EsuBft1028_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1028_5a-0001
Unique NameEsuBft1028_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_481contigScaffold_481:371993..375262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1028_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length59
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003620.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_5aEsuBft1028_5aEctocarpus subulatus male Bft15bgeneScaffold_481 371993..375262 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_5a-0001-exonEsuBft1028_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_481 371993..372145 +
EsuBft1028_5a-0001-exonagat-exon-7181Ectocarpus subulatus male Bft15bexonScaffold_481 373467..373695 +
EsuBft1028_5a-0001-exonagat-exon-7180Ectocarpus subulatus male Bft15bexonScaffold_481 375054..375262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_5a-0001-cdsEsuBft1028_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_481 371993..372145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1028_5a-0001EsuBft1028_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_481 371993..375262 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1028_5a-0001 ID=EsuBft1028_5a-0001|Name=EsuBft1028_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=591bp|location=Sequence derived from alignment at Scaffold_481:371993..375262+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCTGCGGCGATGCAGCAGCAGCAGCAGCAGCAGCAGCATCCTCC
AGGAGGAAGCATCTTAGGTGTTGCTCGCGAGAAGGACGACGGTGCCTTGC
GGGCGTTGTGCCAGGTGTGCTCGACTTCCGGCGAAGTAGGGGAAGCCAGG
AAGGCGTGCGTCCTGGTGACGATCTACCGCAGGGAGAGCGACCTGTTCGC
GCTCTTGCTCCGAGAGCGGCGCGACCCCCCCTCTTCCTCGTCCACGGCCG
ACGTCGCCGCAGGTCGGGGCGGTGGCAAGGCGGCGAGTGCCGGGCTGACT
GTGCTGTGCGACATGTCGCTAGATGACGGGGTTCACTTGGAGATGCAGAG
CGCCCCCCTCGTCGTCAAGGTCGTCAACACCTGCGGCCAGAGGATAGCTT
ACCTGCTGGAGTTCGGCCGAGCGATGGACCTGGTGACCTTCCAGCGAGCG
TTCACCTCGGCGAGGGGCTACTTCCGACAGATGCTAACCCTGCGGACTCT
TGTGGCCGACTCTTTCTGGCAGGGCTTTGCTTCTGGAGCAGGTGGGCCCG
CGGGTGTTTTTATTCTTATGTGTACATGTTGGATAGTCTAA
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protein sequence of EsuBft1028_5a-0001

>EsuBft1028_5 ID=EsuBft1028_5|Name=EsuBft1028_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=196bp
MMAAAMQQQQQQQQHPPGGSILGVAREKDDGALRALCQVCSTSGEVGEAR
KACVLVTIYRRESDLFALLLRERRDPPSSSSTADVAAGRGGGKAASAGLT
VLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLVTFQRA
FTSARGYFRQMLTLRTLVADSFWQGFASGAGGPAGVFILMCTCWIV
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mRNA from alignment at Scaffold_481:371993..375262+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1028_5a-0001 ID=EsuBft1028_5a-0001|Name=EsuBft1028_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3270bp|location=Sequence derived from alignment at Scaffold_481:371993..375262+ (Ectocarpus subulatus male Bft15b)
ATGATGGCTGCGGCGATGCAGCAGCAGCAGCAGCAGCAGCAGCATCCTCC
AGGAGGAAGCATCTTAGGTGTTGCTCGCGAGAAGGACGACGGTGCCTTGC
GGGCGTTGTGCCAGGTGTGCTCGACTTCCGGCGAAGTAGGGGAAGCCAGG
AAGGTGAGAGACGTTGCCGGGGCCCGGTTCTGATATTTTTCCCGGTGTCG
GAGGTGCTGGGAGAGAGAGCGGGGGGTGCGAGTGTGATGAACCCATTCAA
CGATTGCTGGCGACTCTCTTGCTCAGCGTGCACATCCGCAGCTTGTCGCT
CGTGAAGCAAATACGCTGTTGCGTGAGAGACGAAACCTAAGATGTCATAT
TCAACGGGAGTCATTCGCACTAGAGCCATGACAATATCTACAATTCACGC
ACAGGTGGCTATTAATAGCTGTATATTCCTGCACTCGTCTTCAAGTAATC
GCCCCGCAAATTTAAATTTCACCCCACACCCCACGATCCTCCAATCTCAC
AATCTCACACCCCAAATCTCAACTCCATCATCATCTTTCACACCCTGGAT
CCATATGCATACCTCCACACAAGAGAACACGCCACACACAGCAGTCACGT
CGACTTTGGTGTTGATGTAATTGCTACGAACTTGACCTTGCCCACCACAA
AAATAACGCAGCGGTGTGAGAGCTCAACCCAACACAGCTGTTTTTTGCCG
TTGTTGTTGAACGGAAATTGTGTTGTGCAGACGCGATGATGATGATCGCA
CAAATTTTAGGTACAGCACTACTAGCTTTTACGAGCCTCGTCGGCACTCC
TGACACACAATGTTTGCCGTTTGTGCTGGTTATGGCATTTTGGGCGACAA
TGCCTCCGGCCGTTGGTACAGCCTATGGCACATGACACATACATGTAGAA
ATTCACCGCTCAGCCCAAGAGCGGGGTCGTGGGACGCCTAGTTGTCTTCA
TATGAAAAAAAACGGTCCGTCTCCGCGAGGAAGCTTCTGACACGTACTGG
TCCAACTGATGCGGACGCCATCCGTGGTCACAAGCCAACTACCCCAAAAC
ACCTACAAAACACCTAGAACTACGGAATGTTCCTTTGGGACGTGCACTTC
GCAGAGGACACAGATTCGCGAATGACCGAGAGGGGGACGACAACAGAAGA
CACAGTACCCGACGCATGGAATATCTTGCTGGTTTTCTTGCGCCCTAAAG
GTTCGTCTATCGAAAGTACGAGAGTACCGACTATTTGGTNCTTCCCCCCC
TCGCTTTCATTTTCTCTTAAGGTTTCCTACAAGGCCTTGTGCCGCCCCGA
TTCAATCGACTGCCCGAATGGAGTGTTGGATCAACGAACGGGTGGGCGAT
ACACCCCCACCTACCCAACGACGATGCCAACTTCCGTTCGACGGGCTTTA
AGTCTGTCCTTCCTGAATGCTAACGCCTCCACGTGCTTTTAACCAAACCA
CCGCAATAATGGCGAACGAACCAGGCGTGCGTCCTGGTGACGATCTACCG
CAGGGAGAGCGACCTGTTCGCGCTCTTGCTCCGAGAGCGGCGCGACCCCC
CCTCTTCCTCGTCCACGGCCGACGTCGCCGCAGGTCGGGGCGGTGGCAAG
GCGGCGAGTGCCGGGCTGACTGTGCTGTGCGACATGTCGCTAGATGACGG
GGTTCACTTGGAGATGCAGAGCGCCCCCCTCGTCGTCAAGGTCGTCAACA
CCTGTGAGTGTTTCTCTTTAATTCCTTTTTTTTATAGAGATTGTACGTAG
AATCACAGAAAGACTGCTCGTTGAAGATGTAACCACGGTTGAGTTCTCTG
CAGTGAGTGGGAGGAAAACCGGCTGGATACTGAGCAATTTGAGTGTTTCT
ATGCCTTTTCATTCACCCAGTTTGTTTCATTTTTCTTCTTGTTGCGGAGA
