EsuBft1031_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1031_8a-0001
Unique NameEsuBft1031_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:122324..125107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGJ4
ProteomeIdEsuBft1031_8
Protein domainsIPR008250
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsPTHR24092
Protein domainsSSF81653
Protein domainsTMhelix
Protein domainsIPR006539
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notephospholipid-transporting atpase ib os:mus musculus gn:atp8a2 pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length840
Hectar predicted targeting categoryother localisation
Evalue2.73e-169
EggNOG OGsCOG0474@1|root,KOG0206@2759|Eukaryota
Ec32 ortholog descriptionP-type ATPase, subfamily IV
Ec32 orthologEc-10_001840.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EC3.6.1.3,3.6.3.1
Descriptionphospholipid-translocating ATPase activity
COG categoryP
BRITEko00000,ko00001,ko01000,ko03009
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0010468
GO0051239
GO0015914
GO0004571
GO0098588
GO0051130
GO0004012
GO0005524
GO0051050
GO0016021
GO0015031
GO0009790
GO0050877
GO0048522
GO0005794
GO0000287
GO0009605
GO0001750
GO0009628
GO0006996
GO0009887
GO0007423
GO0098590
GO0048523
GO0031175
GO0060099
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_8aEsuBft1031_8aEctocarpus subulatus male Bft15bgeneScaffold_417 122324..125107 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_8a-0001-exonagat-exon-36802Ectocarpus subulatus male Bft15bexonScaffold_417 122324..122516 -
EsuBft1031_8a-0001-exonagat-exon-36801Ectocarpus subulatus male Bft15bexonScaffold_417 123217..123368 -
EsuBft1031_8a-0001-exonagat-exon-36800Ectocarpus subulatus male Bft15bexonScaffold_417 124282..124557 -
EsuBft1031_8a-0001-exonEsuBft1031_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 124889..125107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_8a-0001-cdsEsuBft1031_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 122324..122516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_8a-0001EsuBft1031_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 122324..125107 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1031_8a-0001 ID=EsuBft1031_8a-0001|Name=EsuBft1031_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=840bp|location=Sequence derived from alignment at Scaffold_417:122324..125107- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCCAGGTTGGTGAAGATCATAGACAAGGAAGAGATCCCCGCGGA
CGTTGTGCTCCTCACTTCCTCCGAGCCGGGAGGCGTCGCCTACATCGAGA
CGGCCAACATCGACGGAGAGACCAACCTCAAGATTAGGACCAGCGCGCCC
ACGCGGCCGGGGCAGCCGCCGGGGCCGCTGTGGCCCAGCGCCGAGGAGCT
GCACGGTGTCAGGATGGAGCTCGAGTACGAAGCTCCCAACGCTCGCATTC
ACTTCTTCACCGGCACCCTCACGCTCCACGACGGAGCGGGGGGCCCGCAA
