EsuBft102_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft102_5a-0001
Unique NameEsuBft102_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:289101..294427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLI7
ProteomeIdEsuBft102_5
Protein domainsCoil
Protein domainsSSF57850
Protein domainsIPR013083
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length89
Evalue1.05e-181
EggNOG OGs28HE3@1|root,2RTIT@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRing finger
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft102_5aEsuBft102_5aEctocarpus subulatus male Bft15bgeneScaffold_372 289101..294427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_5a-0001EsuBft102_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 289130..294427 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_5a-0001-exonagat-exon-4528Ectocarpus subulatus male Bft15bexonScaffold_372 289101..289178 +
EsuBft102_5a-0001-exonagat-exon-4532Ectocarpus subulatus male Bft15bexonScaffold_372 290179..290359 +
EsuBft102_5a-0001-exonagat-exon-4531Ectocarpus subulatus male Bft15bexonScaffold_372 290607..290741 +
EsuBft102_5a-0001-exonagat-exon-4529Ectocarpus subulatus male Bft15bexonScaffold_372 291594..291717 +
EsuBft102_5a-0001-exonEsuBft102_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 293160..293366 +
EsuBft102_5a-0001-exonagat-exon-4530Ectocarpus subulatus male Bft15bexonScaffold_372 294263..294427 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_5a-0001-exonagat-five_prime_utr-179Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 289101..289129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_5a-0001-cdsEsuBft102_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 289130..289178 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft102_5a-0001 ID=EsuBft102_5a-0001|Name=EsuBft102_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=890bp|location=Sequence derived from alignment at Scaffold_372:289101..294427+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGCAGTGTCGGTGTGCGACTTGTGCAACATGCGGAGGGCAGACTTGAAA
GGTCCCTGCGGACACAAGTACCACGCACGTTGCATCTACGCGATGCCGAT
