC
GCACGTCATGCGAATGCTCCCGATACGGCATACTGCGTAGCTGCGTCCGT
AGTCCTGTCCTGGCTCTTGACGATGTCCTCCGACTACCAGGCGAGCTTTG
AAGCGTCCGTCCAGCTTATTCTTGTAGACTAATTTCGTTCCGAGGATCTG
CTCTCCCTTGGGAACGCTGCTGAGGGGCACCAGATTGTAGACGTTGTCTT
CCCGCAGATCGTCCATTTCCTCGCTGCACGCTCCTTTCCATTCTTCGCGC
TGGGGAGAGCTCATGGCTTCGTGTTGGGGATTTCGATCGCTTGATTCGTC
TCCTCCAAGATCCCGTGGTGTTCGTGAGTGGTCGTGACGTAGGCGTGAGC
ACGCGGCACCGTGAAGGGGTCTTCCGCAACGTGGGCGAAATCCTCAGTAT
CGCCAGGGCATGGGAGCTGGGCTTGATCGGCCTTCTCAGCCAGCTGAGTG
AAGGAAAGACCGGATGGCTCCACGCGGCCCGTTGTAGCATGGGCTCGACC
GCGGTCGTTCATGGTGACTTCCAGATTGGCAGGAACCACGTTGACGTCAA
TATGATCGTCGCTGGTGGGCTTCCCGCGCGTGCTGGCTCTGGTGACTTGC
AGGCGCCGCATGCCGGAGGATCCAGTTGATGCAGAAGTGTCCGGTTCAGT
CGGGTTCGACGATGATGGACTGGGGCTAGATGCGTGGGTCTCGGATGACG
ATCCAGCTGGCGTCGATGGGAGATGTGGTGATGGAGCGTCCCCGTCGCCG
AGATCTTGCCCGTTTCCATGTTCGTCCTCGTGCCCGTCCAGTTCTAGGCG
AAGCTTCTCCCGAGCGAGATTGTCTTGCTGCATCTTCCGGACTTCTTGCC
GAAGGAGTTCGTTCTGCGCCGTGAAGTCCAGGTCGCTCGTCGAGTGGGGG
CTGTCCAGCAGGGAGGTGAAGCTCAGCACGTCGCTCTCGTACCCGTTTGC
TTCAGTGGAATACTGGATGTGCACTGAGAGGGGTGGAGATTCGATGAAAG
TCACATTCCGACTCTCGACCACTGCCCTGTTGGATGGATTCAATACCCGG
TAGGTCTGGCTGTCGAGGCCGAAACCACATAGCTTGCCTTCGAAAGCTCT
GTCGTCCAGCTTCTTTCGGTATCTCTCGTGGTGTACGAAGGCGCGCGCTC
CAATGACCCGAAGTCCCGAGAGATCAGGTGACTTATTGTGCAACTTCGAG
TATGGCGTAGCTCCTCCCAGTGCTGAGTGTGGGGACCTGTTCAACAGGTA
TGCTGCAGTCAGCATTAACTCCCCCCATATGGACGGCGGAAAATCTTCAT
CCTTCAGAAGACACCGGGTGACTCCGGCCAGGGTTTGTCCGTCCCGTTCC
GATACACCAATTTGTTGAGGGGTGTTGGTGGCGGCGTATTCGAGCTTGAT
AGCTGAATTCTTGCAGTAGTCCCGAAATTCGGATCCGGTGTTCTCGCCTC
CCTTGTCGCAGCGGATGGTCTCGATCCGGTAGCCTCCTGCCGCTGCGACG
CACATGTTGTACGTGTGCACCGCCTCGGTCGTGTCAGATTTCTTGCGACG
CAGGTACACTTCTTTCATTTTCGTTCGTCGGTGATCTTGCACGCGTACGG
GAAGGAGCCTCCTTTATATTTCGCAGGTGGATTAACAGGCCCCATGTTGT
CGATGACCACAAGCTGTCCAGGCCGTGATAGTTCGCGAGTCGATTGCTTC
GGGTGGGGGGACTGCTTGTGTTTCGCGATCTGGCAGACTCCGCAAGCGAA
GAGACTGTCGCGATAGTCCACCCCGGTACCCGTGTCCTTCCGAAGGATGT
CCAGGCTCCGAGCATTGAGATGTCCAAGCCTCCTGTGCCAGGTGTCCGCG
CTCACTAGCGTAAAGCAGACGGCGTTCGCCGTGTGGGTCTGTGACTGCTT
CTGGTGGGGCACGAGGGATTTCGTGCCAGATGGCTGGACGTTCCGCTCGA
ACGTGATGTCGAGGGTGCACATGCCTTGGTCTCGCGGATCTTGTGTGAGT
GGAATCACCTTGCCTTGGATAGTGAAGTGCGGAGTGCTCTCTTCGACTAC
GCAGCGCAATCCCTTTTTCAGGAGGGAGGTGGGCGAAAAAATGTTGCGAC
CAAGTCCCGGAACGATGAGTCCCTGAATCCGCACGCGCAATTGCTGTCCT
CGATTGTCCTTGACGGTGCAGTGTAGGATGCCCGTGGCCGTGCCTTTGAG
