Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LLI5 |
| ProteomeId | EsuBft102_7 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 142 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 2.65e-143 |
| EggNOG OGs | 2E2DA@1|root,2S9M9@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-22_001090.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft102_7a-0001 ID=EsuBft102_7a-0001|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1424bp|location=Sequence derived from alignment at Scaffold_372:277547..280642+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCTCTTTCAACACCACCCACCAACAACAAGACAGATGCCGCTATTATACC
AGCCATGGTCGGCAATGCTGCTTTCTAGCTTGCTCGTGTCCGCCCCTTTC
GGTTCCGGAGTCATTGGGTTTAGCACGCCCTCTCTGTTCCGAGCAAGCTC
CTCAGCTGGAGGGCGCACGTACACCAGGCGGAGCAGATTCTGGAAGCATT
GTCCAGCAGGACGAACTACGTCGTCGATACCGAGTATGTCTTTGCCAGCG
GAGGGTGGGCCAACGAGCAGGAATCGGGCAATCGGACTTGGCGTGGCATC
TCTCTTCTCATTGGCCGTGGCCCCAACGCCTGGTCTTGCGCTTGACCCTG
TCCGCAAGGTACAAGAGCAACTACGCATCCGAGCACAGGAGGAGTTCGAT
AACGTAGAGGCTCTTGCTTCACCAGAGGGAGGCAAGACCCTCCAGCCGGT
TCTTGCTCTGGTACCCATCATCACGCTTCGACTGCAACTGGACGAGGTGG
AGAGCAATCTCAAAGATCCACGCCTGTTCGGAGCCGCGTTGACAATTCTG
CAAGCTCAAGACTTCCAGAAGAAAGACATCAAGCGCGTGTTCAACGCGTA
CAGCGACAACATCTACTACTTGCCGGATTCGGATCGGGAAAACAAGTACC
TCCAGGGCGGGGCGACGCCTTCCAGCCGACAAACGCTGCAGTATCTCCTC
CGAAACGATGTGATCGACAACGTCGAGGCTCTCACAGCGGAGATATCGTA
TCTAATCAGAGAGAGGGAGGTCGGGGGCGAGGCAGACACCGATGAGAAGG
ACTTGAGGATGTATTTGGGGAAGTGCAAGCAGAGCTTCGACAAGTACCTG
GGCATGGTGCTGCAGAACGAGATCGACGAGGCAACAGACATGGCAAAGGT
GGCCTTGGCCAACAAGAGAAAGGGAAATGCGCCCACTCCGGCGAAAACGC
TGTAGTAGCAGACCTCCTCGAACTAGATTGCTGCCGAGAACGGGGGGAGT
TTGTCCGATGCCGCTAGAAACCAGTAGAACGGTTTTGATCGTGCTCTTCC
TGTCTCGACAGCCTCCCGCCGATCCATCAGTCGCTATAGAGCGGTGGGAT
GTAGCTCTGTGTTGTTGATGGGTGTAGCAGTGTTAGAGTGCATGTTGTCA
AGATTTCAGTAGAACTGAAAAAAAAAAGGCTGCCACTCCAGTGGATAGGT
TAGTTCGCGATAGACTTCGTGTGGTGCACCTCGTCAATGATCTTGGAAGG
TGCGTAACAACAGAGTTGCGTCTCTCATGCACTTCAAAAGCTGAAAAGTG
TCTACAAGACGTGTTGGAAACCTGTGTTATTGTGGAGACGGAAGAACAAG
GTACAAACCACAATGCTTAGGTCATTGTAGACAAGAAGCGAGAAGTCGGG
GGTGGTCCAAAAAAACTAGCACGT back to topprotein sequence of EsuBft102_7a-0001 >EsuBft102_7 ID=EsuBft102_7|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=306bp
MPLLYQPWSAMLLSSLLVSAPFGSGVIGFSTPSLFRASSSAGGRTYTRRS
RFWKHCPAGRTTSSIPSMSLPAEGGPTSRNRAIGLGVASLFSLAVAPTPG
LALDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRL
QLDEVESNLKDPRLFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSD
RENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEISYLIREREVGGEA
DTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALANKRKGNAP
TPAKTL back to topmRNA from alignment at Scaffold_372:277547..280642+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft102_7a-0001 ID=EsuBft102_7a-0001|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3096bp|location=Sequence derived from alignment at Scaffold_372:277547..280642+ (Ectocarpus subulatus male Bft15b)
TCTCTTTCAACACCACCCACCAACAACAAGACAGATGCCGCTATTATACC
AGCCATGGTCGGCAATGCTGCTTTCTAGCTTGCTCGTGTCCGCCCCTTTC
GGTTCCGGAGTCATTGGGTTTAGCACGCCCTCTCTGTTCCGAGCAAGCTC
CTCAGCTGGAGGGCGCACGTACACCAGGCGGAGCAGATTCTGGAAGCATT
GTCCAGCAGGACGAACTACGTCGTCGATACCGAGTATGTCTTTGCCAGCG
GAGGGTGGGCCAACGAGCAGGAATCGGGCAATCGGACTTGGCGTGGCATC
TCTCTTCTCATTGGCCGTGGCCCCAACGCCTGGTCTTGCGCTTGACCCTG
TCCGCAAGGTAGAGGTTGGAATCTCAAGAGCAGTACTTGCATACCGTATA
TGACACAAGATAACACACCCCCTGGACCGATTTTCAAAGCCCGATTACTC
CACGACAAAGAGGATGCACAAGCGAAACGATAAATTTTTCAAAAAGCTCT
CGACGAAAAGTTTTCAACGCCGCCGTTTTCGGCGCTGCAACTATTCCTGC
AGTTAAGAAATCGAGCTTCGAAAATTGGTCAAGGGGGTGTGTTATCTTGT
GTCATATACGGTAGTCTAACCCAAACTTGGCCAGCGCTGTACATGCCGTG
GCTGCTCCCCAGGCATGGATCCATGAACGAGTACAATATTTGCACCTAGG
CACAAGCCACATAGCTTGATAAGTAAGCGCTGAGAAGTGGTTCATGCAAC
ATCTTGCCAACAGAACACGAACTGTGGCAACTTTATTGCGGTGCATTCTT
GGAATACAACTGTGTAGAGGTGTACGTGCAGACTGCAGTAGACATAGCAC
TACAGCACATTCCAATCGGCAACGGCGAGCCAGACCGCGGTCATTTGGAG
GAAGTGCAACCTTTCGTGCCTGCACAGGCATCTTCGGATATGAAAACCAT
CGAAAAGCGCCTGCTGTTGGAACCTCCCGCCCTGCCAGAACTTCAAGCCA
TCATGATTGGTCTCTTGTTGTCTCGTCTTTCGACGATAGATTTGAAGTGC
GCGTTTGGGGTGGCAAGTTTCGAGGTGATATCAATGAGCTGGGTAATGGC
GACATACGTAGAATGCTACCTGGTATGTTGGGCCAGTAAAATACTTTTCC
ATCCCATCCTCATCCCATTCCCATGCGATTTCGATGGGAGTACCATCCCG
CCACATCACGGGAACAGATCTGTTTCCCCTGCAGATCGTCACACGGTGCC
CCTTCACGTTACTTGTGATCAATATTCATCCGCCAGGTACAAGAGCAACT
ACGCATCCGAGCACAGGAGGAGTTCGATAACGTAGAGGCTCTTGCTTCAC
CAGAGGGAGGCAAGACCCTCCAGCCGGTTCTTGCTCTGGTACCCATCATC
ACGTGAGCTTTGTACACCTTTCCTACGTCTCCGGGGTGTCGTTGAGAAAT
CGTTGAACTGTTCGTCCCCAGCAGTTTGTAAGCGACCAATTGAGGCTACA
ACAGCGATATGTGTCGACTTGGGCCGTAGATTTTGGACAGGTGGAGGCTC
CGTGCTGCGTTATATGCAAGATCATACCTGCAATTGCCCGGTTCCTCTCC
CCCCAAAACACTGGATGGTAGCTTGCAAACTTGAAGACTACGGAACGGGA
GGTTTTGTAGAACGGTACAAGCAAGAGTTTTTTTTCTGCAGAGTTGACTA
AATACGATTTGCTATCATTCCCCGAGAGGACTTCAAGACGCCGCCATGTG
TGTCTCGATTCGTGGCTCAAGCAGACAAGTGTTGTTTTTTTCGGATGTTG
TTAAGGTTGGTATGGGGTCGTTGTTGTCGTTGCTATTGATGCTCCATGTC
TTGAACCAAAGCAATATTCCAGGCGCGCTTCCTCGCACAGCAGGCTTGAG
CCTCGAAACAATCATTAGGTTTCGCATGGGGCAGTGGTACGTAGGAGGAT
