EsuBft1028_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1028_9a-0001
Unique NameEsuBft1028_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_481contigScaffold_481:352502..352994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1028_9
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteprobable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length300
Evalue4.43e-35
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_9aEsuBft1028_9aEctocarpus subulatus male Bft15bgeneScaffold_481 352502..352994 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_9a-0001-exonEsuBft1028_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_481 352502..352797 -
EsuBft1028_9a-0001-exonagat-exon-7198Ectocarpus subulatus male Bft15bexonScaffold_481 352991..352994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_9a-0001-cdsEsuBft1028_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_481 352502..352797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_9a-0001EsuBft1028_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_481 352502..352994 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1028_9a-0001 ID=EsuBft1028_9a-0001|Name=EsuBft1028_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=300bp|location=Sequence derived from alignment at Scaffold_481:352502..352994- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACCCCCCCCCTACAACCTAGTAGATGGAGGGAAGGAGTGGTTGT
GAACCTGTTCAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGA
TCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGTTGAATGAT
AGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGC
AGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGA
GAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTNNNN
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protein sequence of EsuBft1028_9a-0001

>EsuBft1028_9 ID=EsuBft1028_9|Name=EsuBft1028_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MVTPPLQPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLND
RIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAGKPTYCXX
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mRNA from alignment at Scaffold_481:352502..352994-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1028_9a-0001 ID=EsuBft1028_9a-0001|Name=EsuBft1028_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=493bp|location=Sequence derived from alignment at Scaffold_481:352502..352994- (Ectocarpus subulatus male Bft15b)
ATGGGTATGGTGAACATGGTGCGCGGAGGTCTCCTTGCCTCGCCCATGTC
TCTCACTCGTTAAACTGTTTGACGAATGAAAAACGTGGGTGACACGAAAG
GAGCCTCGCGCATCATGTTGACCATTCCTATGAAACACCCACGTAGCCCC
CAGAGGCCCCGCATAGCAGTCCTACTTCACTAGATACCCATAAATAGTCA
CCCCCCCCCTACAACCTAGTAGATGGAGGGAAGGAGTGGTTGTGAACCTG
TTCAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGATCACACT
GTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGTTGAATGATAGGATAG
TGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTC
CGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCAT
CCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTNNNN
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Coding sequence (CDS) from alignment at Scaffold_481:352502..352994-

>EsuBft1028_9a-0001 ID=EsuBft1028_9a-0001|Name=EsuBft1028_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=300bp|location=Sequence derived from alignment at Scaffold_481:352502..352994- (Ectocarpus subulatus male Bft15b)
ATGGTCACCCCCCCCCTACAACCTAGTAGATGGAGGGAAGGAGTGGTTGT
GAACCTGTTCAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGA
TCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGTTGAATGAT
AGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGC
AGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGA
GAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTNNNN
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