TTGTCTTTCTCCGGCCACGTCCACGATCTTTGGAGAGTTTCGCTGGGTGT
AATCGTGGAGGTTTCCGTCGGGGATGAGGCGATTGTCAAACATGGTCTCC
GATGCTCCCGTGTCTACCAGCAGGCCTACTCCGGTGGAACTCGCGGCGAA
GTTGCGTCCTGAGATGCGGGAACACGTGCCGAACATGAAGCCGCTGTCAA
AGGCGTCCTCGTCCCGGGTGAAGTCGACAACTGCCACTTCATTGTTTGAG
TCGTGCTTGTTGGACGCCGACGAGCAGTGAGTGCAGTTGGAGCACGCGGT
GAATGCTTTACTTGAGTCCTTGGTGTCTTCCGGGCGCTTTCCTCCTTGCT
GGTAGCATTCCTCGTCCGAGTGAGACGTGGTGTTGTGCTTGGAGCACCAC
TTGGTAGCTCCGGCGGGCTTCGTTTTCTTCTTCGCCCTGTTCTTGATCTT
GGGGCAGTTCCTCCTGATGTGCCCCGGCTCGTAGCAGCTGTGGCAGATGA
TGTCAGACGCGGTCGTTGCCATGGCAAATCCTCGACCAGCTATGCGTCCC
TTCCATCCCTTGCGCGATTGTTCGTCCAAGAAGATGTTGCGCATGGTGGA
TTGCATGTCCAGGACGTTGAAGGTTGGGTCTCTGAACACCATCAGTTTGA
CGTCCTTGTATTCGTCGGAGAAGCCCTGTACGCAGATGTCCTTGAAGCGG
CGGTCGGAGATGGGTTCTCCCATCTTATCCAGCTGGGTGCGAAGTAGGTG
CTTCTGGTTGAAGTAGTCGTCGGGATTTTCACCAGGGTTCATGGGGTTGT
TCTCCAGCTCCTCCATCTTCGCCCTGATGACCTCGTCCGTTACCCTGTCA
TAGTTGTTGCAGAGCTCCTCGAAGGCAGCTTGTCCGTCGCCGCTGACGCC
AGTGTCGTCTTCGTGCTTCTGTATCGACAAGGCGGCTGGAAGCTCCACTA
GGAGGAAAAGAATGGCGTAGAGATCTTCGTTTGCTCTTGTGTAGGAGTCG
AAGGCCGCTGTGTCTGCGGGATCTGGCTTCCTTTGTTTCTTCAGCAGTGG
CAGGATGTCCTTCCTGGTCACATCTAACACCACGCATAATTTCTTCATCC
ATGTCTTGAACTCAGCTGGGTCCTTTCCGTCGAATTTCCTGAGGCCTTTG
ATCACGGTTGCCAGGATCGTAGACTATCGCTGGCGAACGCGCTTCCACCT
CCTGTGTTGCTCGTTGCGGTATCCATTGCTCCTTCCAGCTTTATTTTCTT
CGTCTTGATAAAAGTACTTCCTGCTGTAGGTGTAAGTTTGCTCGTGGTAC
TACTGCCTGTCCT
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protein sequence of EsuBft1032_12a-0001

>EsuBft1032_12 ID=EsuBft1032_12|Name=EsuBft1032_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MAGMEGSFTDLRSTREVLDLLNNGGESVLWEVLGRDISQLVLAEPVVKSD
LSPQY
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mRNA from alignment at Scaffold_578:186579..190760-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1032_12a-0001 ID=EsuBft1032_12a-0001|Name=EsuBft1032_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4182bp|location=Sequence derived from alignment at Scaffold_578:186579..190760- (Ectocarpus subulatus male Bft15b)
CCCTCGATCAAGCAACTAGTTCACAATGGTCGACGACATCACCATATCCT
TGTCTACCTCGACCCCTCCGTTGGCATCGTATCGAAAATAAATTCCTTCT
GGTATGGCGGGTATGGAAGGAAGCTTCACAGATCTTCGATCAACACGAGA
AGTCCTTGATCTGCTGAATAATGGAGGCGAATCGGTGCTTTGGGAGGTAC
TTGGTCGCGACATCAGCCAACTGGTGCTCGCTGAGCCGGTGGTGAAGAGT