GATGACTCCGGGGAAGGGGGTGGAGGCGGGACGGGCTCGCGCGACGTCCC
CGTGGACCAGAGCAACCTGCTGCTGCGGGGGGCGAGACTGAGGAACACGA
AGTGGGCGATCGGGGTGGTGGCCTACACGGGAAGGGAGTCGAAGATCGCG
CAGAACGCTCGGTCCGTGCCTTCGAAGCAGAGCAACCTCGACAAGGTGAC
GAACAAGATCATGTTTGTGATCTTCACGTGCATGGCCGTCGTGACCACCC
TGTCCTTAGTGGGTTACTTGGTCTTCGAGGCGGAGAACGATGACAAGCTC
TACTACCTCTGCTACGACTCCGACAACAGTCCCGTCCCGCTCTTCCGGGA
CAATTGCGAGTCCGCCGATTCTTCGAGCAGCGTGGGGCAGTGGTTTACGT
TCCTCATCCTGTACAACAACTTCGTCCCGATCAGCTTGTACGTTACCCTT
GAGATGGTGAACTTTATACAGGCCGCCTTCATCGACGAAGACATCCTGAT
GTACGACGAGACCCAGGTAAGGGCGGGGCAGGAAAAGTAA
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protein sequence of EsuBft1031_8a-0001

>EsuBft1031_8 ID=EsuBft1031_8|Name=EsuBft1031_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=279bp
MSPRLVKIIDKEEIPADVVLLTSSEPGGVAYIETANIDGETNLKIRTSAP
TRPGQPPGPLWPSAEELHGVRMELEYEAPNARIHFFTGTLTLHDGAGGPQ
DDSGEGGGGGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIA
QNARSVPSKQSNLDKVTNKIMFVIFTCMAVVTTLSLVGYLVFEAENDDKL
YYLCYDSDNSPVPLFRDNCESADSSSSVGQWFTFLILYNNFVPISLYVTL
EMVNFIQAAFIDEDILMYDETQVRAGQEK
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mRNA from alignment at Scaffold_417:122324..125107-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1031_8a-0001 ID=EsuBft1031_8a-0001|Name=EsuBft1031_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2784bp|location=Sequence derived from alignment at Scaffold_417:122324..125107- (Ectocarpus subulatus male Bft15b)
ATGTCCCCCAGGTTGGTGAAGATCATAGACAAGGAAGAGATCCCCGCGGA
CGTTGTGCTCCTCACTTCCTCCGAGCCGGGAGGCGTCGCCTACATCGAGA
CGGCCAACATCGACGGAGAGACCAACCTCAAGATTAGGACCAGCGCGCCC
ACGCGGCCGGGGCAGCCGCCGGGGCCGCTGTGGCCCAGCGCCGAGGAGCT
GCACGGTGTCAGGATGGAGGTTCGTGTGGGATGTTGTTGTTGTTGTTTTT
GTCCGGTTGTTATTGTGTTGACTGCAGCTGCAGCTGTTGGTGTTGGTGGT
GGTGATGGTCCTGCTGTCACCGTTTGGCGGTGACATGTTAACAGCTTTCA
TGGACTTGTTCTCCGCTTCACTCGCGTTCACAGCTGGAACACAAACCTCT
GAGCGCTAGCTTTCACCTGTTGCCATGTACCTGTTTGTGAAAATTGTTGC
CCACGATTGATGTTTGCGTCGGTGACCTATAGATAATGTATGCCTCTGGA
CAACTATCAAGCCCACCTGTCCCCCCGTTCTTACTCCTGTTGTCTGCCAG
CTCGAGTACGAAGCTCCCAACGCTCGCATTCACTTCTTCACCGGCACCCT
CACGCTCCACGACGGAGCGGGGGGCCCGCAAGATGACTCCGGGGAAGGGG
GTGGAGGCGGGACGGGCTCGCGCGACGTCCCCGTGGACCAGAGCAACCTG
CTGCTGCGGGGGGCGAGACTGAGGAACACGAAGTGGGCGATCGGGGTGGT
GGCCTACACGGGAAGGGAGTCGAAGATCGCGCAGAACGCTCGGTCCGTGC
CTTCGAAGCAGAGCAACCTCGACAAGGTGAAAGAAAGGACGCCTTTTTTG
AGTATGGCTGTTGCGTTGATTAGAGGAAAAAAAAAGGTTCTCTTAGTCTT
ATTTGCCCTGGCAGGACCCTCCGTCCGTGCCTACGAAGCAGAGCAAACTC
GATAAGGTGAAGAAACACGCCTGTTTGTGTGAGGCTATATTGGTTGGTCT
CTCTGTACTGCACGTACTCCGGGCACTCCGTCCGTGAACATCACTTGCAA
AACGCGTAGTAGAGCTCACCCACCTCTCACTATCCCTTGCCCCGCACCTG
CTTATTTTGGCCACCTTATCGAGTGTACCCGCTTTTTTTTGTTTCGCTCG
AAGGCGACGAACAAGACCATGTCCGTTATCTCTCCTTGCGAGTTCTCTCC
TTTTAATATTTTCTTGCACAGTAGGGAACCCTCAGTAGTGACGGTATAGA
CCAGACCGTTGCCAGTATACCGGCACTATTCTGAGGGACCGGCACTTTCA
