EsuBft1029_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1029_2a-0001
Unique NameEsuBft1029_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:297555..301556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog34373.CCU76267
ProteomeIdEsuBft1029_2
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl4751|Fungi
Length3175
Evalue1.42e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,20YYK@147548|Leotiomycetes
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_2aEsuBft1029_2aEctocarpus subulatus male Bft15bgeneScaffold_70 297555..301556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_2a-0001EsuBft1029_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 297555..297923 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_2a-0001-exonagat-exon-26122Ectocarpus subulatus male Bft15bexonScaffold_70 297555..298398 +
EsuBft1029_2a-0001-exonagat-exon-26124Ectocarpus subulatus male Bft15bexonScaffold_70 298686..299042 +
EsuBft1029_2a-0001-exonagat-exon-26121Ectocarpus subulatus male Bft15bexonScaffold_70 299227..300507 +
EsuBft1029_2a-0001-exonagat-exon-26123Ectocarpus subulatus male Bft15bexonScaffold_70 300674..300873 +
EsuBft1029_2a-0001-exonagat-exon-26120Ectocarpus subulatus male Bft15bexonScaffold_70 300947..301173 +
EsuBft1029_2a-0001-exonEsuBft1029_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 301291..301556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_2a-0001-cdsEsuBft1029_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 297555..297923 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_2a-0001-exonagat-three_prime_utr-272Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 297924..298398 +
EsuBft1029_2a-0001-exonagat-three_prime_utr-273Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 298686..299042 +
EsuBft1029_2a-0001-exonagat-three_prime_utr-274Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 299227..300507 +
EsuBft1029_2a-0001-exonagat-three_prime_utr-275Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 300674..300873 +
EsuBft1029_2a-0001-exonagat-three_prime_utr-276Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 300947..301173 +
