EsuBft1030_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1030_7a-0001
Unique NameEsuBft1030_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_600contigScaffold_600:107230..108544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog36080.S2JTQ2
ProteomeIdEsuBft1030_7
Protein domainsIPR006600
Protein domainsPTHR19303
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl36080.S2JTQ2|-
Length71
Hectar predicted targeting categoryother localisation
Evalue0.000515
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDNA binding
COG categoryCH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1030_7aEsuBft1030_7aEctocarpus subulatus male Bft15bgeneScaffold_600 107230..108544 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1030_7a-0001-exonEsuBft1030_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_600 107230..107775 -
EsuBft1030_7a-0001-exonagat-exon-107965Ectocarpus subulatus male Bft15bexonScaffold_600 108374..108544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1030_7a-0001-cdsEsuBft1030_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_600 107230..107775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1030_7a-0001EsuBft1030_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_600 107230..108544 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1030_7a-0001 ID=EsuBft1030_7a-0001|Name=EsuBft1030_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=717bp|location=Sequence derived from alignment at Scaffold_600:107230..108544- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGGACGCCATAGCTCTTGACCTACTAGA
GAAAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCT
TCGGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAG
GAAGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAG
GAACTTCGTGAAGCGCAACAGCATCGACAGCGTGAGACTTCATGGCGAGG
CTGGTAGCGTCAACAAGGAGGCCATCAAGGTGGAAGACATGACGGCACAG
CTGGCTGGGACTCGAGTGTCTACCGGCCGCGAGGAGGAGGACGAGGAGGA
GGACAGCGGCGATGACAACACGGGGCTCGCGCGCCGTGTCCCACCGGCTT
ATGGTGAACTGTCGTCTCACTTCGGCGTCCTGGAAGCGGCAGCAGAGGAG
AGCGGCAATGGAGACGCGGCGCTCTACCTAGCGAAAGCGAAGATGGCGAT
GATTGCAGCGCATTCCAAGAGGCGGGTGCGCCAGGCAGACATGAGGGAGT
TTGTTGCTACGGAGTAA
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protein sequence of EsuBft1030_7a-0001

>EsuBft1030_7 ID=EsuBft1030_7|Name=EsuBft1030_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=238bp
MLKLMDQKVTHEQLADRFKCSERLVRDVKKNRKKYETEAAAGRGGSKKNV
RTGNNPEVDAIALDLLEKARKTKMPVTRDVLRSFGRAARATLLADPAASK
EVKARVEDFKAGERWARNFVKRNSIDSVRLHGEAGSVNKEAIKVEDMTAQ
LAGTRVSTGREEEDEEEDSGDDNTGLARRVPPAYGELSSHFGVLEAAAEE
SGNGDAALYLAKAKMAMIAAHSKRRVRQADMREFVATE
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mRNA from alignment at Scaffold_600:107230..108544-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1030_7a-0001 ID=EsuBft1030_7a-0001|Name=EsuBft1030_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1315bp|location=Sequence derived from alignment at Scaffold_600:107230..108544- (Ectocarpus subulatus male Bft15b)
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGCGCTACTCTGCTGTTGTTTTAAAAAA
ATACGCGTAGTTCCCGCGCCTTCTTTGCCTTTTTTTTTTTGCCGGGCCTT
GTTTGCAAAGAGTTTTCGTTTTTGCAAGGACCTTTTTCTGTAGCCTTGTT
CGTCTATCTGATGTTCTTGTTCTTTTTTCTTCTTCTCTTGTCAAGTTGTT
CCCTGTTCTCTGTTCCCTTTCCCCATGTTTCTTCTATTTCTCGACTGTTA
CAGTACTTGTTGAGCTTATTCCCTCTCGTCGTTCGTTTGTGTCTTTTTTT
GTGTTACCTTTTTTTTCAACTTTCTTTGTTGTTTTATCGTTCGTGCGCTG
CTGCGCCAGCATATAAACTGCGAACCAAAAATGTGTACTTGTTTGTACTG
TACTGGTACATTACATCGCACGCACACCTATTCTTTCAAACGAGTTACAA
TACATAAATACACATGCGGATGCAGCGGCGAGCTTCTGTGGTTTTTCAAA
TGCCCGGAAATGTTTCCTTCCCACTACGATGCACTGTGCAACGAGGCTTA
ATGTTCGAAACTAATCGTGCTATCTTTTGTACCCTCTTTATTGTTTACTC
CTCGTTTGACGGTCAATAGGTGGACGCCATAGCTCTTGACCTACTAGAGA
AAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCTTC
GGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAGGA
AGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAGGA
ACTTCGTGAAGCGCAACAGCATCGACAGCGTGAGACTTCATGGCGAGGCT
GGTAGCGTCAACAAGGAGGCCATCAAGGTGGAAGACATGACGGCACAGCT
GGCTGGGACTCGAGTGTCTACCGGCCGCGAGGAGGAGGACGAGGAGGAGG
ACAGCGGCGATGACAACACGGGGCTCGCGCGCCGTGTCCCACCGGCTTAT
GGTGAACTGTCGTCTCACTTCGGCGTCCTGGAAGCGGCAGCAGAGGAGAG
CGGCAATGGAGACGCGGCGCTCTACCTAGCGAAAGCGAAGATGGCGATGA
TTGCAGCGCATTCCAAGAGGCGGGTGCGCCAGGCAGACATGAGGGAGTTT
GTTGCTACGGAGTAA
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Coding sequence (CDS) from alignment at Scaffold_600:107230..108544-

>EsuBft1030_7a-0001 ID=EsuBft1030_7a-0001|Name=EsuBft1030_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=717bp|location=Sequence derived from alignment at Scaffold_600:107230..108544- (Ectocarpus subulatus male Bft15b)
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGGACGCCATAGCTCTTGACCTACTAGA
GAAAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCT
TCGGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAG
GAAGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAG
GAACTTCGTGAAGCGCAACAGCATCGACAGCGTGAGACTTCATGGCGAGG
CTGGTAGCGTCAACAAGGAGGCCATCAAGGTGGAAGACATGACGGCACAG
CTGGCTGGGACTCGAGTGTCTACCGGCCGCGAGGAGGAGGACGAGGAGGA
GGACAGCGGCGATGACAACACGGGGCTCGCGCGCCGTGTCCCACCGGCTT
ATGGTGAACTGTCGTCTCACTTCGGCGTCCTGGAAGCGGCAGCAGAGGAG
AGCGGCAATGGAGACGCGGCGCTCTACCTAGCGAAAGCGAAGATGGCGAT
GATTGCAGCGCATTCCAAGAGGCGGGTGCGCCAGGCAGACATGAGGGAGT
TTGTTGCTACGGAGTAA
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