ACGTACTGAATTACCAAGTAATTCAGTCTATGCGCGCCCGAAACACCGGC
TCTATGCCGGACGTCGACACTAGTCAACCGGCGCTTCTGAGGGCCCTTGT
CTGTACCCGTTTTTTTTTTCGGTGTTTTGTGGAAAGGTGACGAACAAGAT
CATGTCCATGATCTTTACCTGCCAATTCTCTGTTTTGTTGTTTTTTCTCG
CATGCGTACCCCCTTGTCGTGTTTTTCTTTGCTCTAATGGCGACGAACAA
GATCATGTTCGTGATCTTCACGTGCGACTTGTCTTTCTCGTTTTTTTTTT
TTTTCTCGTACCCCCTTATTTTTTGTTGTTCGATCAAAAGGTGACGAACA
AACTAATGTTCGTGATCTTCACGTGCGAATTCTCTCGTATTATTATTTTT
TTTTCTTGCTTCCCTTTTCATGTGTTGTTCGACCGAAAGGTGACGAACAA
GATCATGTTTGTGATCTTCACGTGCATGGCCGTCGTGACCACCCTGTCCT
TAGTGGGTTACTTGGTCTTCGAGGCGGAGAACGATGACAAGCTCTACTAC
CTCTGCTACGACTCCGACAACAGTCCCGTCCCGCTCTTCCGGTACGGTTT
TGATCACGTTTTGTTTTTTTGTTGGAAAACGCTGAAGCTTCCCTGAAGAC
TGCTGTGCGTGCTTTTTTCCCCGGCGATACTTGTTTGTTGGAAAAAAGTG
TGTTTTTTTTTCGCGGCCTTCTCGGAATGCGTCCGTAGGACTCGCTTTAG
CAGAATACTCGCCACTCCCAGTGATCTTTAATACGCGTTGTGCAAGGCGT
GTGTCCCTCTTGTTGTAGATGTGTGTGGTTTCCGTGGAATCTGACTGCTC
CGCATGTTTTTCGTAGATCTGTGTACTTGTCGTAGATCTGCATGTGTTTG
GTAGATCTGTATGCTCGTAGCAGATACGTACGATTGTATGCCCGCTGGGT
TTGGAAGTTGTCGAAAGCGACGACAGTGTTCGTTGATCTGCATGGTTTTC
GTACGTGAGTCCGCTTGTCGTAGACCTGCATGCGTTTGGTAGATCTGTAT
CCTCGTGGTTGATCAGTGTGTCTGTCGCAGGCCTGCATACTTCGGCGTGC
TGGAAGTTTGCGAAATCCACGACAGTCTTTGTACCCAAAAACCGACGTGT
TGGAGTTGGAAAGCCTCCTTCCGCCTTCGATTGGATGCCTCATTATCTCT
GCTGTTCACCTTTTCCTGGATATCTGCGCGTTCACCCCTGACGTGGCACG
TGTTCCTTTACGCGGTCGTCGTATGTACGTATGTGTACCAGGGACAATTG
CGAGTCCGCCGATTCTTCGAGCAGCGTGGGGCAGTGGTTTACGTTCCTCA
TCCTGTACAACAACTTCGTCCCGATCAGCTTGTACGTTACCCTTGAGATG
GTGAACTTTATACAGGCCGCCTTCATCGACGAAGACATCCTGATGTACGA
CGAGACCCAGGTAAGGGCGGGGCAGGAAAAGTAA
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Coding sequence (CDS) from alignment at Scaffold_417:122324..125107-

>EsuBft1031_8a-0001 ID=EsuBft1031_8a-0001|Name=EsuBft1031_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=840bp|location=Sequence derived from alignment at Scaffold_417:122324..125107- (Ectocarpus subulatus male Bft15b)
ATGTCCCCCAGGTTGGTGAAGATCATAGACAAGGAAGAGATCCCCGCGGA
CGTTGTGCTCCTCACTTCCTCCGAGCCGGGAGGCGTCGCCTACATCGAGA
CGGCCAACATCGACGGAGAGACCAACCTCAAGATTAGGACCAGCGCGCCC
ACGCGGCCGGGGCAGCCGCCGGGGCCGCTGTGGCCCAGCGCCGAGGAGCT
GCACGGTGTCAGGATGGAGCTCGAGTACGAAGCTCCCAACGCTCGCATTC
ACTTCTTCACCGGCACCCTCACGCTCCACGACGGAGCGGGGGGCCCGCAA
GATGACTCCGGGGAAGGGGGTGGAGGCGGGACGGGCTCGCGCGACGTCCC
CGTGGACCAGAGCAACCTGCTGCTGCGGGGGGCGAGACTGAGGAACACGA
AGTGGGCGATCGGGGTGGTGGCCTACACGGGAAGGGAGTCGAAGATCGCG
CAGAACGCTCGGTCCGTGCCTTCGAAGCAGAGCAACCTCGACAAGGTGAC
GAACAAGATCATGTTTGTGATCTTCACGTGCATGGCCGTCGTGACCACCC
TGTCCTTAGTGGGTTACTTGGTCTTCGAGGCGGAGAACGATGACAAGCTC
TACTACCTCTGCTACGACTCCGACAACAGTCCCGTCCCGCTCTTCCGGGA
CAATTGCGAGTCCGCCGATTCTTCGAGCAGCGTGGGGCAGTGGTTTACGT
TCCTCATCCTGTACAACAACTTCGTCCCGATCAGCTTGTACGTTACCCTT
GAGATGGTGAACTTTATACAGGCCGCCTTCATCGACGAAGACATCCTGAT
GTACGACGAGACCCAGGTAAGGGCGGGGCAGGAAAAGTAA
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