EsuBft1028_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1028_7a-0001
Unique NameEsuBft1028_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_481contigScaffold_481:355999..357842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1028_7
Protein domainsSSF56672
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length1844
Hectar predicted targeting categoryother localisation
Evalue9.23e-187
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0016779
GO0006278
GO0004519
GO0032197
GO0090305
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_7aEsuBft1028_7aEctocarpus subulatus male Bft15bgeneScaffold_481 355999..357842 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_7a-0001-exonEsuBft1028_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_481 355999..357842 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_7a-0001-exonagat-five_prime_utr-159Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_481 355999..356023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_7a-0001-cdsEsuBft1028_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_481 356024..357571 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_7a-0001-exonagat-three_prime_utr-267Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_481 357572..357842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_7a-0001EsuBft1028_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_481 356024..357571 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1028_7a-0001 ID=EsuBft1028_7a-0001|Name=EsuBft1028_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1844bp|location=Sequence derived from alignment at Scaffold_481:355999..357842+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAACACAGTAGGAAAATTGTTGTGTATGCTGCTGAACGACAGGATACTGG
GAGTATTGGAGAAGGAATATAGCATCAGTGAGGGCCAGGCAGGTTTCCGA
AAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCA
AGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGA
AAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGGAAACAACTGTCC
AAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGA
GTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCTAAATTCTTCG
ACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTC
CAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGG
AGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGG
ATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATT
GACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTACCAACGTTAA
GAAGAGTGCCGTCATGGTATTCAACGAGAACAAGGAAAAACCAGCTGAAC
ATAGATGGAAGTGGAGGATCGAGGAGATTGCATTAGTGGACCAGTACACA
AACCTCGGAGTAGAAATCGCAAAAGATTGCTCGTGGAATACACCCATGTC
CAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCTAATAC
TCGCAAACCGGCACCTTGATACACGCATCAAATTGACGGGTTTGAAGAGC
GAAATCGTACCGCCGCTAGAGTACGCCGGCGAAGTATGGGAAGGAAATAA
GAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCA
TCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTG
GGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCA
GTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGG
AGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTC
AAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAAC
GCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTT
GTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAG
GGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAGTAGGGTTCAAGCACTA
CCTACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGA
CCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGAC
GACGAGGACGATGAGTTCAAATGTGATTGCGGCTTCGAATGCAAAGGCCG
TGTTCATGTAGTAGCGGAATGTCCGTTGTACAAGAAGGAGAGGGGAGTGT
ACGTGACTGAGCTGGGAAAATAGATGGGACGTAACAGGGAGATGTTTGAG
GCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTG
GGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGA
CATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGT
GATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAA
TGGTCTAACCGCTAAGGCATGCAAAACATGAGCGTACGCCCCCC
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protein sequence of EsuBft1028_7a-0001

>EsuBft1028_7 ID=EsuBft1028_7|Name=EsuBft1028_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=515bp
MLLNDRILGVLEKEYSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAGKP
TYCFFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVML
DGELSKFFDIEQGVPQGCTLSPTLFQVFINDLLEVVEAVRKGVKVGDTET
SVSGMLFADDFVGMSDTPEGLQLQIDAAKKFTDKWRLSTNVKKSAVMVFN
ENKEKPAEHRWKWRIEEIALVDQYTNLGVEIAKDCSWNTPMSKVAEKGKA
RAGKLHLILANRHLDTRIKLTGLKSEIVPPLEYAGEVWEGNKKVVKELEA
AQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGE
ERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQG
FKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGVGFKHYLHGPMDAG
TKLKVKFRTGDIGLRERRRRHRTVDDEDDEFKCDCGFECKGRVHVVAECP
LYKKERGVYVTELGK
