EsuBft102_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft102_7a-0001
Unique NameEsuBft102_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:277547..280642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLI5
ProteomeIdEsuBft102_7
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length142
Hectar predicted targeting categorysignal peptide
Evalue2.65e-143
EggNOG OGs2E2DA@1|root,2S9M9@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_001090.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft102_7aEsuBft102_7aEctocarpus subulatus male Bft15bgeneScaffold_372 277547..280642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_7a-0001EsuBft102_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 277581..280173 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_7a-0001-exonagat-exon-4540Ectocarpus subulatus male Bft15bexonScaffold_372 277547..277904 +
EsuBft102_7a-0001-exonagat-exon-4539Ectocarpus subulatus male Bft15bexonScaffold_372 278833..278948 +
EsuBft102_7a-0001-exonEsuBft102_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 279693..280642 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_7a-0001-exonagat-five_prime_utr-181Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 277547..277580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_7a-0001-cdsEsuBft102_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 277581..277904 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_7a-0001-exonagat-three_prime_utr-296Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 280174..280642 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft102_7a-0001 ID=EsuBft102_7a-0001|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1424bp|location=Sequence derived from alignment at Scaffold_372:277547..280642+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTCTTTCAACACCACCCACCAACAACAAGACAGATGCCGCTATTATACC
AGCCATGGTCGGCAATGCTGCTTTCTAGCTTGCTCGTGTCCGCCCCTTTC
GGTTCCGGAGTCATTGGGTTTAGCACGCCCTCTCTGTTCCGAGCAAGCTC
CTCAGCTGGAGGGCGCACGTACACCAGGCGGAGCAGATTCTGGAAGCATT
GTCCAGCAGGACGAACTACGTCGTCGATACCGAGTATGTCTTTGCCAGCG
GAGGGTGGGCCAACGAGCAGGAATCGGGCAATCGGACTTGGCGTGGCATC
TCTCTTCTCATTGGCCGTGGCCCCAACGCCTGGTCTTGCGCTTGACCCTG
TCCGCAAGGTACAAGAGCAACTACGCATCCGAGCACAGGAGGAGTTCGAT
AACGTAGAGGCTCTTGCTTCACCAGAGGGAGGCAAGACCCTCCAGCCGGT
TCTTGCTCTGGTACCCATCATCACGCTTCGACTGCAACTGGACGAGGTGG
AGAGCAATCTCAAAGATCCACGCCTGTTCGGAGCCGCGTTGACAATTCTG
CAAGCTCAAGACTTCCAGAAGAAAGACATCAAGCGCGTGTTCAACGCGTA
CAGCGACAACATCTACTACTTGCCGGATTCGGATCGGGAAAACAAGTACC
TCCAGGGCGGGGCGACGCCTTCCAGCCGACAAACGCTGCAGTATCTCCTC
CGAAACGATGTGATCGACAACGTCGAGGCTCTCACAGCGGAGATATCGTA
TCTAATCAGAGAGAGGGAGGTCGGGGGCGAGGCAGACACCGATGAGAAGG
ACTTGAGGATGTATTTGGGGAAGTGCAAGCAGAGCTTCGACAAGTACCTG
GGCATGGTGCTGCAGAACGAGATCGACGAGGCAACAGACATGGCAAAGGT
GGCCTTGGCCAACAAGAGAAAGGGAAATGCGCCCACTCCGGCGAAAACGC
TGTAGTAGCAGACCTCCTCGAACTAGATTGCTGCCGAGAACGGGGGGAGT
TTGTCCGATGCCGCTAGAAACCAGTAGAACGGTTTTGATCGTGCTCTTCC
