EsuBft102_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft102_22a-0001
Unique NameEsuBft102_22a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:55865..60345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G5K3
ProteomeIdEsuBft102_22
Protein domainsSSF158997
Protein domainsIPR005651
Protein domainsPTHR12773
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Notemultifunctional methyltransferase subunit trm112-like protein at1g78190 os:arabidopsis thaliana [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length2004
Hectar predicted targeting categoryother localisation
Evalue3.06e-86
EggNOG OGsKOG1088@1|root,KOG1088@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family UPF0434/Trm112
Ec32 orthologEc-22_000960.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameTRMT112
KEGG koko:K15448
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0018364,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030488,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0036265,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046982,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:2000232,GO:2000234
Descriptionpeptidyl-glutamine methylation
COG categoryS
BRITEko00000,ko03012,ko03016
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0051726
GO0042274
GO0042273
GO0034708
GO0070062
GO0008757
GO0005515
GO0001510
GO0006364
GO0018364
GO0005829
GO0035265
GO0008276
GO0008173
EC2.1.1
GO0042127
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft102_22aEsuBft102_22aEctocarpus subulatus male Bft15bgeneScaffold_372 55865..60345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_22a-0001EsuBft102_22Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 57327..60181 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_22a-0001-exonagat-exon-4632Ectocarpus subulatus male Bft15bexonScaffold_372 55865..57351 -
EsuBft102_22a-0001-exonagat-exon-4631Ectocarpus subulatus male Bft15bexonScaffold_372 58045..58220 -
EsuBft102_22a-0001-exonEsuBft102_22a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 59514..59600 -
EsuBft102_22a-0001-exonagat-exon-4633Ectocarpus subulatus male Bft15bexonScaffold_372 60092..60345 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_22a-0001-exonagat-three_prime_utr-291Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 55865..57326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_22a-0001-cdsEsuBft102_22a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 57327..57351 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_22a-0001-exonagat-five_prime_utr-176Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 60182..60345 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft102_22a-0001 ID=EsuBft102_22a-0001|Name=EsuBft102_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2004bp|location=Sequence derived from alignment at Scaffold_372:55865..60345- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAACAGCTACGGAGTACAGAGGCTTAACCCGCCTGGGACACACCAACTGA