EsuBft1029_2a-0001-exonagat-three_prime_utr-277Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 301291..301556 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1029_2a-0001 ID=EsuBft1029_2a-0001|Name=EsuBft1029_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3175bp|location=Sequence derived from alignment at Scaffold_70:297555..301556+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTTGTGATCCACGTAGACGACATCTTCTCTATCGGGCTCAAGAG
CAGGTGCGATCAGTTTGGTGTTGACCTCAACCGGTATGTGCCCATTTCCA
ACCTTGGGGAACTGCGATGGTATGCGGGTTGCCGGTTTTCTCGTGACACG
GCGTGGGGGACGGTGACTATTTCGCAACAGGCTGTAGCGGAGAAGATCGT
TGCCAAGTTCGGTGTGACGACGGACAAAGAGACACCTATGGTCGTTGGGT
TGAAGCTTGAGCAGTACGACGCCGACGAGCCCGATGTCGACGAGCCTTTC
CGGTCGCTAGTGGGACACTTGATGTGGCTGGCGAATCAGACTCGCCCGGA
TATTCTCAACGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGAGGAGACCACATGGAACTTTTTGTCGATT
CGGACTTCGCCAACAAGGCACCCGACCGGCGGACTGTTTCTGGGGCACTA
GTGATGTTCGCTGGTGCGTGTGTGATGTATCTGTGTAGGACGCAGAAGAG
CGTCACCCTGTCTTCGACGGAAGCGGAGTACGTGGCGATGTCTGATGGGA
TGAAGGAGGCTATTTTTCTGCGGTATCTGTGGAAGTTTATCTTTCCGGGC
CGTGATGTGGGGTGCACGCCGGTGTGGGAGGACAACGTAGGCGCTATTCA
CTTGGCAAGTAACCCGGCTACTACTCCCAACTCGAAGCACATCGACATCC
GCCACCATTTCATCCGTGAGCGTGTAGCACGGGGGGAGTTCAAGGTGGTT
TGTATTTGAGACTTTCTCCCCGTGTCCTTCCATCACGAGCATTCGATTGC
TAGCCGCCATTGCCTGTGTGTTAGATTGGGACTTGTTGTGTCATTTCGAT
GCCGAGCAAGCCTTTGTCCAAACAGAACTGGATGAGGTTGTGTTCATTCG
TCTTTTTTTGGGTGCGGTGCGCTTTCCGGTAAGGTCGTACGGTTGAGACG
GAGTCTATACGGTCTGAAGCAGGCGTCCCGCACATGGCATCATCACTTGA
TGCGTGGCATGAAGAGTCTTGGTTTCGAGCCTTGTGCCGCCGATGCGTGT
GTGATGCGTCTGATCGAGAGCGGTGTAGTCACCATGGTGGTTGTGATCCA
CACGACATCTGCTCTATCGGGCTCAAGAGCAGGTAGGTGCGATCAGTTTG
GTGTTGACCTCAACCGGTATGTGCCCATTTCCAACCTTGGGGAACTGCGC
TGGTATGCGGGTTGCCGGTTTTCTCGTGACACGGTGTTGGGGACGGTGAC
TATTTCGCAACAGGCTGTAGCGGAGAAGATCGTTGCCAAGTTCGGTGTGA
CGACGGACAAAGAGACACCTATGGTCGTTGGGTTGAAGCTTGAGCAGTAC
GACGCCGACGAGCCCGATGTCGACGAGCCTTTCCGGTCGCTAGTGGGACA
CTTGATGTGGCTGGCGAATCAGACTCGCCCGGATATTCTCAACGCGGTGC
GTGCCGTTGCGAGGTATTCGCACGCGCCGAAGCGACTGCACTGGGAGGCG
GCTTTGCATGTTTTGATGTATGTTAGATTCACGAGCGGGTACGGGATTAC
TTTTCAGAGGGGCACGGTGGGAGGAGACCACATGGAACTTTTTGTCGATT
CGGACTTCGCCAACAAGGCAACCGACCGGCGGTCTGTTTCTGGGGCACTA
GTGATGTTCGCTGGTGCGTGTGTGATGTATCTGTGTAGGACACAGAAGAA
GAGCGTCACCCTGTCTTCGACGGAAGCGGAGTACGTGGCGATGTCTGATG
GGATGAAGGAGGCTATTTTTCTGCGGTTTCTGTGGAAAATTATCTTTTCG
GGCCGTGATGTGGGGTGCACGCCGGTGTGGGAGGATAACGTAGGCGCTAT
TCACTTGGCAAGGAACCCGGCTACTACTCCCCAACTCGAAGCACATCGAC