ACAAAGTAGCGGTGTTTTGGCGCACACTTTGTCTACACAGCCATGGCAGT
GTCACTGTCCAACTATACGGTGTTTTTGTGAGGCTGACGCTGTTGCTGCG
AATGCCGGTCGCCCTCTCAACCATCCTGAGAACTAAATTTAAAGTCTCAT
TGTCGCGTGTGCTTCTCTCGTTCCCCGCGCGCTTCAAATGACAAAGGCTT
CGACTGCAACTGGACGAGGTGGAGAGCAATCTCAAAGATCCACGCCTGTT
CGGAGCCGCGTTGACAATTCTGCAAGCTCAAGACTTCCAGAAGAAAGACA
TCAAGCGCGTGTTCAACGCGTACAGCGACAACATCTACTACTTGCCGGAT
TCGGATCGGGAAAACAAGTACCTCCAGGGCGGGGCGACGCCTTCCAGCCG
ACAAACGCTGCAGTATCTCCTCCGAAACGATGTGATCGACAACGTCGAGG
CTCTCACAGCGGAGATATCGTATCTAATCAGAGAGAGGGAGGTCGGGGGC
GAGGCAGACACCGATGAGAAGGACTTGAGGATGTATTTGGGGAAGTGCAA
GCAGAGCTTCGACAAGTACCTGGGCATGGTGCTGCAGAACGAGATCGACG
AGGCAACAGACATGGCAAAGGTGGCCTTGGCCAACAAGAGAAAGGGAAAT
GCGCCCACTCCGGCGAAAACGCTGTAGTAGCAGACCTCCTCGAACTAGAT
TGCTGCCGAGAACGGGGGGAGTTTGTCCGATGCCGCTAGAAACCAGTAGA
ACGGTTTTGATCGTGCTCTTCCTGTCTCGACAGCCTCCCGCCGATCCATC
AGTCGCTATAGAGCGGTGGGATGTAGCTCTGTGTTGTTGATGGGTGTAGC
AGTGTTAGAGTGCATGTTGTCAAGATTTCAGTAGAACTGAAAAAAAAAAG
GCTGCCACTCCAGTGGATAGGTTAGTTCGCGATAGACTTCGTGTGGTGCA
CCTCGTCAATGATCTTGGAAGGTGCGTAACAACAGAGTTGCGTCTCTCAT
GCACTTCAAAAGCTGAAAAGTGTCTACAAGACGTGTTGGAAACCTGTGTT
ATTGTGGAGACGGAAGAACAAGGTACAAACCACAATGCTTAGGTCATTGT
AGACAAGAAGCGAGAAGTCGGGGGTGGTCCAAAAAAACTAGCACGT back to topCoding sequence (CDS) from alignment at Scaffold_372:277547..280642+ >EsuBft102_7a-0001 ID=EsuBft102_7a-0001|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=921bp|location=Sequence derived from alignment at Scaffold_372:277547..280642+ (Ectocarpus subulatus male Bft15b)
ATGCCGCTATTATACCAGCCATGGTCGGCAATGCTGCTTTCTAGCTTGCT
CGTGTCCGCCCCTTTCGGTTCCGGAGTCATTGGGTTTAGCACGCCCTCTC
TGTTCCGAGCAAGCTCCTCAGCTGGAGGGCGCACGTACACCAGGCGGAGC
AGATTCTGGAAGCATTGTCCAGCAGGACGAACTACGTCGTCGATACCGAG
TATGTCTTTGCCAGCGGAGGGTGGGCCAACGAGCAGGAATCGGGCAATCG
GACTTGGCGTGGCATCTCTCTTCTCATTGGCCGTGGCCCCAACGCCTGGT
CTTGCGCTTGACCCTGTCCGCAAGGTACAAGAGCAACTACGCATCCGAGC
ACAGGAGGAGTTCGATAACGTAGAGGCTCTTGCTTCACCAGAGGGAGGCA
AGACCCTCCAGCCGGTTCTTGCTCTGGTACCCATCATCACGCTTCGACTG
CAACTGGACGAGGTGGAGAGCAATCTCAAAGATCCACGCCTGTTCGGAGC
CGCGTTGACAATTCTGCAAGCTCAAGACTTCCAGAAGAAAGACATCAAGC
GCGTGTTCAACGCGTACAGCGACAACATCTACTACTTGCCGGATTCGGAT
CGGGAAAACAAGTACCTCCAGGGCGGGGCGACGCCTTCCAGCCGACAAAC
GCTGCAGTATCTCCTCCGAAACGATGTGATCGACAACGTCGAGGCTCTCA
CAGCGGAGATATCGTATCTAATCAGAGAGAGGGAGGTCGGGGGCGAGGCA
GACACCGATGAGAAGGACTTGAGGATGTATTTGGGGAAGTGCAAGCAGAG
CTTCGACAAGTACCTGGGCATGGTGCTGCAGAACGAGATCGACGAGGCAA
CAGACATGGCAAAGGTGGCCTTGGCCAACAAGAGAAAGGGAAATGCGCCC
ACTCCGGCGAAAACGCTGTAG back to top
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