EsuBft1028_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1028_8a-0001
Unique NameEsuBft1028_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_481contigScaffold_481:354318..355997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7897.ENSLACP00000018049
ProteomeIdEsuBft1028_8
Protein domainsIPR005135
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length147
Evalue2.65e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria,487I3@7711|Chordata,4962T@7742|Vertebrata
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K04257,ko:K13506
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04740,map00561,map00564,map01100,map01110,map04740
KEGG ModuleM00089
EC2.3.1.15
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04030
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_8aEsuBft1028_8aEctocarpus subulatus male Bft15bgeneScaffold_481 354318..355997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_8a-0001EsuBft1028_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_481 354429..355340 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_8a-0001-exonagat-exon-7197Ectocarpus subulatus male Bft15bexonScaffold_481 354318..355558 +
EsuBft1028_8a-0001-exonEsuBft1028_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_481 355766..355997 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_8a-0001-exonagat-five_prime_utr-160Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_481 354318..354428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_8a-0001-cdsEsuBft1028_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_481 354429..355340 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_8a-0001-exonagat-three_prime_utr-268Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_481 355341..355558 +
EsuBft1028_8a-0001-exonagat-three_prime_utr-269Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_481 355766..355997 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1028_8a-0001 ID=EsuBft1028_8a-0001|Name=EsuBft1028_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1473bp|location=Sequence derived from alignment at Scaffold_481:354318..355997+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGGATTCCTGGTCAAGGAACACTTGTTTGACGTGGTGGAAGTAGTGGT
GAAAACGTATTTCGAGGAAGGCCTATGGCTTCAGATACCTGGGGAGCGGG
GTGAGTAATATATGTTTCTAGGGAACGTATACGTCCCACCGTCGTCGAAG
AAAGTCGCAAGCAAGGCGCAGGAGAACTTTGGACAAATTGGGGAAGATGT
CCAGAGGTTCAGTAGGAAGGGAGAAGTTGTCATGGTGGGCGATTTCAACT
CCAGAGTAGGGAAAGCTTCCAGTAGAGGACAGGCGATCGGGCAGCACGGA
GAAGACAAAGTGAATGACAACGAAGTGAGGATGCTTGTATTCTCGGAAAG
CAACGAACTGATGGTGTTGAACGGTAGGAGAGAATGCGATAAGCCGGAGT
TCACCAGGCAACGGACAGTTTGCAGTGAATACTCGATGCTCGACTACATC
CTGGTAGATAGGGAGAGCACACAGATCCCAGAGCTGCACGTAAGTGCGAT
AGAAATAGGTTCGACCGACCACTTCCTCATATGGGCAAACATCAACCGAT
CTAGAAAAGTGGAGAGTAAAAAACAGAGGAAAGTGTTCCGGTGGAAAAAA
GAGCGTTTGGGAGACGAGGGGACACGGGATGAATTCCAGAAGGGACTGGC
TGGTAGTGTAGAACCCTTCAAGAAACTGCTGACAGGCGTCGAAGACGGAC
AGGTAGGCGTACAAGCAGCAGGGGACAGCGTGATTGAAGGGTGGGAGTCC
ATAGCGAACGCAACGGCAGAGAGAGTAGTGGGAAAGAAGGTGGTACGATG
TGGGGTATCGGTTAAGTGGTGGGATGACGAGCTGAAAGAAGAAATAGGGG
AACGTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAGTAGTGCAGAAGGCCAGCGGAGGCCTGGAGGG
GAACGTCAAGCAGATGTGGGAAGGGATCATTGGTGTTGTAAAAAAGACCG
CTCAAGGGGGGGTACAGGGGTAGCAACTTTGCGAGGAGTGAACGGCGGAT
TAGTCAGCAGTGGGAAGGGAAAAAGGGAAGTTCTATCAGGACACTGCAAG
AGACTTGGAGTGCCCTCGGAGAATGAAGCTTTTGACCAAGCGTTTAAGAA
GGAGGTGGACGCATGGGCCCAAAAAGAAGAAGAGACATCGAAGGCAGACG
TTGGGAACGTAGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCG
TGTGTGAACAAGCTGAAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGT
CAACGAGTTCATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTAC
TGCTATACAATTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGG
GAAGGAGTAGTTGTGAACTTGTTCAAGAAAGGAGACAAGACTGACCCAGG
AAACTAAGGGGGGATCACAATGT
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protein sequence of EsuBft1028_8a-0001