ATCCGCCACCATTTCATCCGTGAGCGTGTAGCACGGGGGGAGTTCAAGGT
AGTCCACGTACGGTCGGACCTGCAACGCGCGGATTTCTTGACCAAACCGC
TCCCCAAGGAGACTTTTTGCGCGCATCGTGACTTCGTGATGAATATTCGT
TGATTTTGTTCTTGGTGTTGCACTATTTCAGCGATGGGGCCTTTCTTGCA
CCATGTGTTTTATTTGTGACCTGGTACTGGCCTTTGATCTGCTGCTCGAT
GTTGATTTCTGCTTTCGCGATGGATGGGATAGTTCTGCGTGAGAATCATG
GGGGGGGAAGTATTGTTCCATGATCCTAGTCGCAGGTGGTTTGTCTTGGT
TTTGATTTTTTTCGGGATGAATGATGCAGCAGGGGGGCTGTTGGATTGAT
TGATTGATTTGATTTTGACTTCATGTTCAGGATGGAATGGATGTTACAGC
AGGGGGGCTGGTGGAGTGGTTTCTTTGTCAAGGTATTGGATGTCGGAGAG
AGGGTTTGGCATGTTCTTGTAGTTTGAACTGGCCATTGAGTTGAAACATG
AATATTTATCTGAGGAATGAATTTGTTCTGAGTAGTCAGGACGTAAGACA
CGTTTTCCCGGAGTTACCCGTCCTCCCCGTTCTGACGTGATTCTGATGGA
ACGTTGATCTTTTTGCCGGGTATTTTCCAAGGGGTGATTGTTCGTGTTTT
GACTGCTTGAGAATTGGGTAAATAAAGCACTTTTCTCGAGAGGGTGATTT
GTTTTTCTTGACAGACCTTTCAGGGGTAGAAATTTGATATCAAAAAGGTT
TGAAAGCTTTGCAGGACGTGTTATGTTGGAAGATCCGGCGATTTCGTGGG
ACATGTTCTATTGGCAGAGTCGTTTGGATTGGAATGGTGGATGATTTATT
GTTANAAAGGGGTTTTGGTTTTTCTGTCTGCCGTTTTGTCTATGAATGAT
AGTCGTGTCGGGGATTGATTTCGTAGATAGTATCTCGTACCGAGCAGGGG
GGCTGTTTGGGGTGCTCGGCAGAGTATACTGTCTACGGGGCCTCCGGGGG
GTACGCGGATGGAATCTATTGACGGACATGCTGCATGGTGATGGTGTGGC
CTACCCCATGTCTCTCACTCTCTAAGTAACAAGGTCTTGAGTCAACCTTC
TTTCTCTTTCGGCCTCTGACGAGCC
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protein sequence of EsuBft1029_2a-0001

>EsuBft1029_2 ID=EsuBft1029_2|Name=EsuBft1029_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=123bp
MVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDT
AWGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPF
RSLVGHLMWLANQTRPDILNAVX
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mRNA from alignment at Scaffold_70:297555..301556+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1029_2a-0001 ID=EsuBft1029_2a-0001|Name=EsuBft1029_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4002bp|location=Sequence derived from alignment at Scaffold_70:297555..301556+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTTGTGATCCACGTAGACGACATCTTCTCTATCGGGCTCAAGAG
CAGGTGCGATCAGTTTGGTGTTGACCTCAACCGGTATGTGCCCATTTCCA
ACCTTGGGGAACTGCGATGGTATGCGGGTTGCCGGTTTTCTCGTGACACG
GCGTGGGGGACGGTGACTATTTCGCAACAGGCTGTAGCGGAGAAGATCGT
TGCCAAGTTCGGTGTGACGACGGACAAAGAGACACCTATGGTCGTTGGGT
TGAAGCTTGAGCAGTACGACGCCGACGAGCCCGATGTCGACGAGCCTTTC