CACCCGGTGCCCGGTGTGTGACCAAGCGTTCCCGAACACTAACGATGGGG
GGCTGCTCATCCTCCCGGTGGAGCCCTTCTCAAACGCCGGCGGCGCTACG
GGGGAAAGCGAAGACGACTCGCGCACGGGCGCGCGTGACGGCGCCGAGAC
GCAAACAAGGACGGGGCGATGGCACTCGTTTGAGACCATGTACGCCCAGC
GGATAGTGGCGGATTTCGATGCGGGCACGTTGCCGCTTTGCGAGGGGACC
AAGCTGGGGAACTTGCTATGCAGCATCCTCAACTGCTCGCCATCGCGTTT
GTCCAAGAAGCTCAAGATCGGTAAGAAGTGCTTCCAGCAACGTCAGGGTC
GTCCAATGACCCCGGAGCACATTGCAAGGCACCGGGAGGCGCAGAAACGG
CTGAGTGATCTCGAGGAGATGTTCTTGATGGCGGAGAGCAGGGCCAACCG
CGGCATGGCAAACGCCGAGACCCTGAGCGAGTGCATTCAGAAGGAGTGGA
GGGAACGGCTGGTTGAACACGCGCTGGCCGTCAACCAGCGTCTCAAGAAC
GCGTGGGACTGGAACTCCAGTCGAAAGCGAGCGGAGCGTAAGCGGGCGGA
GCTATCGACGAACGCTCTGAACAAGCTTCTATCAACCATAAGTCCGAACC
AGTCCTCGGACTCTACTGTCAACCACCTGGCGCCCCTCTTCTTCACGAAC
CACAACGCGAACGGCGGGGGTGCCGCGGGGAGCGGGGCGGGAGCGGCGGG
AGCGGCGGCGGGGGCTGGGGCGGCCGCCGGGGGGGGNNNN
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protein sequence of EsuBft102_5a-0001

>EsuBft102_5 ID=EsuBft102_5|Name=EsuBft102_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=287bp
MRRADLKGPCGHKYHARCIYAMPITRCPVCDQAFPNTNDGGLLILPVEPF
SNAGGATGESEDDSRTGARDGAETQTRTGRWHSFETMYAQRIVADFDAGT
LPLCEGTKLGNLLCSILNCSPSRLSKKLKIGKKCFQQRQGRPMTPEHIAR
HREAQKRLSDLEEMFLMAESRANRGMANAETLSECIQKEWRERLVEHALA
VNQRLKNAWDWNSSRKRAERKRAELSTNALNKLLSTISPNQSSDSTVNHL
APLFFTNHNANGGGAAGSGAGAAGAAAGAGAAAGGGX
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mRNA from alignment at Scaffold_372:289101..294427+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft102_5a-0001 ID=EsuBft102_5a-0001|Name=EsuBft102_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5327bp|location=Sequence derived from alignment at Scaffold_372:289101..294427+ (Ectocarpus subulatus male Bft15b)
TTGCAGTGTCGGTGTGCGACTTGTGCAACATGCGGAGGGCAGACTTGAAA
GGTCCCTGCGGACACAAGTACCACGCACGTGAGTTTTGTAGGCCCACGTC
GCTGGACTCCCGACCCAGATTTCTTTCAAGTGTTCCTGGTTGCGGGGTGG
TGTGAGCGTCATGAGTTTGGTGATTACTTTGGTGTGCGAAATTTTCGCGT
TTTGCCCACGGACCCACGGAATCAAGAGAGAGTGACGTTGTGCCATCCCA
CTGATAGCCGCCGCCCGCCGATGTGCTGGGAGAGCCAGCAGCCCAGGGAG
TGGTGGCGGCGGCTGCTGCTGTTGTCGTTTTTCGTCGTTTCATCGCCATT
CCGGATGAACCTTGCCGATGCATGCAGCGAGTGGAGTTCTGAAGAGAACG
