EsuBft102_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft102_18a-0001
Unique NameEsuBft102_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:114586..116712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft102_18
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length96
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft102_18aEsuBft102_18aEctocarpus subulatus male Bft15bgeneScaffold_372 114586..116712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_18a-0001EsuBft102_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 114652..116712 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_18a-0001-exonagat-exon-4603Ectocarpus subulatus male Bft15bexonScaffold_372 114586..114678 +
EsuBft102_18a-0001-exonagat-exon-4604Ectocarpus subulatus male Bft15bexonScaffold_372 115299..115913 +
EsuBft102_18a-0001-exonagat-exon-4602Ectocarpus subulatus male Bft15bexonScaffold_372 116390..116630 +
EsuBft102_18a-0001-exonEsuBft102_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 116699..116712 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_18a-0001-exonagat-five_prime_utr-174Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 114586..114651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_18a-0001-cdsEsuBft102_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 114652..114678 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft102_18a-0001 ID=EsuBft102_18a-0001|Name=EsuBft102_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=963bp|location=Sequence derived from alignment at Scaffold_372:114586..116712+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGGAAGACTTCTTCTCGAGCTATCTCCCGGGAGCGGGCCTAGCGGAGCC
CCACTTCCACCTTGACATGGGATATCCCCAATCGCTGCCAATGGACCCTT
ACCGGTGGCACCTGGGCCTTCGCATCCAACGCCGCGTGCGGCAACGGATC
CGCTTCCTCCTTCTCAGCGGTGGCATCGACGTCGAGGTAGACTTAGCTGT
GACTCTAGCCGGCGGAGCGCTTCTGTTGGCATGTAAAGACCAACAGCCGG
TTGCAGCGACCATCCTTGGGCAAAACAGCACCACCGGCGTGAACTCCTCG
ACGAAAAACGGTTACAAGGAAGAGAAACAGACGAACGGCAGTGTCGACAA
GACCAGCGGCGGAGGCACCGTCGGAAAAGAAGCTGTCGAAAACGTTCTCG
GCCGGGACGCAGCAAGCGCCGGCTCCGAGAAGCAGACGCCAGGGGAAACG
GGAGGCGACGAATCTCGAGGCAAGCCCCACCAGCACCAGCACCAGCACCA
GCACCAGCACCAGCACCAGCACCAGTCGGGTGGAGGAGCCGTTCTGTCGG
GCCAGGAGGCGTCGCTGCTGGTGGGGTACCTGCGCGCCGCCGCTCTCACC
GCCGCGGAGACTGGGAGGGCGCAAGAAGGAAGCGTCGCCGGGCCGTCGGC
GGCGGCGGTTGCGGCGACGGCCCCGTCGTTGGGCGAGGAGGACGGCAGCG