CGGTCGCTAGTGGGACACTTGATGTGGCTGGCGAATCAGACTCGCCCGGA
TATTCTCAACGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGAGGAGACCACATGGAACTTTTTGTCGATT
CGGACTTCGCCAACAAGGCACCCGACCGGCGGACTGTTTCTGGGGCACTA
GTGATGTTCGCTGGTGCGTGTGTGATGTATCTGTGTAGGACGCAGAAGAG
CGTCACCCTGTCTTCGACGGAAGCGGAGTACGTGGCGATGTCTGATGGGA
TGAAGGAGGCTATTTTTCTGCGGTATCTGTGGAAGTTTATCTTTCCGGGC
CGTGATGTGGGGTGCACGCCGGTGTGGGAGGACAACGTAGGCGCTATTCA
CTTGGCAAGTAACCCGGCTACTACTCCCAACTCGAAGCACATCGACATCC
GCCACCATTTCATCCGTGAGCGTGTAGCACGGGGGGAGTTCAAGGTAGTC
CACGTACGGTCGGACCTGCAACGCGCGGATTTCTTGACCAAACCGCTCCC
CAAGGAGACTTTTTGCGCGCATCGTGACTTCGTGATGAATATTCGTTGAT
TTTGTTCTTTGTGTTGCACTATTTCAGCGATGGGACCTTTTTTGCATCAT
GTGTTTTATTTGTGACCTGGTACTGGCCTTTGATCTGCTGCTCGATGTTG
ATTTCTGCTTTCGCGATGGATGGGATAGTTCTGCGTGAGAATCATGGGGG
GGGAAGTATTGTTCCATGATCCTAGTCGCAGGTGGTTTGTATTTGAGACT
TTCTCCCCGTGTCCTTCCATCACGAGCATTCGATTGCTAGCCGCCATTGC
CTGTGTGTTAGATTGGGACTTGTTGTGTCATTTCGATGCCGAGCAAGCCT
TTGTCCAAACAGAACTGGATGAGGTTGTGTTCATTCGTCTTTTTTTGGGT
GCGGTGCGCTTTCCGGTAAGGTCGTACGGTTGAGACGGAGTCTATACGGT
CTGAAGCAGGCGTCCCGCACATGGCATCATCACTTGATGCGTGGCATGAA
GAGTCTTGGTTTCGAGCCTTGTGCCGCCGATGCGTGTGTGATGCGTCTGA
TCGAGAGCGGTGTAGTCACCATGGTGGTTGTGATCCACGTAGACGACATC
TTCTCTATCNTCGTCGGTGTCCGACAAGGAATATCCTCATGTGATTGATC
ACTTATTACTATGCCCAGATAATACCAATTCCGTACGAGACACACAATTT
TAATAAGCTACACCATACATATTAGACTAGTCTACCCTTTTTACAAACCC
CCGGTGGTTGTGATCCACGTAGACGACATCTGCTCTATCGGGCTCAAGAG
CAGGTAGGTGCGATCAGTTTGGTGTTGACCTCAACCGGTATGTGCCCATT
TCCAACCTTGGGGAACTGCGCTGGTATGCGGGTTGCCGGTTTTCTCGTGA
CACGGTGTTGGGGACGGTGACTATTTCGCAACAGGCTGTAGCGGAGAAGA
TCGTTGCCAAGTTCGGTGTGACGACGGACAAAGAGACACCTATGGTCGTT
GGGTTGAAGCTTGAGCAGTACGACGCCGACGAGCCCGATGTCGACGAGCC
TTTCCGGTCGCTAGTGGGACACTTGATGTGGCTGGCGAATCAGACTCGCC
CGGATATTCTCAACGCGGTGCGTGCCGTTGCGAGGTATTCGCACGCGCCG
AAGCGACTGCACTGGGAGGCGGCTTTGCATGTTTTGATGTATGTTAGATT
CACGAGCGGGTACGGGATTACTTTTCAGAGGGGCACGGTGGGAGGAGACC
ACATGGAACTTTTTGTCGATTCGGACTTCGCCAACAAGGCAACCGACCGG
CGGTCTGTTTCTGGGGCACTAGTGATGTTCGCTGGTGCGTGTGTGATGTA
TCTGTGTAGGACACAGAAGAAGAGCGTCACCCTGTCTTCGACGGAAGCGG
AGTACGTGGCGATGTCTGATGGGATGAAGGAGGCTATTTTTCTGCGGTTT
CTGTGGAAAATTATCTTTTCGGGCCGTGATGTGGGGTGCACGCCGGTGTG
GGAGGATAACGTAGGCGCTATTCACTTGGCAAGGAACCCGGCTACTACTC
CCCAACTCGAAGCACATCGACATCCGCCACCATTTCATCCGTGAGCGTGT
AGCACGGGGGGAGTTCAAGGTAGTCCACGTACGGTCGGACCTGCAACGCG