TAGGCGTGTCTGTATCCGAAATTTCTTGTTATGCGTGCTATGCTAGTACG
GCGCGAGAGCCAACGACACACCGTCTCGCAAGGGAAACTTGGGGTTGTAC
ACATGTTTCGGAAAACGTTGCAAGTAGTGTGGTTTGGTTTTTCTTTTGAT
TTCTGTCATGTCGGGTGATATTTGTGGAGCCCAGGTCAAACCTACCTATG
GTGACCCGGAGGCTTGGTCGGCGTTGAGAATAAGCCACGCTTCCCCGGCT
TTGTAAGGATGAGAGGATAAGATAACTTCGAGTATATGTATCTCTGTCTT
GGGAGAAAAAAAAACACAAGGAAATCAAGTTTACCCACCGCGTTGTTTTA
ACGCTTAACGCTTTCCAACGGCTCCTCCTGGGAACGTTGGGGGATCAAAT
CAAGTAAACACTGCGCCGTGTATCATCTCCACGATAATAATAACTGAGAA
GAGAGTACAAAAAATCGATCACATCACAATAGGTTGGATCAAGTCAATAC
ATGCTTGCTGTGCACCATCTCGGCGTACAACTGATAGAGAAAAAATAAAG
AAAAAAAACGGTACATCACAACAGGTTGCATCAAGTCAAAGAACACGGCG
CTTATTTTGCCATCTCCCCATTACACCAAGATGACTGAGAAAAGAAGACC
CACGACCGAAAATGAAATCGATCAATAGGTTGCATCTACGCGATGCCGAT
CACCCGGTGCCCGGTGTGTGACCAAGCGTTCCCGAACACTAACGATGGGG
GGCTGCTCATCCTCCCGGTGGAGCCCTTCTCAAACGCCGGCGGCGCTACG
GGGGAAAGCGAAGACGACTCGCGCACGGGCGCGCGTGACGGCGCCGAGAC
GCAAACAAGGTGTCTACCATGCTGCTGCTGCAAAAGGTCGCGCTAGCGCG
ATGTAGCACGCACGACGTGCAATTAAATGCTGTTGTGGTTGCCGCTAGAA
ATAATGTATCTAGTTTTTGACGTGTCACTCACACAAGCTTGATTGAGGCA
ACGGTTAGTGTGCATGTTTTGGTTGCTGCTGATTGGCGAGTGCTAACGAC
TCGGGGGCGACCCTCCCCCTCCCCCCCCGTGATTGATCTTGCGTTGCCTC
CGGCAGGACGGGGCGATGGCACTCGTTTGAGACCATGTACGCCCAGCGGA
TAGTGGCGGATTTCGATGCGGGCACGTTGCCGCTTTGCGAGGGGACCAAG
CTGGGGAACTTGCTATGCAGCATCCTCAACTGCTCGCCATCGTGAGTGTC
GTCATTGTTGTTTCTGACGACGTCGTTTGTTGGTGGCGGTCGTGGTCGTT
GTGATAGCACGTGTTTCGTGTCCAGAAAATTGTTGATGTTTGACGGGTCG
CTGGCTACAAACGCGAAGGTTTTACTCGCAGGATAGCTGTTTTTTTTTTT
TTTCGCTTCTCATATACTGCATGGTTTCCTGTGTGCGCTTTCGCTCTTGT
TTTTTAATCCCGCTGTTAGGCTGAGGTCTTATTGTTGGTCAACAGGGTAT
TGTGTGTGCATGTCTTCCTTGTTAGCATGGCCCGCGCTATCCGGCTGACC
ATAGAGGTCAGCCTTGTACCGGAATAAAAAAACGAACACTTTCTTATCAA
AGCATAAGGGGGGCCCCGCCGACTGGGTGGGCGTGGGGTACAGGTGTGTG
TGCATATGTGTGTGTGTGTGTTTTTTATTATTATTGCCATCGACCGCGCT
AACCGGCTTACCAATGAAAAGACGTCAGTCTCGGTGCGGTTGAGGGCACA
TAACACTTCTAAATGCCATTACCCGGGACCCCGTGATGGAGCGGTGTGGG
AGAGGCTAAGCTATCCTCTGGATCAAAGACTGTTTGTGTCTTGTTCTCAG
CATCGACCGCGTTAGCAGACTGGTCTATGAAACGACGTCAGCCTTTTCAC
GAGATGATAGATGTGAAGTATGTGTGTGTGTTCCTGTACTGTATCCCTTG
TCCCTTTTCGTTCTTTTTGTTGTTCCTCTTGAGGGCTCTTTTGCTTTTGC
CTTTGCATGTCTAATTTTGTGTTCTCTTCTTGAACCCACACGCCCGGACG