>EsuBft1028_8 ID=EsuBft1028_8|Name=EsuBft1028_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=303bp
MFLGNVYVPPSSKKVASKAQENFGQIGEDVQRFSRKGEVVMVGDFNSRVG
KASSRGQAIGQHGEDKVNDNEVRMLVFSESNELMVLNGRRECDKPEFTRQ
RTVCSEYSMLDYILVDRESTQIPELHVSAIEIGSTDHFLIWANINRSRKV
ESKKQRKVFRWKKERLGDEGTRDEFQKGLAGSVEPFKKLLTGVEDGQVGV
QAAGDSVIEGWESIANATAERVVGKKVVRCGVSVKWWDDELKEEIGERRX
XXXXXXXXXXXXXXXXXXXVVQKASGGLEGNVKQMWEGIIGVVKKTAQGG
VQG
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mRNA from alignment at Scaffold_481:354318..355997+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1028_8a-0001 ID=EsuBft1028_8a-0001|Name=EsuBft1028_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1680bp|location=Sequence derived from alignment at Scaffold_481:354318..355997+ (Ectocarpus subulatus male Bft15b)
GTCGGATTCCTGGTCAAGGAACACTTGTTTGACGTGGTGGAAGTAGTGGT
GAAAACGTATTTCGAGGAAGGCCTATGGCTTCAGATACCTGGGGAGCGGG
GTGAGTAATATATGTTTCTAGGGAACGTATACGTCCCACCGTCGTCGAAG
AAAGTCGCAAGCAAGGCGCAGGAGAACTTTGGACAAATTGGGGAAGATGT
CCAGAGGTTCAGTAGGAAGGGAGAAGTTGTCATGGTGGGCGATTTCAACT
CCAGAGTAGGGAAAGCTTCCAGTAGAGGACAGGCGATCGGGCAGCACGGA
GAAGACAAAGTGAATGACAACGAAGTGAGGATGCTTGTATTCTCGGAAAG
CAACGAACTGATGGTGTTGAACGGTAGGAGAGAATGCGATAAGCCGGAGT
TCACCAGGCAACGGACAGTTTGCAGTGAATACTCGATGCTCGACTACATC
CTGGTAGATAGGGAGAGCACACAGATCCCAGAGCTGCACGTAAGTGCGAT
AGAAATAGGTTCGACCGACCACTTCCTCATATGGGCAAACATCAACCGAT
CTAGAAAAGTGGAGAGTAAAAAACAGAGGAAAGTGTTCCGGTGGAAAAAA
GAGCGTTTGGGAGACGAGGGGACACGGGATGAATTCCAGAAGGGACTGGC
TGGTAGTGTAGAACCCTTCAAGAAACTGCTGACAGGCGTCGAAGACGGAC
AGGTAGGCGTACAAGCAGCAGGGGACAGCGTGATTGAAGGGTGGGAGTCC
ATAGCGAACGCAACGGCAGAGAGAGTAGTGGGAAAGAAGGTGGTACGATG
TGGGGTATCGGTTAAGTGGTGGGATGACGAGCTGAAAGAAGAAATAGGGG
AACGTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAGTAGTGCAGAAGGCCAGCGGAGGCCTGGAGGG
GAACGTCAAGCAGATGTGGGAAGGGATCATTGGTGTTGTAAAAAAGACCG
CTCAAGGGGGGGTACAGGGGTAGCAACTTTGCGAGGAGTGAACGGCGGAT
TAGTCAGCAGTGGGAAGGGAAAAAGGGAAGTTCTATCAGGACACTGCAAG
AGACTTGGAGTGCCCTCGGAGAATGAAGCTTTTGACCAAGCGTTTAAGAA
GGAGGTGGACGCATGGGCCCAAAAAGAAGAAGAGACATCGAAGGCAGACG
TTGGGAACGTAGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCG
TGTGTGAACAAGCTGAAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGT
CAACGAGTTCATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTAC
TGCTGTACAATTGGCTGTGGAAAAGNCAAAAAGAAGAAGAGACATCGAAG
GCAGACGTTGGGAACGTAGAACTAGAAAAGGAGTTCACTGAGGACGAGGT
TGAGGCGTGTGTGAACAAGCTGAAGTGCCACAAAGCAGCAGGAGCGGATG
GGATAGTCAACGAGTTCATGAAGTTTGGGGGGAAGGGGATGATCCAGCTG
ATGGTACTGCTATACAATTGGGTGTGGAAAAACGAGTATACGCCAAGTAG
ATGGAGGGAAGGAGTAGTTGTGAACTTGTTCAAGAAAGGAGACAAGACTG
ACCCAGGAAACTAAGGGGGGATCACAATGT
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Coding sequence (CDS) from alignment at Scaffold_481:354318..355997+

>EsuBft1028_8a-0001 ID=EsuBft1028_8a-0001|Name=EsuBft1028_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=912bp|location=Sequence derived from alignment at Scaffold_481:354318..355997+ (Ectocarpus subulatus male Bft15b)
ATGTTTCTAGGGAACGTATACGTCCCACCGTCGTCGAAGAAAGTCGCAAG
CAAGGCGCAGGAGAACTTTGGACAAATTGGGGAAGATGTCCAGAGGTTCA
GTAGGAAGGGAGAAGTTGTCATGGTGGGCGATTTCAACTCCAGAGTAGGG
AAAGCTTCCAGTAGAGGACAGGCGATCGGGCAGCACGGAGAAGACAAAGT
GAATGACAACGAAGTGAGGATGCTTGTATTCTCGGAAAGCAACGAACTGA
TGGTGTTGAACGGTAGGAGAGAATGCGATAAGCCGGAGTTCACCAGGCAA
CGGACAGTTTGCAGTGAATACTCGATGCTCGACTACATCCTGGTAGATAG
GGAGAGCACACAGATCCCAGAGCTGCACGTAAGTGCGATAGAAATAGGTT
CGACCGACCACTTCCTCATATGGGCAAACATCAACCGATCTAGAAAAGTG
GAGAGTAAAAAACAGAGGAAAGTGTTCCGGTGGAAAAAAGAGCGTTTGGG
AGACGAGGGGACACGGGATGAATTCCAGAAGGGACTGGCTGGTAGTGTAG
AACCCTTCAAGAAACTGCTGACAGGCGTCGAAGACGGACAGGTAGGCGTA
CAAGCAGCAGGGGACAGCGTGATTGAAGGGTGGGAGTCCATAGCGAACGC
AACGGCAGAGAGAGTAGTGGGAAAGAAGGTGGTACGATGTGGGGTATCGG
TTAAGTGGTGGGATGACGAGCTGAAAGAAGAAATAGGGGAACGTAGANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAGTAGTGCAGAAGGCCAGCGGAGGCCTGGAGGGGAACGTCAAGC
AGATGTGGGAAGGGATCATTGGTGTTGTAAAAAAGACCGCTCAAGGGGGG
GTACAGGGGTAG
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