AGGAAGAGGGCCCGCCAATGTCTCTTTGGGCAGCCTTGCGGAGCGGCATC
TCTAGCAACGATGACGACGACGACGACGACGCTGGCGTGAGGGGGAGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGTGCGACCAGTACGGCGTGTACCGG
CTACCGGGGCAGGAGGCCTGTTGCGTCGCGACGGGAGCCTGGCGTCTTGC
GACGAGGCTTCCGTGCTGCGGCACCGCGGTAGTGGTAGCGCCACCGGCGG
GGGTACGGGTTGA
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protein sequence of EsuBft102_18a-0001

>EsuBft102_18 ID=EsuBft102_18|Name=EsuBft102_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=298bp
MGYPQSLPMDPYRWHLGLRIQRRVRQRIRFLLLSGGIDVEVDLAVTLAGG
ALLLACKDQQPVAATILGQNSTTGVNSSTKNGYKEEKQTNGSVDKTSGGG
TVGKEAVENVLGRDAASAGSEKQTPGETGGDESRGKPHQHQHQHQHQHQH
QHQSGGGAVLSGQEASLLVGYLRAAALTAAETGRAQEGSVAGPSAAAVAA
TAPSLGEEDGSEEEGPPMSLWAALRSGISSNDDDDDDDAGVRGSGGGGGG
GGGVRPVRRVPATGAGGLLRRDGSLASCDEASVLRHRGSGSATGGGTG
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mRNA from alignment at Scaffold_372:114586..116712+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft102_18a-0001 ID=EsuBft102_18a-0001|Name=EsuBft102_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2127bp|location=Sequence derived from alignment at Scaffold_372:114586..116712+ (Ectocarpus subulatus male Bft15b)
TTGGAAGACTTCTTCTCGAGCTATCTCCCGGGAGCGGGCCTAGCGGAGCC
CCACTTCCACCTTGACATGGGATATCCCCAATCGCTGCCAATGGTACATC
GCGCCTTCCTTTTGTACTGTATTGTTATGGATTTTTTTGCGTTTCCCATG
CGACCTTTTGTCGATTTGCGGTTTTTTGACACGTCGAGGGAGATGGGGAA
GGTGTGCCCGTGGCCATACATGCCGCACAAAGTCGGTAGGCCGTAGACTT
GCTAACATGCCTGTACGAAAGGCAGAGCGGCAAGAGGAGCCTGTGTTGGA
TCCAAGAAGCAGAAGCGGGGAGACGAAAAGAGGAGAAGAAGAAGGATGCT
GTATCCTCGAACGGTACCCAAGCTTAGGTCTAGATAGGAGGTCCATTCGG
GTTGGTTCGTTAGGTTTGGCGTTACCCCTAGGGTTGTTTGTGTTAAGCCT
TATTATACCCGAAAGAAACCGCATCTACTGGCTCGGAAGCTCGGACGTAT
TGGTTTGTTAGGAATAACGTTGACCCTAGGGTTGCTATTGTTAACCCTTG
TCCTACCCAAGCCCGAAAGAAGTCCAATCTACATTGTGTTGGGAGTTGTG
CCCTGAGTGATCTTGTCGCATCCTTGTTATGACTGGGACGACAGCCCAAG
ACCGGATGCCGTGCGTGTGTCTTTGTTCATTTTTTTTGCCTCCGCTCCCT
TGGTGCTCGCCAGGACCCTTACCGGTGGCACCTGGGCCTTCGCATCCAAC
GCCGCGTGCGGCAACGGATCCGCTTCCTCCTTCTCAGCGGTGGCATCGAC
GTCGAGGTAGACTTAGCTGTGACTCTAGCCGGCGGAGCGCTTCTGTTGGC
ATGTAAAGACCAACAGCCGGTTGCAGCGACCATCCTTGGGCAAAACAGCA
CCACCGGCGTGAACTCCTCGACGAAAAACGGTTACAAGGAAGAGAAACAG
ACGAACGGCAGTGTCGACAAGACCAGCGGCGGAGGCACCGTCGGAAAAGA
AGCTGTCGAAAACGTTCTCGGCCGGGACGCAGCAAGCGCCGGCTCCGAGA
AGCAGACGCCAGGGGAAACGGGAGGCGACGAATCTCGAGGCAAGCCCCAC
CAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGTCGGG
TGGAGGAGCCGTTCTGTCGGGCCAGGAGGCGTCGCTGCTGGTGGGGTACC
TGCGCGCCGCCGCTCTCACCGCCGCGGAGACTGGGAGGGCGCAAGAAGGA
AGCGTCGCCGGGCCGTCGGCGGCGGCGGTTGCGGCGACGGCCCCGTCGTT
GGGCGAGGAGGACGGCAGCGAGGAAGAGGTAGGTGAGTGGGGCGGCGAGG
TTTTTGTTTGTGGCATGTACCGAGACCATTTCGTTTTTTGTGCAGTCTGC
GGCAGTTGTACCGTGGCCGCTCATTTTTGGCGGTCTGCAGTATTGCGCCA
ACGAGCTCCGGCGTGGGAGTGGGTGCTTGTGCGGCCACGTGCGGGGGTTG
GAGGTGGGGTCGGGCAAAGCAGCGAGGCTGAGGAACCACATTTGTTGTTT
CGTTCGAAGGTTCAGATTGACTAAAACCAGAGGAAGAGGGGGAGGGAGAG
AGCATTACAGAGAGAGAGCAAGGGGCGAGAGGTGGAGATACATTGTGATG
GGAGACCAGCTGTGTCCTGCCTGCTTGCTGTATTTCACGTTATCTCGCCC
GAACGGAAAGTAGCACCACTTTGGCCTGCTTTGTGACAGATGTCGACACA
CTATCTCATCCCCAATTTTTTTTCTCTACCGCCCACCCCGGCCCTGTCCC
CCAGGGCCCGCCAATGTCTCTTTGGGCAGCCTTGCGGAGCGGCATCTCTA
GCAACGATGACGACGACGACGACGACGCTGGCGTGAGGGGGAGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGTGCGACCAGTACGGCGTGTACCGGCTAC
CGGGGCAGGAGGCCTGTTGCGTCGCGACGGGAGCCTGGCGTCTTGCGACG
AGGCTTCCGTGCTGCGGCACCGCGGTAGTGGTAGCGCCACCGGCGGTAAG
ACCTCAATAATTCGAGACGAACTACTGTAGCCTTCGCGAGGATATTTATC
TTGATTTTAGCAGGGGGTACGGGTTGA
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Coding sequence (CDS) from alignment at Scaffold_372:114586..116712+

>EsuBft102_18a-0001 ID=EsuBft102_18a-0001|Name=EsuBft102_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=897bp|location=Sequence derived from alignment at Scaffold_372:114586..116712+ (Ectocarpus subulatus male Bft15b)
ATGGGATATCCCCAATCGCTGCCAATGGACCCTTACCGGTGGCACCTGGG
CCTTCGCATCCAACGCCGCGTGCGGCAACGGATCCGCTTCCTCCTTCTCA
GCGGTGGCATCGACGTCGAGGTAGACTTAGCTGTGACTCTAGCCGGCGGA
GCGCTTCTGTTGGCATGTAAAGACCAACAGCCGGTTGCAGCGACCATCCT
TGGGCAAAACAGCACCACCGGCGTGAACTCCTCGACGAAAAACGGTTACA
AGGAAGAGAAACAGACGAACGGCAGTGTCGACAAGACCAGCGGCGGAGGC
ACCGTCGGAAAAGAAGCTGTCGAAAACGTTCTCGGCCGGGACGCAGCAAG
CGCCGGCTCCGAGAAGCAGACGCCAGGGGAAACGGGAGGCGACGAATCTC
GAGGCAAGCCCCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAC
CAGCACCAGTCGGGTGGAGGAGCCGTTCTGTCGGGCCAGGAGGCGTCGCT
GCTGGTGGGGTACCTGCGCGCCGCCGCTCTCACCGCCGCGGAGACTGGGA
GGGCGCAAGAAGGAAGCGTCGCCGGGCCGTCGGCGGCGGCGGTTGCGGCG
ACGGCCCCGTCGTTGGGCGAGGAGGACGGCAGCGAGGAAGAGGGCCCGCC
AATGTCTCTTTGGGCAGCCTTGCGGAGCGGCATCTCTAGCAACGATGACG
ACGACGACGACGACGCTGGCGTGAGGGGGAGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGTGCGACCAGTACGGCGTGTACCGGCTACCGGGGCAGGAGG
CCTGTTGCGTCGCGACGGGAGCCTGGCGTCTTGCGACGAGGCTTCCGTGC
TGCGGCACCGCGGTAGTGGTAGCGCCACCGGCGGGGGTACGGGTTGA
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