TGTCTCGACAGCCTCCCGCCGATCCATCAGTCGCTATAGAGCGGTGGGAT
GTAGCTCTGTGTTGTTGATGGGTGTAGCAGTGTTAGAGTGCATGTTGTCA
AGATTTCAGTAGAACTGAAAAAAAAAAGGCTGCCACTCCAGTGGATAGGT
TAGTTCGCGATAGACTTCGTGTGGTGCACCTCGTCAATGATCTTGGAAGG
TGCGTAACAACAGAGTTGCGTCTCTCATGCACTTCAAAAGCTGAAAAGTG
TCTACAAGACGTGTTGGAAACCTGTGTTATTGTGGAGACGGAAGAACAAG
GTACAAACCACAATGCTTAGGTCATTGTAGACAAGAAGCGAGAAGTCGGG
GGTGGTCCAAAAAAACTAGCACGT
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protein sequence of EsuBft102_7a-0001

>EsuBft102_7 ID=EsuBft102_7|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=306bp
MPLLYQPWSAMLLSSLLVSAPFGSGVIGFSTPSLFRASSSAGGRTYTRRS
RFWKHCPAGRTTSSIPSMSLPAEGGPTSRNRAIGLGVASLFSLAVAPTPG
LALDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRL
QLDEVESNLKDPRLFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSD
RENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEISYLIREREVGGEA
DTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALANKRKGNAP
TPAKTL
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mRNA from alignment at Scaffold_372:277547..280642+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft102_7a-0001 ID=EsuBft102_7a-0001|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3096bp|location=Sequence derived from alignment at Scaffold_372:277547..280642+ (Ectocarpus subulatus male Bft15b)
TCTCTTTCAACACCACCCACCAACAACAAGACAGATGCCGCTATTATACC
AGCCATGGTCGGCAATGCTGCTTTCTAGCTTGCTCGTGTCCGCCCCTTTC
GGTTCCGGAGTCATTGGGTTTAGCACGCCCTCTCTGTTCCGAGCAAGCTC
CTCAGCTGGAGGGCGCACGTACACCAGGCGGAGCAGATTCTGGAAGCATT
GTCCAGCAGGACGAACTACGTCGTCGATACCGAGTATGTCTTTGCCAGCG
GAGGGTGGGCCAACGAGCAGGAATCGGGCAATCGGACTTGGCGTGGCATC
TCTCTTCTCATTGGCCGTGGCCCCAACGCCTGGTCTTGCGCTTGACCCTG
TCCGCAAGGTAGAGGTTGGAATCTCAAGAGCAGTACTTGCATACCGTATA
TGACACAAGATAACACACCCCCTGGACCGATTTTCAAAGCCCGATTACTC
CACGACAAAGAGGATGCACAAGCGAAACGATAAATTTTTCAAAAAGCTCT
CGACGAAAAGTTTTCAACGCCGCCGTTTTCGGCGCTGCAACTATTCCTGC
AGTTAAGAAATCGAGCTTCGAAAATTGGTCAAGGGGGTGTGTTATCTTGT
GTCATATACGGTAGTCTAACCCAAACTTGGCCAGCGCTGTACATGCCGTG
GCTGCTCCCCAGGCATGGATCCATGAACGAGTACAATATTTGCACCTAGG
CACAAGCCACATAGCTTGATAAGTAAGCGCTGAGAAGTGGTTCATGCAAC
ATCTTGCCAACAGAACACGAACTGTGGCAACTTTATTGCGGTGCATTCTT
GGAATACAACTGTGTAGAGGTGTACGTGCAGACTGCAGTAGACATAGCAC
TACAGCACATTCCAATCGGCAACGGCGAGCCAGACCGCGGTCATTTGGAG
GAAGTGCAACCTTTCGTGCCTGCACAGGCATCTTCGGATATGAAAACCAT
CGAAAAGCGCCTGCTGTTGGAACCTCCCGCCCTGCCAGAACTTCAAGCCA
TCATGATTGGTCTCTTGTTGTCTCGTCTTTCGACGATAGATTTGAAGTGC
GCGTTTGGGGTGGCAAGTTTCGAGGTGATATCAATGAGCTGGGTAATGGC
GACATACGTAGAATGCTACCTGGTATGTTGGGCCAGTAAAATACTTTTCC
ATCCCATCCTCATCCCATTCCCATGCGATTTCGATGGGAGTACCATCCCG
CCACATCACGGGAACAGATCTGTTTCCCCTGCAGATCGTCACACGGTGCC
CCTTCACGTTACTTGTGATCAATATTCATCCGCCAGGTACAAGAGCAACT
ACGCATCCGAGCACAGGAGGAGTTCGATAACGTAGAGGCTCTTGCTTCAC
CAGAGGGAGGCAAGACCCTCCAGCCGGTTCTTGCTCTGGTACCCATCATC
ACGTGAGCTTTGTACACCTTTCCTACGTCTCCGGGGTGTCGTTGAGAAAT
CGTTGAACTGTTCGTCCCCAGCAGTTTGTAAGCGACCAATTGAGGCTACA
ACAGCGATATGTGTCGACTTGGGCCGTAGATTTTGGACAGGTGGAGGCTC