CTCCCGTCCCGTCCCACATCCCATTCCGTTCCATTCCGTGCAGGCGTTTG
TCCAAGAAGCTCAAGATCGGTAAGAAGTGCTTCCAGCAACGTCAGGGTCG
TCCAATGACCCCGGAGCACATTGCAAGGCACCGGGAGGCGCAGAAACGGC
TGAGTGATCTCGAGGAGGTGTGTTGTTGCTGTTGTGGTTGCTGCTGCTGC
TGTCTTGACTCTCTTGTTTTGTTAGCTTGCAGCCAATACGTGACCACGCC
AAACACGAGCATTTTACGTGCGGTGCGTTTGTCTGCTTGCATTTTTTGTT
CTTAGCGTCGACCGCGCTAACTGACGGGCGAACGACGAGACATCAGTCTT
AGTGCGGCGCGTGTGTGTATATATATATATATATTCATTATGTTGTTTTC
TCTTTCGTTTTATTTTCTTGTAGTTGATTAGTTCATTTGCGCGAAAGGTA
CCGCAGTGGTTCGTATGATCGCACCCCCGTGTTATTTAGCGTTTTTCTAA
AGCGTATTTCTCCGCAACCAGGGAGGTATCACCTCCGAACAAGGTGGTTT
GGGAAACATGTCTTCGAGGGCTTTCCGGTGAGGTATCAGTTGGTGTTCGC
GCCCTCCGGGTAGTGGAGAAATACGCTGTACAAGAACGCCAACACGCACA
ATTGCGGTATGTCGCCATGATGACGGTTTAGCGACCAAGACGAACGCTCG
TGGCTGTTGTCGATATCGTCACGTGCTGTAGAACTTGGGCATGCAGACGT
CGAGACGCTATTAACGTTTCCAGCTACAACACCTAAATACAATAGGTGGC
ATCTCCCCATGTGCGAGATGGAAAGAGGCTGTTGTTGTCTAGAGTACGCA
AACATACTGGATGAAGTATAGGATCAGCTAGGTTAGGATTAGGGTTTGGG
GTCTGCGTGCCCCCTGCTTGGCATTTTTTCGTGAATAATGCTCTTTTCGT
AGGCAGTCCGTTGTCCAGCCAACAGAGACAAGAATAACACGAGCCTCAAG
GCACTCGTAAGTCGCAAGGGTTGTCAGCGGTCGCGCTTTTGCAAGCACCA
CGAGTTTGATTTTTGTGTACGCATACGTCTGGCTTCACAGCGTAAGCGTT
CTTTTGCGGGGATTGCAAGGGTCAATCGGGGTCCGTCCGCACGCAAGGAG
CATGCTACGACCACCGGGGGTCGAATGGCCCAAAGTCATGCGACAACCGA
ACCTCCCGTTTGCCCCCTCCCCACAAACGCAAGGATAAATGACCAGCTTC
CTTTTGAGCCGTAGCCTGGGCCGGCAAGAAACGGCATATCGCTCCGTTCT
AGCATTGTTAGTGTGAGGCCAAAGGTCCAATGACTACGGCATGCGTTTAC
ATGAGAGTACCCCCCCTCCCCTTGCGGGAACAATGCTCCGTCCTCTCGAG
CAAGCGTGGTCAATGGTCTAGCGACCATGCACGGCTTGGAGTACACCCCC
CACCTACCCCATTGTGAGGACAATGCGCCGTCCTCTCGAGGACGCATAAA
TAGTGAACGGTCTGACCGCTAAGTTATGCAACACATGGTCGACCGCTAAG
ACATGCAAAACATCAGAGAACACCCCCCCACACCCCCCTCCTCGCTCCAC
GGTCGTCAGATGTTCTTGATGGCGGAGAGCAGGGCCAACCGCGGCATGGC
AAACGCCGAGACCCTGAGCGAGTGCATTCAGAAGGAGTGGAGGGAACGGC
TGGTTGAACACGCGCTGGCCGTCAACCAGCGTCTCAAGAACGCGTGGGAC
TGGAACTCCAGTCGAAAGCGAGCGGAGCGTAAGCGGGCGGAGCTATCGAC
GAACGCTCTGAACAAGGTTTGTTTCATTTTGTTTTGTTTTTCGCCGGATA
TCTCACCGCTGCGAGGGCTCCTAATGTTTTTGTCGTTTTTCTGTTTTGTT
TTACCTCAGGTGCGTGGTGCGCTTGTGGGGGTAGTTGTCCTGTGGCAACG
GAAGGCACTGGAGTCGGTTGGACCAATACCGGCATAACTTACTCAACAGT
AAGCGGGATGATTTTATATATGTGAAGACAGCCAAAACAACTTACTGAAC