CGGATTTCTTGACCAAACCGCTCCCCAAGGAGACTTTTTGCGCGCATCGT
GACTTCGTGATGAATATTCGTTGATTTTGTTCTTGGTGTTGCACTATTTC
AGCGATGGGGCCTTTCTTGCACCATGTGTTTTATTTGTGACCTGGTACTG
GCCTTTGATCTGCTGCTCGATGTTGATTTCTGCTTTCGCGATGGATGGGA
TAGTTCTGCGTGAGAATCATGGGGGGGGAAGTATTGTTCCATGATCCTAG
TCGCAGGTGGTTTGTCTTGGTTTTGATTTTTTTCGGGATGAATGATGCAG
CAGGGGGGCTGTTGGATTGATTGATTGATTTGATTTTGACTTCATGTTCA
GGATGGAATGGATGTTACAGCAGGGGGGCTGGTGGAGTGGTTTCTTTGTC
AAGGTATTGGATGTCGGNTCCTAGTCGCAGGTGGTTTGTTTTGGTTTTGA
TTTTTCGGGATGAATGATGCCGCAGGGGGGCTGTTGGATTATTGATTGAT
TTTGACTTCATGTTCAGGATGGAATGGATGTTACAGCAGGGGGGCTGGTG
GAGTGGTTTCTTTGTCAAGGTATTGGATGTCGGAGAGAGGGTTTGGCATG
TTCTTGTAGTTTGAACTGGCCATTGAGTTGAAACATGAATATTTATCTGA
GGAATGAATTTGTTCTGAGTAGTCAGGACGTAAGACACGTTTTCCCGGAG
TTACCCGTCCTCCCCGTTCTGACGTGATTCTGATGGAACGTTGATCTTTT
TGCCGGGTATTTTCCAAGGGTGATTGTTCGTGTTTTGANTGACGTGATTC
TGATGTGTGTAATGTTGATCTTTTGCTGGGTATTTTTCCAAGGGTGATTG
TTCGTGTTTTGACTGCTTGAGAATTGGGTAAATAAAGCACTTTTCTCGAG
AGGGTGATTTGTTTTTCTTGACAGACCTTTCAGGGGTAGAAATTTGATAT
CAAAAAGGTTTGAAAGCTTTGCAGGACGTGTTATGTTGGAAGATCCGGCG
ATTTCGTGGGACATGTTCTATTGGCAGAGTCGTTTGGATTGGAATGGTGG
ATGATTTATTGTTANAAAGGTTTGAAAGCTTTGCAGGACGTGTTATGTTG
GAAGATCCGGCGATTTCGTGGGACATGTTCTATTGGCAGAGTCGTTTGGA
TTGGAATGGTGGATGATTTACTGTTAACATAGATAGGGGTTTTGGTTTTT
CTGTCTGCCGTTTTGTCTATGAATGATAGTCGTGTCGGGGATTGATTTCG
TAGATAGTATCTCGTACCGAGCAGGGGGGCTGTTTGGGGTGCTCGGCAGA
GTATACTGTCTACGGGGCCTCCGGGGGGTACGCGGATGGAATCTATTGAC
GGACATGCTGCATGGTGATGGTGTGGCCTACCCCATGTCTCTCACTCTCT
AAGTAACAAGGTCTTGAGTCAACCTTCTTTCTCTTTCGGCCTCTGACGAG
CC
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Coding sequence (CDS) from alignment at Scaffold_70:297555..301556+

>EsuBft1029_2a-0001 ID=EsuBft1029_2a-0001|Name=EsuBft1029_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=369bp|location=Sequence derived from alignment at Scaffold_70:297555..301556+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTTGTGATCCACGTAGACGACATCTTCTCTATCGGGCTCAAGAG
CAGGTGCGATCAGTTTGGTGTTGACCTCAACCGGTATGTGCCCATTTCCA
ACCTTGGGGAACTGCGATGGTATGCGGGTTGCCGGTTTTCTCGTGACACG
GCGTGGGGGACGGTGACTATTTCGCAACAGGCTGTAGCGGAGAAGATCGT
TGCCAAGTTCGGTGTGACGACGGACAAAGAGACACCTATGGTCGTTGGGT
TGAAGCTTGAGCAGTACGACGCCGACGAGCCCGATGTCGACGAGCCTTTC
CGGTCGCTAGTGGGACACTTGATGTGGCTGGCGAATCAGACTCGCCCGGA
TATTCTCAACGCGGTNNNN
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