TGTTTTGGGTGCACGAGTGGGCACCCTATCGCACTAGAAGATTTTGAGCT
TCGAAGCGGGGGGGGGGGGGTACTCATAGTCGTGCATGCCGTAGTCGTTA
GACCATTGACCTCGCGTCCCTACAAAGCCGGGACGGAGCACGCCGGGTTC
TCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCTGTGAGGTATT
CGGCGAGTCGCATGAAGGGTGCGCTGCATCCTGCTAAGGGTTTTCGGCAT
CTTGTGCCTACTTCCTTGCGTACGGATGACAGCTGCGTATGACTTAATGT
ATTTTCTGGTGCTTTCACTTCCAGACAGTTGTAAGCACTGTGTAACTGTC
TCGAGGGTGCTTGACCATTTTAACACAACGTGGTGCGATCATCCCCCTTG
CGCGGAGTGAGGGTTCTCCACCCCGCACAACATGATCTACTCGACCACCA
TTATTGTTTACCGCCAAAAATAAAACCGGAGGTAAAAAAAAAAAAAAAAA
ACGGTAACCTGGTTGCCGAGTTCACGAAGTGAATTNGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCTTAG
TGTTAGCAAGTGCACTAAGATTTGGGTGCGTAGGTGGTTCTAGCCGTGCG
TCGTTTGTGGTCTTCCACACTCGCCATCGCCTCAGGGTAGACCGCGCGTG
TGTGCCCGTAGGAGTTGTCGGGATGTGCGAGCACCCCTGGAGTCGAATGA
CACCGTCGTGTGTGAGGCGGTGGAGCGCTGAAGTTTTACATTTCCAAACA
ACATTTCGGTGCCGAATATCGACGGTGTACAGGATATGGCACATTTGTCA
TTACTCTCGCGTCCTCTCGTTATTCTGCTGCGTTAGTTCTGCGGTAGGTG
CATGTCCCTATGCCAACAGGTGGCAGGGTGGTTGTCCCGCCAGCAGAATC
ACCATTGCTCAAATAGGTTGTCGGAGCGTTCCGAGGATCGTTCTCGTGGC
GACACTGCTGCTGTTGCGTGTGTCACCACCGCCACACCTCTCTCGAAAAT
CATCTCACGTGTACTGATCATTAGTATCACTCAGCTGCCCGTGAGGCGTA
TATATACATTGCGCAGGCAGAATCACTCCCACATTACGTTTGCTTGGCTC
GGTTTCGTCAGGCGGCCAGAGGATAGCTTACCTGCTGGAGTTCGGCCGAG
CGATGGACCTGGTGACCTTCCAGCGAGCGTTCACCTCGGCGAGGGGCTAC
TTCCGACAGATGCTAACCCTGCGGACTCTTGTGGCCGACTCTTTCTGGCA
GGGCTTTGCTTCTGGAGCAGGTGGGCCCGCGGGTGTTTTTATTCTTATGT
GTACATGTTGGATAGTCTAA
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Coding sequence (CDS) from alignment at Scaffold_481:371993..375262+

>EsuBft1028_5a-0001 ID=EsuBft1028_5a-0001|Name=EsuBft1028_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=591bp|location=Sequence derived from alignment at Scaffold_481:371993..375262+ (Ectocarpus subulatus male Bft15b)
ATGATGGCTGCGGCGATGCAGCAGCAGCAGCAGCAGCAGCAGCATCCTCC
AGGAGGAAGCATCTTAGGTGTTGCTCGCGAGAAGGACGACGGTGCCTTGC
GGGCGTTGTGCCAGGTGTGCTCGACTTCCGGCGAAGTAGGGGAAGCCAGG
AAGGCGTGCGTCCTGGTGACGATCTACCGCAGGGAGAGCGACCTGTTCGC
GCTCTTGCTCCGAGAGCGGCGCGACCCCCCCTCTTCCTCGTCCACGGCCG
ACGTCGCCGCAGGTCGGGGCGGTGGCAAGGCGGCGAGTGCCGGGCTGACT
GTGCTGTGCGACATGTCGCTAGATGACGGGGTTCACTTGGAGATGCAGAG
CGCCCCCCTCGTCGTCAAGGTCGTCAACACCTGCGGCCAGAGGATAGCTT
ACCTGCTGGAGTTCGGCCGAGCGATGGACCTGGTGACCTTCCAGCGAGCG
TTCACCTCGGCGAGGGGCTACTTCCGACAGATGCTAACCCTGCGGACTCT
TGTGGCCGACTCTTTCTGGCAGGGCTTTGCTTCTGGAGCAGGTGGGCCCG
CGGGTGTTTTTATTCTTATGTGTACATGTTGGATAGTCTAA
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