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mRNA from alignment at Scaffold_481:355999..357842+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1028_7a-0001 ID=EsuBft1028_7a-0001|Name=EsuBft1028_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1844bp|location=Sequence derived from alignment at Scaffold_481:355999..357842+ (Ectocarpus subulatus male Bft15b)
AAACACAGTAGGAAAATTGTTGTGTATGCTGCTGAACGACAGGATACTGG
GAGTATTGGAGAAGGAATATAGCATCAGTGAGGGCCAGGCAGGTTTCCGA
AAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCA
AGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGA
AAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGGAAACAACTGTCC
AAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGA
GTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCTAAATTCTTCG
ACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTC
CAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGG
AGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGG
ATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATT
GACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTACCAACGTTAA
GAAGAGTGCCGTCATGGTATTCAACGAGAACAAGGAAAAACCAGCTGAAC
ATAGATGGAAGTGGAGGATCGAGGAGATTGCATTAGTGGACCAGTACACA
AACCTCGGAGTAGAAATCGCAAAAGATTGCTCGTGGAATACACCCATGTC
CAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCTAATAC
TCGCAAACCGGCACCTTGATACACGCATCAAATTGACGGGTTTGAAGAGC
GAAATCGTACCGCCGCTAGAGTACGCCGGCGAAGTATGGGAAGGAAATAA
GAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCA
TCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTG
GGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCA
GTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGG
AGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTC
AAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAAC
GCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTT
GTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAG
GGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAGTAGGGTTCAAGCACTA
CCTACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGA
CCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGAC
GACGAGGACGATGAGTTCAAATGTGATTGCGGCTTCGAATGCAAAGGCCG
TGTTCATGTAGTAGCGGAATGTCCGTTGTACAAGAAGGAGAGGGGAGTGT
ACGTGACTGAGCTGGGAAAATAGATGGGACGTAACAGGGAGATGTTTGAG
GCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTG
GGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGA
CATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGT
GATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAA
TGGTCTAACCGCTAAGGCATGCAAAACATGAGCGTACGCCCCCC
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Coding sequence (CDS) from alignment at Scaffold_481:355999..357842+

>EsuBft1028_7a-0001 ID=EsuBft1028_7a-0001|Name=EsuBft1028_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1548bp|location=Sequence derived from alignment at Scaffold_481:355999..357842+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGAACGACAGGATACTGGGAGTATTGGAGAAGGAATATAGCAT
CAGTGAGGGCCAGGCAGGTTTCCGAAAGAAGAGGGGGTGCGTAGACCACG
TGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCG
ACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTGTGGAG
AAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAATGT
GGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTA
GACGGAGAACTGTCTAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGG
TTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGG
AAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACG
TCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACAC
CCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATA
AGTGGAGATTGTCTACCAACGTTAAGAAGAGTGCCGTCATGGTATTCAAC
GAGAACAAGGAAAAACCAGCTGAACATAGATGGAAGTGGAGGATCGAGGA
GATTGCATTAGTGGACCAGTACACAAACCTCGGAGTAGAAATCGCAAAAG
ATTGCTCGTGGAATACACCCATGTCCAAGGTAGCGGAAAAGGGCAAAGCA
CGAGCAGGGAAGCTGCACCTAATACTCGCAAACCGGCACCTTGATACACG
CATCAAATTGACGGGTTTGAAGAGCGAAATCGTACCGCCGCTAGAGTACG
CCGGCGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCG
GCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAGGCGCACAAG
TAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAA
GAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGAG
GAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAG
GGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGG
GGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGG
TTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCT
GAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGA
AGGAAGGAGTAGGGTTCAAGCACTACCTACATGGACCAATGGATGCAGGA
ACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACG
TCGACGAAGACATAGGACGGTAGACGACGAGGACGATGAGTTCAAATGTG
ATTGCGGCTTCGAATGCAAAGGCCGTGTTCATGTAGTAGCGGAATGTCCG
TTGTACAAGAAGGAGAGGGGAGTGTACGTGACTGAGCTGGGAAAATAG
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