GATTTGTCCCCGCAGTACTAGCTCCCGGATGAAAAAGAACGGCCAGGGTG
TCGTTCCAGAGCGCCGGCGACTGCGATAGGTCGTAGAGGCTCCGTTCTAG
TTTGTACACCATGGGTTCTCCCGTCGCGGAGTTCTTGGCGGATGTACCGG
GGGCGGGTCTGACGTGCACATCTCTGTCGCAGAGGGCGTTCAGGAAGGCA
CCGACAACGTCCAGTTGGTAGATGGGCCAGTTGTTGTGGCAGCCAATGGC
GCACGTCATGCGAATGCTCCCGATACGGCATACTGCGTAGCTGCGTCCGT
AGTCCTGTCCTGGCTCTTGACGATGTCCTCCGACTACCAGGCGAGCTTTG
AAGCGTCCGTCCAGCTTATTCTTGTAGACTAATTTCGTTCCGAGGATCTG
CTCTCCCTTGGGAACGCTGCTGAGGGGCACCAGATTGTAGACGTTGTCTT
CCCGCAGATCGTCCATTTCCTCGCTGCACGCTCCTTTCCATTCTTCGCGC
TGGGGAGAGCTCATGGCTTCGTCGTAGGTGTTGGGGATTTTGATCGCTTG
ATTCGTCTNTAGGTGTTGGGGATTTCGATCGCTTGATTCGTCTCCTCCAA
GATCCCGTGGTGTTCGTGAGTGGTCGTGACGTAGGCGTGAGCACGCGGCA
CCGTGAAGGGGTCTTCCGCAACGTGGGCGAAATCCTCAGTATCGCCAGGG
CATGGGAGCTGGGCTTGATCGGCCTTCTCAGCCAGCTGAGTGAAGGAAAG
ACCGGATGGCTCCACGCGGCCCGTTGTAGCATGGGCTCGACCGCGGTCGT
TCATGGTGACTTCCAGATTGGCAGGAACCACGTTGACGTCAATATGATCG
TCGCTGGTGGGCTTCCCGCGCGTGCTGGCTCTGGTGACTTGCAGGCGCCG
CATGCCGGAGGATCCAGTTGATGCAGAAGTGTCCGGTTCAGTCGGGTTCG
ACGATGATGGACTGGGGCTAGATGCGTGGGTCTCGGATGACGATCCAGCT
GGCGTCGATGGGAGATGTGGTGATGGAGCGTCCCCGTCGCCGAGATCTTG
CCCGTTTCCATGTTCGTCCTCGTGCCCGTCCAGTTCTAGGCGAAGCTTCT
CCCGAGCGAGATTGTCTTGCTGCATCTTCCGGACTTCTTGCCGAAGGAGT
TCGTTCTGCGCCGTGAAGTCCAGGTCGCTCGTCGAGTGGGGGCTGTCCAG
CAGGGAGGTGAAGCTCAGCACGTCGCTCTCGTACCCGTTTGCTTCAGTGG
AATACTGGATGTGCACTGAGAGGGGTGGAGATTCGATGAAAGTCACATTC
CGACTCTCGACCACTGCCCTGTTGGATGGATTCAATACCCGGTAGGTCTG
GCTGTCGAGGCCGAAACCACATAGCTTGCCTTCGAAAGCTCTGTCGTCCA
GCTTCTTTCGGTATCTCTCGTGGTGTACGAAGGCGCGCGCTCCAATGACC
CGAAGTCCCGAGAGATCAGGTGACTTATTGTGCAACTTCGAGTATGGCGT
AGCTCCTCCCAGTGCTGAGTGTGGGGACCTGTTCAACAGGTATGCTGCAG
TCAGCATTAACTCCCCCCATATGGACGGCGGAAAATCTTCATCCTTCAGA
AGACACCGGGTGACTCCGGCCAGGGTTTGTCCGTCCCGTTCCGATACACC
AATTTGTTGAGGGGTGTTGGTGGCGGCGTATTCGAGCTTGATAGCTGAAT
TCTTGCAGTAGTCCCGAAATTCGGATCCGGTGTTCTCGCCTCCCTTGTCG
CAGCGGATGGTCTCGATCCGGTAGCCTCCTGCCGCTGCGACGCACATGTT
GTACGTGTGCACCGCCTCGGTCGTGTCAGATTTCTTGCGACGCAGGTACA
CTTCTTTCATTTTCGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTAGTCGTCGG
TGATCTTGCACGCGTACGGGAAGGAGCCTCCTTTATATTTCGCAGGTGGA
TTAACAGGCCCCATGTTGTCGATGACCACAAGCTGTCCAGGCCGTGATAG
TTCGCGAGTCGATTGCTTCGGGTGGGGGGACTGCTTGTGTTTCGCGATCT
GGCAGACTCCGCAAGCGAAGAGACTGTCGCGATAGTCCACCCCGGTACCC
GTGTCCTTCCGAAGGATGTCCAGGCTCCGAGCATTGAGATGTCCAAGCCT