TTACACATACACACACCCGCGTGCCGGCGCGTGTCGTTTAGACCCGACGA
AAACCGAAAGGAGGGTTACAGGCTGCTGTCAATCGGCCATCGCCTGCCAC
CGCTGGGCTTCGCTATGCGCCTGCTCACTCATAATGTTCTCCGATCCCCG
ATGAAGGGAGTGGTGGAGGGCTACCCCCTACGCATCGAGGCGACCGACGT
ACAGATGGTGGAATCAGAGGTCAAAAAAGAGTTCGTCAAGCACATGGCGA
CCACTTTGGACTGGGGGGCGCTCTGCAAAGCGGCAGCCGAGATTGGCATG
CCCGAGGGGTCTCTCCCACCAGCGTTAACGCCGGAGCTTCTGGAAGACTC
TTCCTTCTTGGAGGCTTTGCATCGCGTCTTGATGGACATGCACGTCGTGG
AGGGCACTCTCGTCTGTCCCGAGACCGGACGCAGGTTTCCCATCGCTGAA
GGTGTTCCGAATCTCATGTGCACCGAGGACGAGGTGCGATGACGTACCGT
ACCGGCGCGAGAACCTCAGCCTCGTCCGAATTTCTCGGGCGCCTGAGCGG
GGGGGTGTGTGTACTCATAGCCGTCTATGCCGTTCTCGTGAGACCATTGA
CCTTCCTATCCATACAAAACCGGAACGGAGTACGTCGGGTTTTCACCCGA
TCAGGCTATCACACCACCAAGTGCGAATCGCTCGCCCGGCGAGTCGCATG
GAGCGTGCGCTGGGAGCGGGGGGGTGATGGCGATTTTTGGAGCTTCCAGC
CCGACTTTCTGGACCACGAACAGGGCGGAATGGTTGAGCGACCAGGGCAA
CCCTACAGAAGATGCGTCGCCATGGTGCTGCTGGTAGTGATATTGCCTAC
CGCCACGTGGTGGCTTGTCGTTTGTGGATTGGGGAGTTTTTGTATGATCG
CCCCCGGCGCTGCACCTCTCCTCCCGTGCCTCTGGCCCCCCTGTCCTTGG
CGGTGAGCGGTGCACAACCAACGACTGACGTGAAACTCCCACTTGGGCGC
GCGTCCTTATACCCGGTTTAATCGGAGGAGGGGGGAGGGAAAAAAGTTTT
TGCCGTGGGGGGGACAGCTCAAACAACGGGCAGAGCGTACCCTAACCGCC
GCCACCCTCAGCCGCCTCTCCCTGTTCGACTTTCTTCAGCTGCTGGGCCA
CAGCTACAGTCAGTCGGGAGCATGTCTGCCAGCTCGTAATCTCTGTATGG
CCGAAGAGCAGTCAATCGCGTTGTTGCCCGCTTTTTGGTTGAGACACCTG
GTTGTAGTTGTATGTGGCTTCGGAGGGAAATAGTGTTCTTTCCGGTGTCT
ACCACGGTGCGGTGATTCGAGGCACCGCGCCTCACATGGTTGCAGCAACA
CTGACGACGATACCGTACTGGTGGCTCTACTGTAGTACCCCAAGACCAGG
AGAGAAACAAATGTAACATAGGCAGGGACCACCAGGGGGGCCGTGACTTG
GACTTTGTTTTTTGGTGGTGGTGGTGGTGGGGGGGGGGATTTCATTCNGT
GTATCTTTTTCTCTTTGGAAGGTATACACCAAACGAGCGCCCTACCCTGC
CATGTATCTAAGCGCAACCTGATTGACCGGTGGTCTGTCTTCAACGGGAT
GGTACACATGGCCTCAACCACCACAGGACTGCCGCTTTGTGTGGTTTGAC
ATTGATGTGCATGGAAAATAGTTTTTTACCATGACCGTTCTTTCGTACGT
TTTTCTTCCCGTGTTTCTGGGCGCCTAGGACAAGTTTTCGTCGCGCCTTC
GTCGTTGCTCCCTGAGCATCTGCGCACCAACACGCAAACACGCAGCGCGC
ACGTACACAGTGACGCTGAGATTTGCTGCCGACGTGTCAACAGTCTTGTA
AGACGGGCGATGGGATCGCTACTCAGGCCGCTGGGCGTCGGCTTTAAATA
TTGTGTTTGTTTTTTTTGTCTTAGCTTTCGGTGTGTGTCATTTGGGGGGG
GGGG
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protein sequence of EsuBft102_22a-0001

>EsuBft102_22 ID=EsuBft102_22|Name=EsuBft102_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=125bp
MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKKEFVKHMATTLDW
GALCKAAAEIGMPEGSLPPALTPELLEDSSFLEALHRVLMDMHVVEGTLV
CPETGRRFPIAEGVPNLMCTEDEVR
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mRNA from alignment at Scaffold_372:55865..60345-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft102_22a-0001 ID=EsuBft102_22a-0001|Name=EsuBft102_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4481bp|location=Sequence derived from alignment at Scaffold_372:55865..60345- (Ectocarpus subulatus male Bft15b)