AGTAAGCGGGATGATTTGATACATATGAAGACAGCCAAAACAACTTACTG
AACAGTAAGCGGGATGATTTTATATATGTGAAGACAGCCAAAACAACTTA
CTGAACAGTAAGCGGGATGATTCGATACATGTGAAGACAGCCAAAACAAC
AATTCATCCCACTGGATGCCATAGCTGCGAATTTTTTTCTATCCTTGGTG
GATGTTCGTGGATTCGAGTACTGTTTAACACGCGTCGTCAATCGTCGGAG
ATATCATGCCCCCGTTTGCATGAAGTGCATTGATGTTGGTGCGCAGCCGA
GGTGTGTACGCAGAAACGGTTCTCACGCGGGACCTGAAACCTGCCCTCAT
CTTGTCCTCGGCTACAGTTTTTTTTTTTTTTTCGATGTCGTCCCTTTTTG
ATGTTTTTTGTCCCACGGGTGTAGGTTTCCCTTTGACAAACTGCTGCTGT
AGATTGATGCAAGAGGCAACAGCCCTTTAGGATATTCGCAATTTCAAAGA
AAAATAAGAACCCTTTCGGGACGTAACCGCAGTAGTCGAACGGGACGTAT
TTAAGTCTTGACAGTGAGTGGCGGAACCGCAACTCCCGCTGCTATTGCTG
CTGCTGACGGCCCCGCTGTTCCGTAAACCGCTCCGCTGCCATTTTCCCTC
CCTACGATCCAGCTTCTATCAACCATAAGTCCGAACCAGTCCTCGGACTC
TACTGTCAACCACCTGGCGCCCCTCTTCTTCACGAACCACAACGCGAACG
GCGGGGGTGCCGCGGGGAGCGGGGCGGGAGCGGCGGGAGCGGCGGCGGGG
GCTGGGGCGGCCGCCGGGGGGGGNNNN
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Coding sequence (CDS) from alignment at Scaffold_372:289101..294427+

>EsuBft102_5a-0001 ID=EsuBft102_5a-0001|Name=EsuBft102_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=861bp|location=Sequence derived from alignment at Scaffold_372:289101..294427+ (Ectocarpus subulatus male Bft15b)
ATGCGGAGGGCAGACTTGAAAGGTCCCTGCGGACACAAGTACCACGCACG
TTGCATCTACGCGATGCCGATCACCCGGTGCCCGGTGTGTGACCAAGCGT
TCCCGAACACTAACGATGGGGGGCTGCTCATCCTCCCGGTGGAGCCCTTC
TCAAACGCCGGCGGCGCTACGGGGGAAAGCGAAGACGACTCGCGCACGGG
CGCGCGTGACGGCGCCGAGACGCAAACAAGGACGGGGCGATGGCACTCGT
TTGAGACCATGTACGCCCAGCGGATAGTGGCGGATTTCGATGCGGGCACG
TTGCCGCTTTGCGAGGGGACCAAGCTGGGGAACTTGCTATGCAGCATCCT
CAACTGCTCGCCATCGCGTTTGTCCAAGAAGCTCAAGATCGGTAAGAAGT
GCTTCCAGCAACGTCAGGGTCGTCCAATGACCCCGGAGCACATTGCAAGG
CACCGGGAGGCGCAGAAACGGCTGAGTGATCTCGAGGAGATGTTCTTGAT
GGCGGAGAGCAGGGCCAACCGCGGCATGGCAAACGCCGAGACCCTGAGCG
AGTGCATTCAGAAGGAGTGGAGGGAACGGCTGGTTGAACACGCGCTGGCC
GTCAACCAGCGTCTCAAGAACGCGTGGGACTGGAACTCCAGTCGAAAGCG
AGCGGAGCGTAAGCGGGCGGAGCTATCGACGAACGCTCTGAACAAGCTTC
TATCAACCATAAGTCCGAACCAGTCCTCGGACTCTACTGTCAACCACCTG
GCGCCCCTCTTCTTCACGAACCACAACGCGAACGGCGGGGGTGCCGCGGG
GAGCGGGGCGGGAGCGGCGGGAGCGGCGGCGGGGGCTGGGGCGGCCGCCG
GGGGGGGNNNN
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