CCTGTGCCAGGTGTCCGCGCTCACTAGCGTAAAGCAGACGGCGTTCGCCG
TGTGGGTCTGTGACTGCTTCTGGTGGGGCACGAGGGATTTCGTGCCAGAT
GGCTGGACGTTCCGCTCGAACGTGATGTCGAGGGTGCACATGCCTTGGTC
TCGCGGATCTTGTGTGAGTGGAATCACCTTGCCTTGGATAGTGAAGTGCG
GAGTGCTCTCTTCGACTACGCAGCGCAATCCCTTTTTCAGGAGGGAGGTG
GGCGAAAAAATGTTGCGACCAAGTCCCGGAACGATGAGTCCCTGAATCCG
CACGCGCAATTGCTGTCCTCGATTGTCCTTGACGGTGCAGTGTAGGATGC
CCGTGGCCGTGCCTTTGAGTTGTCTTTCTCCGGCCACGTCCACGATCTTT
GGAGAGTTTCGCTGGGTGTAATCGTGGAGGTTTCCGTCGGGGATGAGGCG
ATTGTCAAACATGGTCTCCGATGCTCCCGTGTCTACCAGCAGGCCTACTC
CGGTGGAACTCGCGGCGAAGTTGCGTCCTGAGATGCGGGAACACGTGCCG
AACATGAAGCCGCTGTCAAAGGCGTCCTCGTCCCGGGTGAAGTCGACAAC
TGCCACTTCATTGTTTGAGTCGTGCTTGTTGGACGCCGACGAGCAGTGAG
TGCAGTTGGAGCACGCGGTGAATGCTTTACTTGAGTCCTTGGTGTCTTCC
GGGCGCTTTCCTCCTTGCTGGTAGCATTCCTCGTCCGAGTGAGACGTGGT
GTTGTGCTTGGAGCACCACTTGGTAGCTCCGGCGGGCTTCGTTTTCTTCT
TCGCCCTGTTCTTGATCTTGGGGCAGTTCCTCCTGATGTGCCCCGGCTCG
TAGCAGCTGTGGCAGATGATGTCAGACGCGGTCGTTGCCATGGCAAATCC
TCGACCAGCTATGCGTCCCTTCCATCCCTTGCGCGATTGTTCGTCCAAGA
AGATGTTGCGCATGGTGGATTGCATGTCCAGGACGTTGAAGGTTGGGTCT
CTGAACACCATCAGTTTGACGTCCTTGTATTCGTCGGAGAAGCCCTGTAC
GCAGATGTCCTTGAAGCGGCGGTCGGAGATGGGTTCTCCCATCTTATCCA
GCTGGGTGCGAAGTAGGTGCTTCTGGTTGAAGTAGTCGTCGGGATTTTCA
CCAGGGTTCATGGGGTTGTTCTCCAGCTCCTCCATCTTCGCCCTGATGAC
CTCGTCCGTTACCCTGTCATAGTTGTTGCAGAGCTCCTCGAAGGCAGCTT
GTCCGTCGCCGCTGACGCCAGTGTCGTCTTCGTGCTTCTGTATCGACAAG
GCGGCTGGAAGCTCCACTAGGAGGAAAAGAATGGCGTAGAGATCTTCGTT
TGCTCTTGTGTAGGAGTCGAAGGCCGCTGTGTCTGCGGGATCTGGCTTCC
TTTGTTTCTTCAGCAGTGGCAGGATGTCCTTCCTGGTCACATCTAACACC
ACGCATAATTTCTTCATCCATGTCTTGAACTCAGCTGGGTCCTTTCCGTC
GAATTTCCTGAGGCCTTTGATCACGGTTGCCAGGATCGTAGACTATCGCT
GGCGAACGCGCTTCCACCTCCTGTGTTGCTCGTTGCGGTATCCATTGCTC
CTTCCAGCTTTATTTTCTTCGTCTTGATAAAAGTACTTCCTGCTGTAGGT
GTAAGTTTGCTCGTGGTACTACTGCCTGTCCT
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Coding sequence (CDS) from alignment at Scaffold_578:186579..190760-

>EsuBft1032_12a-0001 ID=EsuBft1032_12a-0001|Name=EsuBft1032_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_578:186579..190760- (Ectocarpus subulatus male Bft15b)
ATGGCGGGTATGGAAGGAAGCTTCACAGATCTTCGATCAACACGAGAAGT
CCTTGATCTGCTGAATAATGGAGGCGAATCGGTGCTTTGGGAGGTACTTG
GTCGCGACATCAGCCAACTGGTGCTCGCTGAGCCGGTGGTGAAGAGTGAT
TTGTCCCCGCAGTACTAG
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