EsuBft102_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft102_11a-0001
Unique NameEsuBft102_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:222387..223873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog28377.ENSACAP00000022069
ProteomeIdEsuBft102_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length148
Evalue7.97e-10
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata,49BMJ@7742|Vertebrata
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft102_11aEsuBft102_11aEctocarpus subulatus male Bft15bgeneScaffold_372 222387..223873 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_11a-0001-exonEsuBft102_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 222387..223873 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_11a-0001-exonagat-three_prime_utr-284Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 222387..223388 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_11a-0001-cdsEsuBft102_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 223389..223781 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_11a-0001-exonagat-five_prime_utr-170Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 223782..223873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_11a-0001EsuBft102_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 223389..223781 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft102_11a-0001 ID=EsuBft102_11a-0001|Name=EsuBft102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1487bp|location=Sequence derived from alignment at Scaffold_372:222387..223873- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GACGTACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCCC
AGCTGCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGTACGA
CGGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAG
TGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCCAACAGCGGAG
CACTACACAAAGCTCAATGAGACCCACCGCCAGTTCCTTACACGGTGCAT
CGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGG
CCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAA
CGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAGCCGCCT
CCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGG
GCGGGCAGGAGNGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGC
AGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGAAAGCAGAAGCA
GAGAGTACGACCATCTCAGGACCGAAGAGAAAGGGACCCGGGGAAGCGGC
GGTGGGGGGGAAGAAACGGCGGCTGGGCACTGCTGTAGAAGCGAGTAGGG
CGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGTCGATGTTGTTGC
GCCCTGTTACCCTCCCTGCTGTATGCTATACTCCTTTATGTATGTCCTTT
GTATTGCCTTCGGCCTCTGTGCTGTGTTTTTTTTTTCATGACCTCCCTGC
CTTCTCTGCTGTGTTGGGTACCTTGATCTCGCTTTGCTGTTGCCTTTGTT
TTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGC
TCCGTTACTCCCATGCCCTGGTGCGTGGTGCCTGGTGCTGGTACGTTACC
CTTTGATTTTTCTTGTAGGCGGGTGTGTGAAGCGTCCTCCTTTATTTTTG
TTTTGTTTTATTTTGATCGGTTTCCTAGGGCTCTTTTCTCGAACGGTCGG
TGCGATACCTGTTATTTCTTTCTGTCATTTTTGTTTTCTTTTTCCGAGTG
GTTTGTACCCTATTTTTGTTCTTTCGTTTTCCCGCGGCGTCGTATGTGCT
TCTATCATTTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCTATTTTTGTT
CTTTCGTTTTCCCGCGGCGTCGTATGTGCTTCTATCATTTTTGTTTTCTT
TTTCCGAGTGGTTTGTACCCTATTTTTGTTCTTTCGTTTTCCCGCGGCGT
CGTATGTGCTTCTATCATTTTTGTTTTCTTTTTCCGAGTGGTTTGTACCC
TATTTTTGTTCTTTCGTTTTCCCGCGGCGTCGTATGTGCTTCTATCATTT
TTGTTTTCTTTTTCCGAGTGGTTTGTACCCTATTTTTGTTCTTTCGTTTT
CCCGCGGCGTCGTATGTGCTTCTATCATTTTTGTTTT
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protein sequence of EsuBft102_11a-0001

>EsuBft102_11 ID=EsuBft102_11|Name=EsuBft102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=130bp
MYDGRRANRQLKIRLLQAEVVETLLYGCASWSPTAEHYTKLNETHRQFLT
RCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMED
SRLPKRMLLGAMAGGVGYRGGQEXTGRHGS
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mRNA from alignment at Scaffold_372:222387..223873-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft102_11a-0001 ID=EsuBft102_11a-0001|Name=EsuBft102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1487bp|location=Sequence derived from alignment at Scaffold_372:222387..223873- (Ectocarpus subulatus male Bft15b)
GACGTACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCCC
AGCTGCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGTACGA
CGGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAG
TGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCCAACAGCGGAG
CACTACACAAAGCTCAATGAGACCCACCGCCAGTTCCTTACACGGTGCAT
CGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGG
CCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAA
CGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAGCCGCCT
CCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGG
GCGGGCAGGAGNGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGC
AGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGAAAGCAGAAGCA
GAGAGTACGACCATCTCAGGACCGAAGAGAAAGGGACCCGGGGAAGCGGC
GGTGGGGGGGAAGAAACGGCGGCTGGGCACTGCTGTAGAAGCGAGTAGGG
CGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGTCGATGTTGTTGC
GCCCTGTTACCCTCCCTGCTGTATGCTATACTCCTTTATGTATGTCCTTT
GTATTGCCTTCGGCCTCTGTGCTGTGTTTTTTTTTTCATGACCTCCCTGC
CTTCTCTGCTGTGTTGGGTACCTTGATCTCGCTTTGCTGTTGCCTTTGTT
TTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGC
TCCGTTACTCCCATGCCCTGGTGCGTGGTGCCTGGTGCTGGTACGTTACC
CTTTGATTTTTCTTGTAGGCGGGTGTGTGAAGCGTCCTCCTTTATTTTTG
TTTTGTTTTATTTTGATCGGTTTCCTAGGGCTCTTTTCTCGAACGGTCGG
TGCGATACCTGTTATTTCTTTCTGTCATTTTTGTTTTCTTTTTCCGAGTG
GTTTGTACCCTATTTTTGTTCTTTCGTTTTCCCGCGGCGTCGTATGTGCT
TCTATCATTTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCTATTTTTGTT
CTTTCGTTTTCCCGCGGCGTCGTATGTGCTTCTATCATTTTTGTTTTCTT
TTTCCGAGTGGTTTGTACCCTATTTTTGTTCTTTCGTTTTCCCGCGGCGT
CGTATGTGCTTCTATCATTTTTGTTTTCTTTTTCCGAGTGGTTTGTACCC
TATTTTTGTTCTTTCGTTTTCCCGCGGCGTCGTATGTGCTTCTATCATTT
TTGTTTTCTTTTTCCGAGTGGTTTGTACCCTATTTTTGTTCTTTCGTTTT
CCCGCGGCGTCGTATGTGCTTCTATCATTTTTGTTTT
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Coding sequence (CDS) from alignment at Scaffold_372:222387..223873-

>EsuBft102_11a-0001 ID=EsuBft102_11a-0001|Name=EsuBft102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=393bp|location=Sequence derived from alignment at Scaffold_372:222387..223873- (Ectocarpus subulatus male Bft15b)
ATGTACGACGGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTACTCCA
GGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCCAA
CAGCGGAGCACTACACAAAGCTCAATGAGACCCACCGCCAGTTCCTTACA
CGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTA
TGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCG
TGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGAC
AGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGG
ATACCGGGGCGGGCAGGAGNGGACGGGGCGGCATGGTTCATGA
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