GAACAGCTACGGAGTACAGAGGCTTAACCCGCCTGGGACACACCAACTGA
TTACACATACACACACCCGCGTGCCGGCGCGTGTCGTTTAGACCCGACGA
AAACCGAAAGGAGGGTTACAGGCTGCTGTCAATCGGCCATCGCCTGCCAC
CGCTGGGCTTCGCTATGCGCCTGCTCACTCATAATGTTCTCCGATCCCCG
ATGAAGGGAGTGGTGGAGGGCTACCCCCTACGCATCGAGGCGACCGACGT
ACAGGTTAGACAAGACAAGACACAGGACTAACGAGTTCCCTCCAAATAGC
AGAGCTTATCGTCAGGATGTTGTTTGTTTTTGTAGGCTATTATCTCTGAT
ACTGCTGGAGGAGCGATGGTTCGTGCCTCCGTGCGGGATTGCCTCGCGTG
TAAAGTGGTATCCTCGTTCTCCGCCAACGCAGGCGGGGTCTCTCGTGTGT
CCCGTAGAAACGAAGTGGCACGGAGATTGTGGACGTCAATGACCATGTGG
GCTCCCACAAGGCTCGAGGTTGTCTTATATCTGTTCGTGTTCTGTCACGT
CCTATTCCAGCCTCGGTGAATACCAGGCAGGATGGATACGACACTGCTGT
AGTGGGATCTGGGATCTCCATCAACACCTGCCTCTCATACAGCACCAGTC
TAGTCTCTTTTCGTTATTCAAGTAGCTCCTGCCCTTTTCCTACAGTAACC
ATATCCGTCTCTCCCTCTTGGCGTCCTTACCCCGCTACCGTCCAGATGGT
GGAATCAGAGGTCAAAAAAGAGTTCGTCAAGCACATGGCGACCACTTTGG
ACTGGGGGGCGCTCTGCAAAGCGGCAGCCGAGGTATGCATGTGAAGCGAT
GCTCAATTTTTCCCAACTGCAGTCCGGGGTCACGCTGTTGGAGCGACGGT
CGCGGCCAAATGGTGTCGCACTTACTTTGAGTTTTCAGCCAAAACCACGC
TTGTGCAGGAAGTTGTCCGTCTATTTTTGTGTCTCCGCATCATGCAAACG
CTTGTCGGGTATAGCGTTTACCCCCGACGCGTGTTGTTTTGAGTGGCGCA
GAAATACATCGTGATGTTTGTATTGGCTTGCCATCAAACCCACCTGCTCT
TATCCTACCATAGCCCTATTACAGCAACATACTCTTACCCCCGACCGTAA
CATCGATAACAGCAAGCAGTATCAATTTCCGAGTCTCTTTTTCAGGCCCA
TAAACGCTACTGCTGCAACCCACAGGCACCCACGTAAGCAATATGAATAC
CGAAAAGTGCGATTGATCGCTGTCGCGCTGTACTAGGGACTGTCAATAGT
GTATCTGCCCCCGCAACCAAGAGGTCGTCGATACCGGGAGAGGGTTGCGT
CGGAAAGTTCTCTTCGAGTTTCTTCCTTGTTTGTGTCGGCAGGGTCTCGC
ACCCCCTTGGTTGTGGATCAATCGACCTGTGGAGCAAGTCGAATATCTCG
CCAGCGTTCGCACTCATGAAAATTGGAAACAGGTTTGTGCTCCTGAAGAT
GTAGTCGAGCGGAATCGTATTTCCCCGCCTCTAATCTGAAACCGTAGGCG
TGGCCGTTGTAGCTGTAAAAACGTCTTATTTCTAAGAAAGCAATGCAGTA
TTTGAAACCAAAATTCCTTCCTGGTGAGGACTTCTGGCCCTGATTCCGTC
CAAGTGCTGTGGTCCTATCTTAAGCGGAGACGATTCAAAAGTATAGTATA
GCGGTTTTCAAGCTTCCAAATCCGATGTGAGAATTGTTCCAGAATTGTTC
CAGTGTACCTCACAGGGAAACCAACCTGTTTTCTTCTTTCAGCCCTTTTT
TCTTGTTTCATCGTCAACTACAGGTTAAGGCACAACAAGAAAACAAGCTT
TGCGTGAAAACACACGCGATTTTCTGTATCGGACCAACCCTCCGCAATAA
AACAAGTGTCTTACGAGAGGCAGACTGGTGTGGCCCGTGTGTGCCTTCGA
GAGACAGGCAGATAGACATCCTGTGTGAAACTCTTCTAAGAAACATGTGC
CTTCCGATGGAAGGCAGAAATCTTGTGTGAAACTCTTGCAATTGAACGTG
TTTCCAAACAAGAGACAGACATCTCTTGTGAACATCTTCCCTTTGGTGGC
CGGCCCCGTGTGCTCCTTCGTCCAGATTGGCATGCCCGAGGGGTCTCTCC
CACCAGCGTTAACGCCGGAGCTTCTGGAAGACTCTTCCTTCTTGGAGGCT
TTGCATCGCGTCTTGATGGACATGCACGTCGTGGAGGGCACTCTCGTCTG
TCCCGAGACCGGACGCAGGTTTCCCATCGCTGAAGGTGTTCCGAATCTCA
TGTGAGCTGCAGTGTCGCTGGCTCGTGTTCCAGTTTTTTTTTGCGAAATA
CTTGTCGTTTCGGGGGATCGTTGAAAGTGCGCCACATCGCCTGTCATTTC
TTGGGCCTTGCTTTTTTTCTACTTTTTTTTTGGTGTCGCTCAAGGCGTGG
ACATCTCGATTTAGTTTTCTGTTGTTGTGCCACTCTTACCCTTGGTCGGC
TTTGGTTGATGTTTCTTCCGTTCATTCTATTCTGTGAAGACAAGCCAGAC