CGTGCTGCGTTATATGCAAGATCATACCTGCAATTGCCCGGTTCCTCTCC
CCCCAAAACACTGGATGGTAGCTTGCAAACTTGAAGACTACGGAACGGGA
GGTTTTGTAGAACGGTACAAGCAAGAGTTTTTTTTCTGCAGAGTTGACTA
AATACGATTTGCTATCATTCCCCGAGAGGACTTCAAGACGCCGCCATGTG
TGTCTCGATTCGTGGCTCAAGCAGACAAGTGTTGTTTTTTTCGGATGTTG
TTAAGGTTGGTATGGGGTCGTTGTTGTCGTTGCTATTGATGCTCCATGTC
TTGAACCAAAGCAATATTCCAGGCGCGCTTCCTCGCACAGCAGGCTTGAG
CCTCGAAACAATCATTAGGTTTCGCATGGGGCAGTGGTACGTAGGAGGAT
ACAAAGTAGCGGTGTTTTGGCGCACACTTTGTCTACACAGCCATGGCAGT
GTCACTGTCCAACTATACGGTGTTTTTGTGAGGCTGACGCTGTTGCTGCG
AATGCCGGTCGCCCTCTCAACCATCCTGAGAACTAAATTTAAAGTCTCAT
TGTCGCGTGTGCTTCTCTCGTTCCCCGCGCGCTTCAAATGACAAAGGCTT
CGACTGCAACTGGACGAGGTGGAGAGCAATCTCAAAGATCCACGCCTGTT
CGGAGCCGCGTTGACAATTCTGCAAGCTCAAGACTTCCAGAAGAAAGACA
TCAAGCGCGTGTTCAACGCGTACAGCGACAACATCTACTACTTGCCGGAT
TCGGATCGGGAAAACAAGTACCTCCAGGGCGGGGCGACGCCTTCCAGCCG
ACAAACGCTGCAGTATCTCCTCCGAAACGATGTGATCGACAACGTCGAGG
CTCTCACAGCGGAGATATCGTATCTAATCAGAGAGAGGGAGGTCGGGGGC
GAGGCAGACACCGATGAGAAGGACTTGAGGATGTATTTGGGGAAGTGCAA
GCAGAGCTTCGACAAGTACCTGGGCATGGTGCTGCAGAACGAGATCGACG
AGGCAACAGACATGGCAAAGGTGGCCTTGGCCAACAAGAGAAAGGGAAAT
GCGCCCACTCCGGCGAAAACGCTGTAGTAGCAGACCTCCTCGAACTAGAT
TGCTGCCGAGAACGGGGGGAGTTTGTCCGATGCCGCTAGAAACCAGTAGA
ACGGTTTTGATCGTGCTCTTCCTGTCTCGACAGCCTCCCGCCGATCCATC
AGTCGCTATAGAGCGGTGGGATGTAGCTCTGTGTTGTTGATGGGTGTAGC
AGTGTTAGAGTGCATGTTGTCAAGATTTCAGTAGAACTGAAAAAAAAAAG
GCTGCCACTCCAGTGGATAGGTTAGTTCGCGATAGACTTCGTGTGGTGCA
CCTCGTCAATGATCTTGGAAGGTGCGTAACAACAGAGTTGCGTCTCTCAT
GCACTTCAAAAGCTGAAAAGTGTCTACAAGACGTGTTGGAAACCTGTGTT
ATTGTGGAGACGGAAGAACAAGGTACAAACCACAATGCTTAGGTCATTGT
AGACAAGAAGCGAGAAGTCGGGGGTGGTCCAAAAAAACTAGCACGT
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Coding sequence (CDS) from alignment at Scaffold_372:277547..280642+

>EsuBft102_7a-0001 ID=EsuBft102_7a-0001|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=921bp|location=Sequence derived from alignment at Scaffold_372:277547..280642+ (Ectocarpus subulatus male Bft15b)
ATGCCGCTATTATACCAGCCATGGTCGGCAATGCTGCTTTCTAGCTTGCT
CGTGTCCGCCCCTTTCGGTTCCGGAGTCATTGGGTTTAGCACGCCCTCTC
TGTTCCGAGCAAGCTCCTCAGCTGGAGGGCGCACGTACACCAGGCGGAGC
AGATTCTGGAAGCATTGTCCAGCAGGACGAACTACGTCGTCGATACCGAG
TATGTCTTTGCCAGCGGAGGGTGGGCCAACGAGCAGGAATCGGGCAATCG
GACTTGGCGTGGCATCTCTCTTCTCATTGGCCGTGGCCCCAACGCCTGGT
CTTGCGCTTGACCCTGTCCGCAAGGTACAAGAGCAACTACGCATCCGAGC
ACAGGAGGAGTTCGATAACGTAGAGGCTCTTGCTTCACCAGAGGGAGGCA
AGACCCTCCAGCCGGTTCTTGCTCTGGTACCCATCATCACGCTTCGACTG
CAACTGGACGAGGTGGAGAGCAATCTCAAAGATCCACGCCTGTTCGGAGC
CGCGTTGACAATTCTGCAAGCTCAAGACTTCCAGAAGAAAGACATCAAGC
GCGTGTTCAACGCGTACAGCGACAACATCTACTACTTGCCGGATTCGGAT
CGGGAAAACAAGTACCTCCAGGGCGGGGCGACGCCTTCCAGCCGACAAAC
GCTGCAGTATCTCCTCCGAAACGATGTGATCGACAACGTCGAGGCTCTCA
CAGCGGAGATATCGTATCTAATCAGAGAGAGGGAGGTCGGGGGCGAGGCA
GACACCGATGAGAAGGACTTGAGGATGTATTTGGGGAAGTGCAAGCAGAG
CTTCGACAAGTACCTGGGCATGGTGCTGCAGAACGAGATCGACGAGGCAA
CAGACATGGCAAAGGTGGCCTTGGCCAACAAGAGAAAGGGAAATGCGCCC
ACTCCGGCGAAAACGCTGTAG
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