EsuBft10327_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft10327_2a-0001
Unique NameEsuBft10327_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_356contigScaffold_356:526056..527226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LKU5
ProteomeIdEsuBft10327_2
Protein domainsIPR012317
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length16
Hectar predicted targeting categoryno signal peptide or anchor
Evalue5.67e-20
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K06972
Descriptiondetermination of stomach left/right asymmetry
COG categoryC
BRITEko00000,ko01000,ko01002
Cross References
External references for this mRNA
DatabaseAccession
GO0003950
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft10327_2aEsuBft10327_2aEctocarpus subulatus male Bft15bgeneScaffold_356 526056..527226 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft10327_2a-0001-exonagat-exon-37878Ectocarpus subulatus male Bft15bexonScaffold_356 526056..526148 -
EsuBft10327_2a-0001-exonEsuBft10327_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_356 527152..527226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft10327_2a-0001-cdsEsuBft10327_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_356 526056..526148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft10327_2a-0001EsuBft10327_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_356 526056..527226 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft10327_2a-0001 ID=EsuBft10327_2a-0001|Name=EsuBft10327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=168bp|location=Sequence derived from alignment at Scaffold_356:526056..527226- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAGACCAAGAGTACTAGGCTCCCGGCAAACCAGTGCCCGCCTCC
TGGTTGTCAATCTGTGGTGGGAGAGGTGGGCCAAGGGCTGAACTTCGACG
AGTTCGTGGTGTACAATGAGGAGGCCGCTCTGCCAACTCACCTCATCGTG
TATGCTCTTCGGCACTAA
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protein sequence of EsuBft10327_2a-0001

>EsuBft10327_2 ID=EsuBft10327_2|Name=EsuBft10327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MFKTKSTRLPANQCPPPGCQSVVGEVGQGLNFDEFVVYNEEAALPTHLIV
YALRH
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mRNA from alignment at Scaffold_356:526056..527226-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft10327_2a-0001 ID=EsuBft10327_2a-0001|Name=EsuBft10327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1171bp|location=Sequence derived from alignment at Scaffold_356:526056..527226- (Ectocarpus subulatus male Bft15b)
ATGTTCAAGACCAAGAGTACTAGGCTCCCGGCAAACCAGTGCCCGCCTCC
TGGTTGTCAATCTGTGGTGGGAGAGGTATGTATTCCCCATCGAGTGAAGG
AAGTCCACTCTCTCTACAGACTACTGTAGACTTAGAAACAATGCCCTTGC
CATTGGCGTGGTTTCAGGTGCTACAATTCAGACCTTGGATTCCAGCCGCC
TCGACGTGATTGTCCCCAAACAAACCTGAGAAACGCGCACTGCCCCCCTT
TCCGTGGCTCAAAACTCCGTGTTCTCCGCCCCGTTACATTGAAAGCAAGA
GCTTGTCGTAGTCGGGAGTCTCTTCGTACTCCAAGCTGTACACAGCCGTG
GTTGTCCAGGCTGCAGCGCTTTCATTCTCGCGCTGTTTCGCGGTTGCGGG
AGTCGAGGTTGCGCTCCTGATCATGTGTCTGTGTGTGTACTAAATAGTGG
TTCACACAATATTACCGTATACGACAAAAGATGACACACCCCCTGGACCG
ATCTTCAAAGCTCGGTTACGCGACGGCGAAGAAAATGCATAAATACATTC
TCAGATAGCTCTCAATGAGATTGCTTCAATGCCGCTTTTTTCGGCGCTAT
GACTCGTTCTGCTGTTGAGAAATCGAGCCTCGAAAATCGGTCCGGGGGGT
GTGTTATTTTGCGTCGTATACGGTAGTCTACTGGAAAAACGTGATCAGTA
GATTTGTCATGACAGCATCGACGTCAGAATGTGTAGGTTGGAACTACCAA
CGTCTCGCTCGGCCTGGTCTCCCAGCGTTGAGCGGAAATCCACGAGGTGA
CATGCATACACGAACTCGTGACGAGGTCACCCCAAGACAATCGCTGTAAG
TCAAGCCAGGGTGATTTGGCGCGCTGCATTTTCCCGCCGGTCCTGTGTTT
TGCGGGACACGTTCGAGCATCACGAGGTCTCCCTCATCCGCAGATTGGAG
GTGGCGTCGGTTGATTTGGATTCCATGACTTGCGTGTTGTTTATCGCTGA
ATATCTGAGGTAGATGACATAATAGCCGCAGCGTTAGCCCAAATGCCACC
CGCCCAACCTCGGTCATCGCTCGGTCAGGTGGGCCAAGGGCTGAACTTCG
ACGAGTTCGTGGTGTACAATGAGGAGGCCGCTCTGCCAACTCACCTCATC
GTGTATGCTCTTCGGCACTAA
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Coding sequence (CDS) from alignment at Scaffold_356:526056..527226-

>EsuBft10327_2a-0001 ID=EsuBft10327_2a-0001|Name=EsuBft10327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_356:526056..527226- (Ectocarpus subulatus male Bft15b)
ATGTTCAAGACCAAGAGTACTAGGCTCCCGGCAAACCAGTGCCCGCCTCC
TGGTTGTCAATCTGTGGTGGGAGAGGTGGGCCAAGGGCTGAACTTCGACG
AGTTCGTGGTGTACAATGAGGAGGCCGCTCTGCCAACTCACCTCATCGTG
TATGCTCTTCGGCACTAA
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