EsuBft102_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft102_2a-0001
Unique NameEsuBft102_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:341546..342650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LN28
ProteomeIdEsuBft102_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length110
Hectar predicted targeting categoryother localisation
Evalue2.65e-12
EggNOG OGs2CZS4@1|root,2SBGG@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft102_2aEsuBft102_2aEctocarpus subulatus male Bft15bgeneScaffold_372 341546..342650 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_2a-0001-exonEsuBft102_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 341546..342650 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_2a-0001-exonagat-three_prime_utr-292Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 341546..341990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_2a-0001-cdsEsuBft102_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 341991..342650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_2a-0001EsuBft102_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 341991..342650 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft102_2a-0001 ID=EsuBft102_2a-0001|Name=EsuBft102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1105bp|location=Sequence derived from alignment at Scaffold_372:341546..342650- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCGTTGACACCGGAGCGGAACAAAGCATCCTTCAGCGGGGCGGG
GCTGTGGCCTGTGGACATGGATCGAGCGCTGACCCGGCTTCAGGGCACGG
CGAAGAGGAAAGAGGGGCCGACCGGGCGCCCACCCCTAGAGGATGTCCCC
ATCGCCATGATCCACGAGCAGCTGGAAGAGGCCATCGGAGAGAGGGGCCT
GAGGCAATTGAAGGCGGGAGGACATACCATTACCGGACTCAAGGTAGGCA
CGGTGATGCTCGGCGGTCTCCTGACTCAGAGGAAGCGCGCCAAGAAACTG
GCGACCTCGCGGGGCTCTTTGGGCCTTCCCGACGGAGGCAACATCAACTC
GGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAGGTAG
AGGCCGAGGCGAAAGCGGAGAGGGAAAGGGGGCGCGCAAGGAAGAGGAAA
GAGGCGGCCGCGGCGGCGGCGGCGCGGGCACGACAGGCGAATACGGGGGG
TCGAAGACGGCGAGGGGGCCGGGAGCGCAGCTGGAAGAGGGGCCTCACCT
GGCCGTGGTCAAGGAGCGGCTGCAGCACAAGGGGCGGCTTTGCCCGTTCA
CCAGCCGGCACCCTCCTTGTCCCTGGTTGGACGGCAGCGGACGCCGACAC
CCGTTGTTGACGTGTAGCCGCCTATGAGACTCTCCGCGGTTTGTTTTCTA
CCACACTCAGAGTAGGACAAAACAAGATACAAAAGTCGTCAGTTTTTACG
TGGAGTCGATACATACCCTGTTGCACGTTGCTTGTTGATAGTAGCGTAGG
CAACGGTGGCGTTACAGCATGCCAATGGGGCGGGGGGGGGCGGCGGGGGC
GTTTGACCGAAAACCAGGGATGTCGTGATTCTGTCCCCGGGTGACCTCCA
TTTCTTTTTTTTGCGATAAATGTTTCTCATGCATGTCTGAATGCTACCTC
CAAATTGTATGTCGTGGCGATGTATGAACAGTCCAGAATAGACTATGCAG
GGTTCGTGGTGTACGGGGCTGATTCTTGCCGTAGCGGCACGCAAAGTACC
GAAAATATACCCATTTTTGAACAACTATTTCTTGACCGTACCAACTCCTT
TCGGT
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protein sequence of EsuBft102_2a-0001

>EsuBft102_2 ID=EsuBft102_2|Name=EsuBft102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=219bp
MSSLTPERNKASFSGAGLWPVDMDRALTRLQGTAKRKEGPTGRPPLEDVP