CTCGGTTACACCAGCTGTTTTTTTTTTTTGCTCCTCGCTGTTGTTGTTAT
CGTCACAAAATATGAAGACCGCTCGTGATCGGCAGTCAACAACATCGACT
CTTCGTCGATTGTCGCTTTAACATGTTGCCCCATATGAGGCAGGCCTTCG
AGACCTGAAATATCAACAAACCAAGACAAACTTTTGCATGTCTTGCGGTA
TCGACGGTGTTCCTTATGGCGCACTGCGCTGAAAGAAAGAAGACCGATCG
TGTGAGGTGCAACAGATGGTTGTACATCTGACGCTCGTCGTACCGCGCGT
GTGCGTGCGTCTTCGTGGATCTCTTTGTGTTGGAGAAGCGTTCTGAATCC
CAGAGACAATCGAAACAGCTGCGGCAGACATCTAACCCGCACACGGCAAG
CAAGCCTTAAACAATCACCTTTCTTCCGACCAACCCGCCTGCAGGTGCAC
CGAGGACGAGGTGCGATGACGTACCGTACCGGCGCGAGAACCTCAGCCTC
GTCCGAATTTCTCGGGCGCCTGAGCGGGGGGGTGTGTGTACTCATAGCCG
TCTATGCCGTTCTCGTGAGACCATTGACCTTCCTATCCATACAAAACCGG
AACGGAGTACGTCGGGTTTTCACCCGATCAGGCTATCACACCACCAAGTG
CGAATCGCTCGCCCGGCGAGTCGCATGGAGCGTGCGCTGGGAGCGGGGGG
GTGATGGCGATTTTTGGAGCTTCCAGCCCGACTTTCTGGACCACGAACAG
GGCGGAATGGTTGAGCGACCAGGGCAACCCTACAGAAGATGCGTCGCCAT
GGTGCTGCTGGTAGTGATATTGCCTACCGCCACGTGGTGGCTTGTCGTTT
GTGGATTGGGGAGTTTTTGTATGATCGCCCCCGGCGCTGCACCTCTCCTC
CCGTGCCTCTGGCCCCCCTGTCCTTGGCGGTGAGCGGTGCACAACCAACG
ACTGACGTGAAACTCCCACTTGGGCGCGCGTCCTTATACCCGGTTTAATC
GGAGGAGGGGGGAGGGAAAAAAGTTTTTGCCGTGGGGGGGACAGCTCAAA
CAACGGGCAGAGCGTACCCTAACCGCCGCCACCCTCAGCCGCCTCTCCCT
GTTCGACTTTCTTCAGCTGCTGGGCCACAGCTACAGTCAGTCGGGAGCAT
GTCTGCCAGCTCGTAATCTCTGTATGGCCGAAGAGCAGTCAATCGCGTTG
TTGCCCGCTTTTTGGTTGAGACACCTGGTTGTAGTTGTATGTGGCTTCGG
AGGGAAATAGTGTTCTTTCCGGTGTCTACCACGGTGCGGTGATTCGAGGC
ACCGCGCCTCACATGGTTGCAGCAACACTGACGACGATACCGTACTGGTG
GCTCTACTGTAGTACCCCAAGACCAGGAGAGAAACAAATGTAACATAGGC
AGGGACCACCAGGGGGGCCGTGACTTGGACTTTGTTTTTTGGTGGTGGTG
GTGGTGGGGGGGGGGATTTCATTCNGTGTATCTTTTTCTCTTTGGAAGGT
ATACACCAAACGAGCGCCCTACCCTGCCATGTATCTAAGCGCAACCTGAT
TGACCGGTGGTCTGTCTTCAACGGGATGGTACACATGGCCTCAACCACCA
CAGGACTGCCGCTTTGTGTGGTTTGACATTGATGTGCATGGAAAATAGTT
TTTTACCATGACCGTTCTTTCGTACGTTTTTCTTCCCGTGTTTCTGGGCG
CCTAGGACAAGTTTTCGTCGCGCCTTCGTCGTTGCTCCCTGAGCATCTGC
GCACCAACACGCAAACACGCAGCGCGCACGTACACAGTGACGCTGAGATT
TGCTGCCGACGTGTCAACAGTCTTGTAAGACGGGCGATGGGATCGCTACT
CAGGCCGCTGGGCGTCGGCTTTAAATATTGTGTTTGTTTTTTTTGTCTTA
GCTTTCGGTGTGTGTCATTTGGGGGGGGGGG
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Coding sequence (CDS) from alignment at Scaffold_372:55865..60345-

>EsuBft102_22a-0001 ID=EsuBft102_22a-0001|Name=EsuBft102_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=378bp|location=Sequence derived from alignment at Scaffold_372:55865..60345- (Ectocarpus subulatus male Bft15b)
ATGCGCCTGCTCACTCATAATGTTCTCCGATCCCCGATGAAGGGAGTGGT
GGAGGGCTACCCCCTACGCATCGAGGCGACCGACGTACAGATGGTGGAAT
CAGAGGTCAAAAAAGAGTTCGTCAAGCACATGGCGACCACTTTGGACTGG
GGGGCGCTCTGCAAAGCGGCAGCCGAGATTGGCATGCCCGAGGGGTCTCT
CCCACCAGCGTTAACGCCGGAGCTTCTGGAAGACTCTTCCTTCTTGGAGG
CTTTGCATCGCGTCTTGATGGACATGCACGTCGTGGAGGGCACTCTCGTC
TGTCCCGAGACCGGACGCAGGTTTCCCATCGCTGAAGGTGTTCCGAATCT
CATGTGCACCGAGGACGAGGTGCGATGA
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