IAMIHEQLEEAIGERGLRQLKAGGHTITGLKVGTVMLGGLLTQRKRAKKL
ATSRGSLGLPDGGNINSEEFLAKVDAKERADKVEAEAKAERERGRARKRK
EAAAAAAARARQANTGGRRRRGGRERSWKRGLTWPWSRSGCSTRGGFARS
PAGTLLVPGWTAADADTRC
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mRNA from alignment at Scaffold_372:341546..342650-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft102_2a-0001 ID=EsuBft102_2a-0001|Name=EsuBft102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1105bp|location=Sequence derived from alignment at Scaffold_372:341546..342650- (Ectocarpus subulatus male Bft15b)
ATGTCTTCGTTGACACCGGAGCGGAACAAAGCATCCTTCAGCGGGGCGGG
GCTGTGGCCTGTGGACATGGATCGAGCGCTGACCCGGCTTCAGGGCACGG
CGAAGAGGAAAGAGGGGCCGACCGGGCGCCCACCCCTAGAGGATGTCCCC
ATCGCCATGATCCACGAGCAGCTGGAAGAGGCCATCGGAGAGAGGGGCCT
GAGGCAATTGAAGGCGGGAGGACATACCATTACCGGACTCAAGGTAGGCA
CGGTGATGCTCGGCGGTCTCCTGACTCAGAGGAAGCGCGCCAAGAAACTG
GCGACCTCGCGGGGCTCTTTGGGCCTTCCCGACGGAGGCAACATCAACTC
GGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAGGTAG
AGGCCGAGGCGAAAGCGGAGAGGGAAAGGGGGCGCGCAAGGAAGAGGAAA
GAGGCGGCCGCGGCGGCGGCGGCGCGGGCACGACAGGCGAATACGGGGGG
TCGAAGACGGCGAGGGGGCCGGGAGCGCAGCTGGAAGAGGGGCCTCACCT
GGCCGTGGTCAAGGAGCGGCTGCAGCACAAGGGGCGGCTTTGCCCGTTCA
CCAGCCGGCACCCTCCTTGTCCCTGGTTGGACGGCAGCGGACGCCGACAC
CCGTTGTTGACGTGTAGCCGCCTATGAGACTCTCCGCGGTTTGTTTTCTA
CCACACTCAGAGTAGGACAAAACAAGATACAAAAGTCGTCAGTTTTTACG
TGGAGTCGATACATACCCTGTTGCACGTTGCTTGTTGATAGTAGCGTAGG
CAACGGTGGCGTTACAGCATGCCAATGGGGCGGGGGGGGGCGGCGGGGGC
GTTTGACCGAAAACCAGGGATGTCGTGATTCTGTCCCCGGGTGACCTCCA
TTTCTTTTTTTTGCGATAAATGTTTCTCATGCATGTCTGAATGCTACCTC
CAAATTGTATGTCGTGGCGATGTATGAACAGTCCAGAATAGACTATGCAG
GGTTCGTGGTGTACGGGGCTGATTCTTGCCGTAGCGGCACGCAAAGTACC
GAAAATATACCCATTTTTGAACAACTATTTCTTGACCGTACCAACTCCTT
TCGGT
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Coding sequence (CDS) from alignment at Scaffold_372:341546..342650-

>EsuBft102_2a-0001 ID=EsuBft102_2a-0001|Name=EsuBft102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=660bp|location=Sequence derived from alignment at Scaffold_372:341546..342650- (Ectocarpus subulatus male Bft15b)
ATGTCTTCGTTGACACCGGAGCGGAACAAAGCATCCTTCAGCGGGGCGGG
GCTGTGGCCTGTGGACATGGATCGAGCGCTGACCCGGCTTCAGGGCACGG
CGAAGAGGAAAGAGGGGCCGACCGGGCGCCCACCCCTAGAGGATGTCCCC
ATCGCCATGATCCACGAGCAGCTGGAAGAGGCCATCGGAGAGAGGGGCCT
GAGGCAATTGAAGGCGGGAGGACATACCATTACCGGACTCAAGGTAGGCA
CGGTGATGCTCGGCGGTCTCCTGACTCAGAGGAAGCGCGCCAAGAAACTG
GCGACCTCGCGGGGCTCTTTGGGCCTTCCCGACGGAGGCAACATCAACTC
GGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAGGTAG
AGGCCGAGGCGAAAGCGGAGAGGGAAAGGGGGCGCGCAAGGAAGAGGAAA
GAGGCGGCCGCGGCGGCGGCGGCGCGGGCACGACAGGCGAATACGGGGGG
TCGAAGACGGCGAGGGGGCCGGGAGCGCAGCTGGAAGAGGGGCCTCACCT
GGCCGTGGTCAAGGAGCGGCTGCAGCACAAGGGGCGGCTTTGCCCGTTCA
CCAGCCGGCACCCTCCTTGTCCCTGGTTGGACGGCAGCGGACGCCGACAC
CCGTTGTTGA
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